Wall clock time and date at job start Fri Apr 10 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 C 1.52989 * 109.47096 * 239.99576 * 2 1 3 5 5 C 1.53000 * 109.46884 * 119.99526 * 2 1 3 6 6 C 1.52993 * 109.47128 * 60.00140 * 5 2 1 7 7 C 1.53006 * 109.47388 * 179.97438 * 6 5 2 8 8 C 1.52995 * 109.47053 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46780 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99995 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99703 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99726 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47007 * 34.99037 * 12 11 9 14 14 C 1.52996 * 109.47012 * 154.99585 * 12 11 9 15 15 N 1.46498 * 109.47059 * 304.99483 * 14 12 11 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.53003 * 109.46609 * 274.99704 * 12 11 9 25 25 C 1.52996 * 117.49852 * 128.74926 * 24 12 11 26 26 C 1.52995 * 117.50233 * 60.08634 * 24 12 11 27 27 H 1.09000 * 109.47216 * 300.00805 * 1 2 3 28 28 H 1.09000 * 109.46720 * 59.99833 * 1 2 3 29 29 H 1.08993 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46913 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46631 * 299.99720 * 3 2 1 32 32 H 1.08996 * 109.47398 * 59.99825 * 3 2 1 33 33 H 1.09001 * 109.47530 * 299.99776 * 4 2 1 34 34 H 1.09002 * 109.47509 * 60.00311 * 4 2 1 35 35 H 1.09006 * 109.47060 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.47629 * 299.99960 * 5 2 1 37 37 H 1.08996 * 109.47034 * 180.02562 * 5 2 1 38 38 H 1.09000 * 109.47457 * 60.00034 * 6 5 2 39 39 H 1.09004 * 109.47647 * 299.99680 * 6 5 2 40 40 H 1.09000 * 109.46678 * 59.99699 * 7 6 5 41 41 H 1.08996 * 109.47019 * 300.00021 * 7 6 5 42 42 H 1.09000 * 109.47753 * 60.00200 * 8 7 6 43 43 H 1.09006 * 109.47172 * 299.99712 * 8 7 6 44 44 H 0.97000 * 119.99883 * 359.97438 * 11 9 8 45 45 H 1.09004 * 109.47066 * 184.99751 * 14 12 11 46 46 H 1.08994 * 109.46974 * 64.99899 * 14 12 11 47 47 H 0.97001 * 120.00384 * 0.02562 * 15 14 12 48 48 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 49 49 H 1.09006 * 115.54473 * 274.41180 * 24 12 11 50 50 H 1.08997 * 117.49676 * 359.97438 * 25 24 12 51 51 H 1.08999 * 117.49788 * 145.01561 * 25 24 12 52 52 H 1.09001 * 117.49820 * 214.97543 * 26 24 12 53 53 H 1.09004 * 117.49643 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1636 1.2494 7 6 2.0405 -2.8850 2.4984 8 6 1.5310 -4.3276 2.4981 9 6 2.0333 -5.0380 3.7287 10 8 2.7305 -4.4485 4.5270 11 7 1.7085 -6.3287 3.9415 12 6 2.1972 -7.0194 5.1375 13 1 2.2335 -6.3192 5.9721 14 6 1.2539 -8.1739 5.4809 15 7 -0.1125 -7.6636 5.6185 16 6 -1.1365 -8.5214 5.9202 17 1 -0.9360 -9.5732 6.0611 18 6 -2.4321 -8.0389 6.0449 19 7 -2.6763 -6.7570 5.8727 20 14 -3.8288 -9.2087 6.4572 21 1 -3.5605 -9.8584 7.7653 22 1 -5.1035 -8.4506 6.5327 23 1 -3.9328 -10.2471 5.4008 24 6 3.6002 -7.5689 4.8714 25 6 4.6943 -7.2341 5.8870 26 6 4.6959 -6.5638 4.5108 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 1.6767 -0.2073 2.1393 37 1 3.1300 -0.7208 1.2496 38 1 1.8934 -2.6775 0.3595 39 1 0.4400 -2.1637 1.2494 40 1 1.6775 -2.3712 3.3885 41 1 3.1304 -2.8850 2.4980 42 1 1.8943 -4.8412 1.6080 43 1 0.4409 -4.3280 2.4983 44 1 1.1511 -6.8002 3.3028 45 1 1.5668 -8.6320 6.4192 46 1 1.2855 -8.9179 4.6850 47 1 -0.2926 -6.7190 5.4916 48 1 -3.5816 -6.4198 5.9602 49 1 3.6387 -8.5483 4.3945 50 1 4.4148 -6.6220 6.7445 51 1 5.4530 -7.9930 6.0780 52 1 5.4557 -6.8822 3.7970 53 1 4.4172 -5.5111 4.4627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699580324.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:39 Heat of formation + Delta-G solvation = -59.026618 kcal Electronic energy + Delta-G solvation = -26153.580947 eV Core-core repulsion = 22638.112008 eV Total energy + Delta-G solvation = -3515.468939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06010 -39.13879 -38.42313 -36.61334 -35.12054 -34.92358 -32.99462 -30.75314 -29.35873 -28.11145 -28.08647 -26.11304 -25.33492 -23.30983 -23.05975 -22.32648 -21.38922 -21.16815 -19.44627 -19.20680 -17.86206 -17.28998 -16.98453 -16.65212 -16.26304 -15.85922 -15.63956 -15.38923 -15.23899 -15.02722 -14.83385 -14.64110 -14.40621 -13.87780 -13.59740 -13.47756 -13.18295 -13.12476 -12.76092 -12.73741 -12.70057 -12.51613 -12.50525 -12.40287 -12.29547 -12.22901 -12.12241 -12.06628 -11.85000 -11.57007 -11.26063 -11.25041 -11.19933 -11.17246 -11.08532 -10.97323 -10.60003 -9.87456 -9.01929 -7.94359 -5.24228 1.48359 1.51004 1.57077 1.75856 2.25630 2.56079 3.04123 3.39551 3.59161 3.75048 3.87961 3.95454 3.96833 4.01471 4.12879 4.15308 4.16784 4.21949 4.35369 4.47590 4.51505 4.56733 4.64573 4.67454 4.75943 4.81675 4.82721 4.85035 4.89211 4.91413 4.97235 5.00016 5.01720 5.05173 5.11647 5.13194 5.15247 5.21422 5.28704 5.29917 5.36392 5.39681 5.45138 5.49399 5.49860 5.62692 5.63472 5.65922 6.26053 6.69055 7.33435 7.38465 8.06243 8.30884 9.28381 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.002987 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.555660 B = 9372.329415 C =11634.672839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.107 4.107 6 C -0.115 4.115 7 C -0.095 4.095 8 C -0.135 4.135 9 C 0.509 3.491 10 O -0.581 6.581 11 N -0.708 5.708 12 C 0.178 3.822 13 H 0.054 0.946 14 C 0.150 3.850 15 N -0.742 5.742 16 C -0.246 4.246 17 H 0.078 0.922 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.974 3.026 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.275 1.275 24 C -0.163 4.163 25 C -0.167 4.167 26 C -0.180 4.180 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.408 0.592 45 H 0.033 0.967 46 H 0.040 0.960 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.120 0.880 50 H 0.079 0.921 51 H 0.115 0.885 52 H 0.104 0.896 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.037 8.885 -14.607 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.145 4.145 6 C -0.152 4.152 7 C -0.133 4.133 8 C -0.174 4.174 9 C 0.298 3.702 10 O -0.462 6.462 11 N -0.357 5.357 12 C 0.073 3.927 13 H 0.072 0.928 14 C 0.023 3.977 15 N -0.386 5.386 16 C -0.378 4.378 17 H 0.096 0.904 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.803 3.197 21 H -0.207 1.207 22 H -0.224 1.224 23 H -0.201 1.201 24 C -0.183 4.183 25 C -0.205 4.205 26 C -0.217 4.217 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.135 0.865 43 H 0.114 0.886 44 H 0.244 0.756 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.138 0.862 50 H 0.097 0.903 51 H 0.133 0.867 52 H 0.123 0.877 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.443 9.119 -13.999 21.444 hybrid contribution -1.365 -0.331 0.430 1.468 sum 12.079 8.788 -13.569 20.180 Atomic orbital electron populations 1.21948 0.94774 1.01994 1.01532 1.20558 0.95602 0.95564 0.95342 1.21868 1.00998 0.95239 1.01722 1.21919 1.00965 1.00509 0.96534 1.21611 1.00458 0.95150 0.97239 1.21683 1.00999 0.95385 0.97182 1.21244 1.00667 0.92969 0.98395 1.21716 1.02964 0.97015 0.95725 1.21268 0.79181 0.81541 0.88222 1.90577 1.40087 1.66760 1.48743 1.45996 1.52676 1.12064 1.25010 1.20496 0.91771 0.93034 0.87403 0.92827 1.21028 0.83720 0.94228 0.98680 1.42504 1.02777 1.07992 1.85288 1.19591 0.87778 0.91652 1.38747 0.90387 1.25559 0.99965 0.97526 1.03500 1.69824 1.20144 1.13724 1.58086 0.85211 0.78372 0.77873 0.78262 1.20709 1.22393 1.20059 1.22556 0.89347 1.00595 1.05810 1.22973 1.01008 1.03552 0.92953 1.23202 1.00673 0.99098 0.98726 0.93311 0.92332 0.92354 0.92561 0.92199 0.93107 0.92145 0.92455 0.92605 0.92995 0.92028 0.90392 0.91660 0.93726 0.92123 0.86462 0.88609 0.75629 0.94885 0.94168 0.79361 0.94081 0.86162 0.90284 0.86657 0.87750 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.12 71.98 0.58 -1.67 16 2 C -0.07 -1.06 0.80 -52.18 -0.04 -1.10 16 3 C -0.14 -1.96 8.47 71.98 0.61 -1.35 16 4 C -0.14 -1.89 8.12 71.98 0.58 -1.31 16 5 C -0.11 -1.87 4.27 30.59 0.13 -1.74 16 6 C -0.12 -2.08 4.51 30.59 0.14 -1.95 16 7 C -0.09 -2.21 4.50 30.59 0.14 -2.08 16 8 C -0.13 -3.21 5.70 29.85 0.17 -3.04 16 9 C 0.51 16.28 7.16 87.66 0.63 16.90 16 10 O -0.58 -22.21 13.01 -3.02 -0.04 -22.25 16 11 N -0.71 -22.47 4.50 -442.51 -1.99 -24.46 16 12 C 0.18 6.09 2.43 44.99 0.11 6.20 16 13 H 0.05 2.19 7.34 -2.39 -0.02 2.17 16 14 C 0.15 5.82 5.80 86.38 0.50 6.32 16 15 N -0.74 -36.91 5.43 -343.46 -1.87 -38.78 16 16 C -0.25 -13.44 9.99 84.03 0.84 -12.60 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 19 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 20 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 C -0.16 -4.49 5.36 -10.80 -0.06 -4.55 16 25 C -0.17 -4.29 10.18 30.62 0.31 -3.98 16 26 C -0.18 -4.79 9.74 30.62 0.30 -4.49 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.93 6.43 -2.39 -0.02 0.91 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.80 6.43 -2.39 -0.02 0.78 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.21 6.43 -2.39 -0.02 1.19 16 39 H 0.06 1.21 6.43 -2.38 -0.02 1.20 16 40 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 41 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 42 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.10 2.31 8.14 -2.38 -0.02 2.30 16 44 H 0.41 12.12 8.60 -92.71 -0.80 11.32 16 45 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.37 20.18 7.33 -92.71 -0.68 19.50 16 48 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 49 H 0.12 2.90 8.11 -2.38 -0.02 2.88 16 50 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 51 H 0.12 2.35 8.14 -2.39 -0.02 2.34 16 52 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 53 H 0.09 3.04 5.02 -2.38 -0.01 3.03 16 Total: -1.00 -65.74 412.16 3.21 -62.52 By element: Atomic # 1 Polarization: 48.51 SS G_CDS: -0.61 Total: 47.90 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.41 Total: -14.09 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -3.57 Total: -121.61 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.04 Total: -22.25 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.74 3.21 -62.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699580324.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.494 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds