Wall clock time and date at job start Fri Apr 10 2020 22:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47550 * 2 1 4 4 C 1.53000 * 109.47384 * 185.06633 * 3 2 1 5 5 C 1.53002 * 109.47334 * 304.58311 * 4 3 2 6 6 C 1.52996 * 109.46690 * 294.08244 * 5 4 3 7 7 C 1.53002 * 109.47063 * 185.18768 * 6 5 4 8 8 C 1.50702 * 109.47166 * 64.57751 * 4 3 2 9 9 O 1.21277 * 120.00455 * 255.09512 * 8 4 3 10 10 N 1.34779 * 119.99758 * 75.09095 * 8 4 3 11 11 C 1.48317 * 127.76828 * 354.21263 * 10 8 4 12 12 C 1.54392 * 104.53602 * 219.52988 * 11 10 8 13 13 C 1.54283 * 105.05448 * 336.26078 * 12 11 10 14 14 C 1.52994 * 110.34234 * 118.81946 * 13 12 11 15 15 C 1.53001 * 110.34183 * 240.97240 * 13 12 11 16 16 N 1.46499 * 109.47242 * 298.54504 * 15 13 12 17 17 C 1.36934 * 120.00058 * 179.97438 * 16 15 13 18 18 H 1.07993 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99882 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99972 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47010 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47235 * 120.00102 * 21 19 17 24 24 H 1.48504 * 109.46973 * 240.00158 * 21 19 17 25 25 C 1.48148 * 127.84070 * 174.29893 * 10 8 4 26 26 H 1.08994 * 109.47447 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47282 * 300.00389 * 1 2 3 28 28 H 1.09000 * 109.46802 * 59.99770 * 1 2 3 29 29 H 1.09002 * 109.47282 * 239.99611 * 2 1 3 30 30 H 1.09003 * 109.47306 * 120.00180 * 2 1 3 31 31 H 1.09003 * 109.46795 * 65.06852 * 3 2 1 32 32 H 1.09000 * 109.47207 * 305.06541 * 3 2 1 33 33 H 1.08998 * 109.47252 * 184.58004 * 4 3 2 34 34 H 1.08996 * 109.47162 * 54.07897 * 5 4 3 35 35 H 1.08998 * 109.47190 * 174.08268 * 5 4 3 36 36 H 1.08995 * 109.47516 * 305.18944 * 6 5 4 37 37 H 1.08999 * 109.47479 * 65.18933 * 6 5 4 38 38 H 1.08998 * 109.47257 * 180.02562 * 7 6 5 39 39 H 1.08998 * 109.47700 * 300.00002 * 7 6 5 40 40 H 1.08997 * 109.47056 * 60.00268 * 7 6 5 41 41 H 1.08996 * 110.37876 * 100.80673 * 11 10 8 42 42 H 1.08994 * 110.50944 * 338.32100 * 11 10 8 43 43 H 1.09004 * 110.33788 * 217.33648 * 12 11 10 44 44 H 1.08993 * 110.34024 * 95.19057 * 12 11 10 45 45 H 1.09000 * 109.47447 * 61.44862 * 14 13 12 46 46 H 1.08999 * 109.47366 * 181.45309 * 14 13 12 47 47 H 1.09006 * 109.47276 * 301.45291 * 14 13 12 48 48 H 1.08998 * 109.47347 * 58.55134 * 15 13 12 49 49 H 1.09007 * 109.46749 * 178.54661 * 15 13 12 50 50 H 0.97006 * 119.99810 * 0.02562 * 16 15 13 51 51 H 0.97008 * 119.99731 * 180.02562 * 20 19 17 52 52 H 1.09003 * 110.40283 * 21.62098 * 25 10 8 53 53 H 1.08992 * 110.50602 * 259.24202 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5647 1.4443 -0.1274 5 6 4.1709 0.5915 0.9890 6 6 3.8967 1.2523 2.3414 7 6 4.6117 0.4706 3.4453 8 6 3.9577 0.8730 -1.4654 9 8 4.4116 -0.2494 -1.5359 10 7 3.8047 1.6094 -2.5838 11 6 3.1647 2.9411 -2.7140 12 6 2.3785 2.8650 -4.0407 13 6 3.0831 1.7650 -4.8615 14 6 2.1132 0.6199 -5.1591 15 6 3.6353 2.3454 -6.1650 16 7 2.5311 2.8703 -6.9722 17 6 2.7851 3.4431 -8.1898 18 1 3.7993 3.5074 -8.5553 19 6 1.7388 3.9400 -8.9548 20 7 0.5027 3.8611 -8.5096 21 14 2.0852 4.7206 -10.6162 22 1 3.5454 4.6871 -10.8841 23 1 1.3695 3.9664 -11.6764 24 1 1.6160 6.1296 -10.6085 25 6 4.2357 1.2718 -3.9604 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7527 1.9294 0.9319 32 1 1.6046 1.9818 -0.8411 33 1 3.9349 2.4662 -0.0457 34 1 3.7218 -0.4015 0.9722 35 1 5.2469 0.5063 0.8377 36 1 4.2649 2.2781 2.3259 37 1 2.8239 1.2543 2.5341 38 1 4.4161 0.9411 4.4088 39 1 4.2436 -0.5552 3.4610 40 1 5.6846 0.4687 3.2527 41 1 3.9223 3.7229 -2.7655 42 1 2.4865 3.1220 -1.8802 43 1 2.4275 3.8193 -4.5652 44 1 1.3410 2.5905 -3.8510 45 1 1.2782 0.9953 -5.7507 46 1 2.6318 -0.1601 -5.7165 47 1 1.7383 0.2084 -4.2218 48 1 4.3337 3.1506 -5.9372 49 1 4.1518 1.5629 -6.7210 50 1 1.6202 2.8129 -6.6437 51 1 -0.2285 4.2080 -9.0444 52 1 4.3652 0.1945 -4.0645 53 1 5.1612 1.7909 -4.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699848624.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:44 Heat of formation + Delta-G solvation = -73.304537 kcal Electronic energy + Delta-G solvation = -27313.249830 eV Core-core repulsion = 23797.161753 eV Total energy + Delta-G solvation = -3516.088076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51844 -39.64968 -37.48422 -36.44541 -34.65751 -34.26701 -32.20989 -31.46434 -30.61053 -28.04311 -27.35709 -27.06253 -25.14101 -24.08682 -23.88289 -22.94412 -21.17460 -20.22456 -19.53039 -19.14018 -17.81822 -17.15235 -16.81111 -16.64029 -16.36909 -15.87977 -15.48877 -15.24488 -14.98087 -14.91497 -14.62430 -14.57024 -14.20002 -14.05546 -13.97002 -13.69613 -13.51658 -13.14476 -13.00271 -12.89411 -12.82965 -12.81011 -12.66665 -12.47436 -12.35072 -12.08048 -12.05162 -11.82886 -11.78697 -11.71981 -11.60953 -11.56418 -11.48168 -11.34348 -11.17920 -10.92393 -10.63428 -9.70817 -8.95453 -7.92847 -5.20100 1.48627 1.49244 1.58902 1.64105 1.96336 2.57679 3.35569 3.41530 3.66613 3.68392 3.74467 3.80980 3.91719 4.11898 4.18477 4.23878 4.29026 4.29703 4.35841 4.37930 4.39225 4.54817 4.60342 4.62581 4.69581 4.73524 4.76151 4.81406 4.85220 4.86488 4.94263 4.98304 4.98629 5.01391 5.05130 5.10532 5.14418 5.16329 5.23397 5.31866 5.34771 5.37197 5.39473 5.43331 5.45833 5.46565 5.53224 5.57884 6.29829 6.61044 7.16743 7.37287 8.12888 8.37655 9.30738 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.002758 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.321276 B =10148.231465 C =10511.096588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.109 4.109 4 C -0.097 4.097 5 C -0.099 4.099 6 C -0.118 4.118 7 C -0.154 4.154 8 C 0.534 3.466 9 O -0.586 6.586 10 N -0.620 5.620 11 C 0.105 3.895 12 C -0.120 4.120 13 C -0.071 4.071 14 C -0.120 4.120 15 C 0.167 3.833 16 N -0.737 5.737 17 C -0.240 4.240 18 H 0.073 0.927 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.969 3.031 22 H -0.268 1.268 23 H -0.296 1.296 24 H -0.293 1.293 25 C 0.119 3.881 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.028 0.972 49 H 0.015 0.985 50 H 0.377 0.623 51 H 0.250 0.750 52 H 0.067 0.933 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 -2.971 24.506 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.146 4.146 4 C -0.118 4.118 5 C -0.137 4.137 6 C -0.156 4.156 7 C -0.211 4.211 8 C 0.325 3.675 9 O -0.467 6.467 10 N -0.352 5.352 11 C -0.017 4.017 12 C -0.158 4.158 13 C -0.072 4.072 14 C -0.178 4.178 15 C 0.041 3.959 16 N -0.380 5.380 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.799 3.201 22 H -0.193 1.193 23 H -0.224 1.224 24 H -0.220 1.220 25 C -0.004 4.004 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.046 0.954 49 H 0.033 0.967 50 H 0.211 0.789 51 H 0.059 0.941 52 H 0.086 0.914 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.710 -3.572 24.439 25.143 hybrid contribution -0.257 0.094 -1.579 1.603 sum 4.453 -3.479 22.859 23.547 Atomic orbital electron populations 1.21748 0.94975 1.01721 1.02223 1.21574 0.96422 0.97026 1.01298 1.21688 0.91323 0.97352 1.04232 1.21437 0.98587 1.01885 0.89873 1.21452 0.99906 0.98898 0.93420 1.21542 1.01546 0.99678 0.92798 1.21775 1.00307 1.00295 0.98744 1.20982 0.76577 0.84241 0.85661 1.90662 1.48200 1.20552 1.87252 1.49123 1.58440 1.20641 1.07045 1.22675 0.97043 0.83774 0.98239 1.22537 0.99295 0.98898 0.95068 1.21498 0.95531 0.95842 0.94354 1.21660 0.98694 0.97049 1.00382 1.20757 0.90322 0.95073 0.89792 1.42505 1.05449 1.71065 1.18999 1.19633 0.93177 1.29192 0.95174 0.90863 1.25481 0.95258 1.03474 1.02377 1.69809 0.98805 1.53648 1.39573 0.85130 0.77592 0.77417 0.79962 1.19255 1.22377 1.21992 1.22244 0.96612 1.00788 0.80777 0.93071 0.91067 0.93352 0.95017 0.91105 0.87957 0.91159 0.86798 0.92103 0.93202 0.90944 0.90651 0.91649 0.93170 0.93228 0.89418 0.87578 0.90700 0.91183 0.93610 0.93341 0.92786 0.95403 0.96719 0.78940 0.94082 0.91426 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.13 -2.31 5.18 30.59 0.16 -2.15 16 3 C -0.11 -1.61 4.45 30.59 0.14 -1.47 16 4 C -0.10 -1.68 1.80 -11.54 -0.02 -1.70 16 5 C -0.10 -1.72 3.70 30.59 0.11 -1.61 16 6 C -0.12 -1.38 5.58 30.59 0.17 -1.21 16 7 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 8 C 0.53 13.90 6.06 87.66 0.53 14.43 16 9 O -0.59 -20.07 16.17 -3.02 -0.05 -20.12 16 10 N -0.62 -15.45 3.32 -807.51 -2.68 -18.13 16 11 C 0.10 2.14 6.65 86.50 0.58 2.72 16 12 C -0.12 -3.31 5.77 31.50 0.18 -3.13 16 13 C -0.07 -2.22 0.73 -51.28 -0.04 -2.26 16 14 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 15 C 0.17 6.46 4.91 86.38 0.42 6.89 16 16 N -0.74 -36.00 4.92 -343.45 -1.69 -37.69 16 17 C -0.24 -13.11 9.99 84.03 0.84 -12.28 16 18 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 20 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 21 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 C 0.12 3.37 6.17 86.53 0.53 3.90 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.03 0.79 7.07 -2.39 -0.02 0.77 16 30 H 0.07 1.22 6.52 -2.39 -0.02 1.21 16 31 H 0.10 1.02 6.94 -2.39 -0.02 1.00 16 32 H 0.07 1.08 5.96 -2.39 -0.01 1.06 16 33 H 0.11 1.50 8.04 -2.39 -0.02 1.48 16 34 H 0.06 1.25 6.10 -2.39 -0.01 1.23 16 35 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.74 6.96 -2.39 -0.02 0.72 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.11 1.63 5.48 -2.39 -0.01 1.62 16 43 H 0.07 2.38 7.49 -2.39 -0.02 2.36 16 44 H 0.07 1.95 7.71 -2.39 -0.02 1.93 16 45 H 0.04 1.73 7.00 -2.39 -0.02 1.71 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.03 1.05 8.13 -2.39 -0.02 1.03 16 49 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 50 H 0.38 19.49 6.27 -92.70 -0.58 18.91 16 51 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 52 H 0.07 2.10 7.56 -2.39 -0.02 2.08 16 53 H 0.08 2.13 7.85 -2.39 -0.02 2.11 16 Total: -1.00 -67.36 401.64 4.25 -63.11 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.28 Total: 30.66 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 6.08 Total: -7.76 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -4.09 Total: -113.63 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -67.36 4.25 -63.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699848624.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.195 kcal (2) G-P(sol) polarization free energy of solvation -67.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds