Wall clock time and date at job start Fri Apr 10 2020 22:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 C 1.52989 * 109.47096 * 239.99576 * 2 1 3 5 5 C 1.53000 * 109.46884 * 119.99526 * 2 1 3 6 6 C 1.52993 * 109.47128 * 60.00140 * 5 2 1 7 7 C 1.53006 * 109.47388 * 179.97438 * 6 5 2 8 8 C 1.52995 * 109.47053 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46780 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99995 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99703 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99726 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47007 * 34.99037 * 12 11 9 14 14 C 1.52996 * 109.47012 * 154.99585 * 12 11 9 15 15 N 1.46498 * 109.47059 * 304.99483 * 14 12 11 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.53003 * 109.46609 * 274.99704 * 12 11 9 25 25 C 1.52996 * 117.49852 * 128.74926 * 24 12 11 26 26 C 1.52995 * 117.50233 * 60.08634 * 24 12 11 27 27 H 1.09000 * 109.47216 * 300.00805 * 1 2 3 28 28 H 1.09000 * 109.46720 * 59.99833 * 1 2 3 29 29 H 1.08993 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46913 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46631 * 299.99720 * 3 2 1 32 32 H 1.08996 * 109.47398 * 59.99825 * 3 2 1 33 33 H 1.09001 * 109.47530 * 299.99776 * 4 2 1 34 34 H 1.09002 * 109.47509 * 60.00311 * 4 2 1 35 35 H 1.09006 * 109.47060 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47629 * 299.99960 * 5 2 1 37 37 H 1.08996 * 109.47034 * 180.02562 * 5 2 1 38 38 H 1.09000 * 109.47457 * 60.00034 * 6 5 2 39 39 H 1.09004 * 109.47647 * 299.99680 * 6 5 2 40 40 H 1.09000 * 109.46678 * 59.99699 * 7 6 5 41 41 H 1.08996 * 109.47019 * 300.00021 * 7 6 5 42 42 H 1.09000 * 109.47753 * 60.00200 * 8 7 6 43 43 H 1.09006 * 109.47172 * 299.99712 * 8 7 6 44 44 H 0.97000 * 119.99883 * 359.97438 * 11 9 8 45 45 H 1.09004 * 109.47066 * 184.99751 * 14 12 11 46 46 H 1.08994 * 109.46974 * 64.99899 * 14 12 11 47 47 H 0.97001 * 120.00384 * 0.02562 * 15 14 12 48 48 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 49 49 H 1.09006 * 115.54473 * 274.41180 * 24 12 11 50 50 H 1.08997 * 117.49676 * 359.97438 * 25 24 12 51 51 H 1.08999 * 117.49788 * 145.01561 * 25 24 12 52 52 H 1.09001 * 117.49820 * 214.97543 * 26 24 12 53 53 H 1.09004 * 117.49643 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1636 1.2494 7 6 2.0405 -2.8850 2.4984 8 6 1.5310 -4.3276 2.4981 9 6 2.0333 -5.0380 3.7287 10 8 2.7305 -4.4485 4.5270 11 7 1.7085 -6.3287 3.9415 12 6 2.1972 -7.0194 5.1375 13 1 2.2335 -6.3192 5.9721 14 6 1.2539 -8.1739 5.4809 15 7 -0.1125 -7.6636 5.6185 16 6 -1.1365 -8.5214 5.9202 17 1 -0.9360 -9.5732 6.0611 18 6 -2.4321 -8.0389 6.0449 19 7 -2.6763 -6.7570 5.8727 20 14 -3.8288 -9.2087 6.4572 21 1 -3.5605 -9.8584 7.7653 22 1 -5.1035 -8.4506 6.5327 23 1 -3.9328 -10.2471 5.4008 24 6 3.6002 -7.5689 4.8714 25 6 4.6943 -7.2341 5.8870 26 6 4.6959 -6.5638 4.5108 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 1.6767 -0.2073 2.1393 37 1 3.1300 -0.7208 1.2496 38 1 1.8934 -2.6775 0.3595 39 1 0.4400 -2.1637 1.2494 40 1 1.6775 -2.3712 3.3885 41 1 3.1304 -2.8850 2.4980 42 1 1.8943 -4.8412 1.6080 43 1 0.4409 -4.3280 2.4983 44 1 1.1511 -6.8002 3.3028 45 1 1.5668 -8.6320 6.4192 46 1 1.2855 -8.9179 4.6850 47 1 -0.2926 -6.7190 5.4916 48 1 -3.5816 -6.4198 5.9602 49 1 3.6387 -8.5483 4.3945 50 1 4.4148 -6.6220 6.7445 51 1 5.4530 -7.9930 6.0780 52 1 5.4557 -6.8822 3.7970 53 1 4.4172 -5.5111 4.4627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699580324.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:40 Heat of formation + Delta-G solvation = -42.717261 kcal Electronic energy + Delta-G solvation = -26152.873721 eV Core-core repulsion = 22638.112008 eV Total energy + Delta-G solvation = -3514.761713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.77066 -38.40148 -37.19057 -34.98166 -34.18160 -33.32114 -31.15244 -29.66281 -27.87345 -27.50068 -27.46867 -24.73237 -23.86578 -22.13151 -21.55052 -21.34190 -20.19257 -19.88622 -18.74362 -17.28335 -16.52827 -16.06119 -15.85802 -15.13575 -15.03138 -14.90243 -14.55057 -14.33894 -14.24006 -13.76314 -13.48949 -13.14893 -12.94729 -12.71848 -12.69005 -12.44086 -12.10965 -12.01571 -11.88159 -11.71459 -11.61512 -11.38708 -11.37205 -11.11879 -11.00185 -10.90212 -10.80351 -10.79107 -10.56243 -10.45354 -10.37811 -10.21589 -10.08044 -9.92377 -9.68505 -9.36012 -8.91591 -8.54057 -6.97093 -5.79139 -3.08890 3.02099 3.41935 3.46431 3.47507 3.49597 4.17800 4.51539 4.55054 4.62371 4.62469 4.91664 4.99617 5.01025 5.04179 5.20374 5.28541 5.32635 5.33133 5.39171 5.45355 5.49096 5.52409 5.55474 5.57779 5.61536 5.70032 5.74648 5.77890 5.78661 5.83192 5.86838 5.88146 5.89566 5.94885 6.03155 6.10872 6.12605 6.15361 6.24125 6.24936 6.36946 6.39163 6.43902 6.53216 6.55611 6.71262 7.01290 7.66535 7.96735 8.38856 8.65266 9.50531 10.06462 10.42166 11.43131 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.002987 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.555660 B = 9372.329415 C =11634.672839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.101 4.101 8 C -0.142 4.142 9 C 0.516 3.484 10 O -0.550 6.550 11 N -0.709 5.709 12 C 0.168 3.832 13 H 0.086 0.914 14 C 0.148 3.852 15 N -0.731 5.731 16 C -0.243 4.243 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.162 4.162 25 C -0.172 4.172 26 C -0.185 4.185 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.403 0.597 45 H 0.034 0.966 46 H 0.024 0.976 47 H 0.386 0.614 48 H 0.256 0.744 49 H 0.102 0.898 50 H 0.094 0.906 51 H 0.089 0.911 52 H 0.081 0.919 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.266 10.131 -13.085 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.146 4.146 6 C -0.161 4.161 7 C -0.139 4.139 8 C -0.182 4.182 9 C 0.303 3.697 10 O -0.429 6.429 11 N -0.359 5.359 12 C 0.063 3.937 13 H 0.104 0.896 14 C 0.020 3.980 15 N -0.376 5.376 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.182 4.182 25 C -0.210 4.210 26 C -0.222 4.222 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.238 0.762 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.220 0.780 48 H 0.066 0.934 49 H 0.120 0.880 50 H 0.112 0.888 51 H 0.107 0.893 52 H 0.100 0.900 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.642 10.401 -12.465 20.576 hybrid contribution -1.194 -0.724 -0.084 1.399 sum 11.448 9.677 -12.550 19.550 Atomic orbital electron populations 1.21942 0.94622 1.02158 1.01471 1.20564 0.95745 0.95235 0.95605 1.21874 1.00830 0.95626 1.01547 1.21930 1.00812 1.00551 0.96757 1.21628 1.00463 0.95439 0.97024 1.21749 1.01153 0.95239 0.97965 1.21311 1.01089 0.93241 0.98248 1.21686 1.03068 0.96969 0.96471 1.20620 0.79781 0.81775 0.87522 1.90586 1.38643 1.66228 1.47431 1.46001 1.52633 1.11814 1.25432 1.20765 0.90547 0.94613 0.87749 0.89584 1.20911 0.85662 0.93104 0.98328 1.42339 1.01190 1.08744 1.85344 1.19173 0.87006 0.90972 1.40235 0.91202 1.24749 0.97438 0.96034 1.02600 1.69659 1.20134 1.11914 1.56244 0.86259 0.81814 0.79786 0.78244 1.21261 1.21696 1.21279 1.22649 0.91000 0.99822 1.04681 1.22889 1.01037 1.03369 0.93674 1.23264 1.00589 1.00510 0.97842 0.92675 0.93067 0.92082 0.92817 0.92913 0.92719 0.92179 0.93065 0.92844 0.91905 0.92075 0.91851 0.91546 0.91266 0.91611 0.89427 0.88702 0.76203 0.94822 0.95830 0.77995 0.93443 0.88028 0.88798 0.89300 0.90031 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.12 37.16 0.30 -0.88 16 2 C -0.07 -0.57 0.80 -154.51 -0.12 -0.70 16 3 C -0.14 -1.05 8.47 37.16 0.31 -0.74 16 4 C -0.14 -1.08 8.12 37.15 0.30 -0.78 16 5 C -0.11 -0.97 4.27 -26.73 -0.11 -1.08 16 6 C -0.12 -1.17 4.51 -26.73 -0.12 -1.29 16 7 C -0.10 -1.18 4.50 -26.73 -0.12 -1.30 16 8 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 9 C 0.52 8.17 7.16 -10.98 -0.08 8.09 16 10 O -0.55 -10.19 13.01 5.56 0.07 -10.12 16 11 N -0.71 -11.31 4.50 -53.80 -0.24 -11.55 16 12 C 0.17 2.88 2.43 -67.93 -0.17 2.71 16 13 H 0.09 1.69 7.34 -51.93 -0.38 1.31 16 14 C 0.15 2.91 5.80 -4.04 -0.02 2.89 16 15 N -0.73 -18.11 5.43 -59.91 -0.33 -18.44 16 16 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 20 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.16 -2.35 5.36 -90.62 -0.49 -2.83 16 25 C -0.17 -2.34 10.18 -26.70 -0.27 -2.61 16 26 C -0.19 -2.60 9.74 -26.70 -0.26 -2.86 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 39 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 40 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.40 6.12 8.60 -40.82 -0.35 5.76 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.39 10.19 7.33 -40.82 -0.30 9.89 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 50 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 51 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 52 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 53 H 0.12 1.91 5.02 -51.93 -0.26 1.65 16 LS Contribution 412.16 15.07 6.21 6.21 Total: -1.00 -30.53 412.16 -10.03 -40.56 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -10.20 Total: 13.81 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -1.25 Total: -10.53 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.16 Total: -57.09 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.53 -10.03 -40.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699580324.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.155 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds