Wall clock time and date at job start Fri Apr 10 2020 22:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47158 * 2 1 4 4 C 1.52992 * 109.47330 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47213 * 64.99866 * 4 3 2 6 6 C 1.52998 * 109.47156 * 185.53028 * 5 4 3 7 7 C 1.52998 * 109.47461 * 184.80948 * 6 5 4 8 8 C 1.50700 * 109.47468 * 184.99882 * 4 3 2 9 9 O 1.21285 * 120.00004 * 274.97326 * 8 4 3 10 10 N 1.34778 * 120.00187 * 94.96850 * 8 4 3 11 11 C 1.47484 * 127.03201 * 355.05215 * 10 8 4 12 12 C 1.54000 * 107.08472 * 154.51475 * 11 10 8 13 13 C 1.54616 * 105.04531 * 1.30116 * 12 11 10 14 14 C 1.52997 * 110.74032 * 263.51242 * 13 12 11 15 15 C 1.53009 * 110.73822 * 140.18670 * 13 12 11 16 16 N 1.46500 * 109.47099 * 61.45578 * 15 13 12 17 17 C 1.36932 * 119.99804 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00153 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99489 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00364 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47095 * 90.00170 * 21 19 17 23 23 H 1.48500 * 109.47440 * 210.00154 * 21 19 17 24 24 H 1.48503 * 109.47098 * 330.00282 * 21 19 17 25 25 C 1.48119 * 127.03461 * 174.73039 * 10 8 4 26 26 H 1.08997 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47192 * 300.00492 * 1 2 3 28 28 H 1.09005 * 109.47044 * 59.99815 * 1 2 3 29 29 H 1.08995 * 109.46982 * 119.99614 * 2 1 3 30 30 H 1.08994 * 109.47056 * 240.00215 * 2 1 3 31 31 H 1.09005 * 109.47294 * 300.00032 * 3 2 1 32 32 H 1.09000 * 109.47471 * 59.99679 * 3 2 1 33 33 H 1.09009 * 109.47129 * 304.99802 * 4 3 2 34 34 H 1.08995 * 109.46894 * 305.52236 * 5 4 3 35 35 H 1.08995 * 109.47315 * 65.53123 * 5 4 3 36 36 H 1.09004 * 109.47298 * 304.80831 * 6 5 4 37 37 H 1.09003 * 109.47596 * 64.80456 * 6 5 4 38 38 H 1.09003 * 109.47117 * 59.99215 * 7 6 5 39 39 H 1.08993 * 109.47851 * 179.97438 * 7 6 5 40 40 H 1.09004 * 109.46769 * 300.00207 * 7 6 5 41 41 H 1.09010 * 109.91073 * 273.87081 * 11 10 8 42 42 H 1.08999 * 109.91831 * 35.14709 * 11 10 8 43 43 H 1.09009 * 110.32950 * 120.19509 * 12 11 10 44 44 H 1.09000 * 110.32744 * 242.40947 * 12 11 10 45 45 H 1.08998 * 109.46794 * 58.54788 * 14 13 12 46 46 H 1.09002 * 109.46713 * 178.54591 * 14 13 12 47 47 H 1.08999 * 109.46905 * 298.54534 * 14 13 12 48 48 H 1.08998 * 109.46873 * 181.45465 * 15 13 12 49 49 H 1.09005 * 109.46695 * 301.45419 * 15 13 12 50 50 H 0.96999 * 119.99512 * 359.97438 * 16 15 13 51 51 H 0.97005 * 119.99580 * 179.97438 * 20 19 17 52 52 H 1.08999 * 110.65896 * 337.77127 * 25 10 8 53 53 H 1.09002 * 110.65972 * 100.88900 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0794 0.8331 -1.3083 6 6 5.6031 0.7062 -1.2522 7 6 6.1236 0.2095 -2.6025 8 6 4.0724 2.8579 0.1232 9 8 4.1883 3.5491 -0.8668 10 7 4.3928 3.3558 1.3339 11 6 4.2182 2.6949 2.6407 12 6 5.2582 3.3047 3.5988 13 6 6.0018 4.3690 2.7592 14 6 7.3016 3.7981 2.1887 15 6 6.2787 5.6211 3.5940 16 7 7.1366 5.2716 4.7289 17 6 7.5200 6.2376 5.6204 18 1 7.1904 7.2573 5.4866 19 6 8.3325 5.9064 6.6960 20 7 8.7347 4.6636 6.8587 21 14 8.8561 7.2243 7.9118 22 1 7.8599 7.3089 9.0097 23 1 10.1856 6.8778 8.4754 24 1 8.9392 8.5340 7.2167 25 6 4.9986 4.6761 1.6237 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.9337 0.8530 0.8410 34 1 3.6376 -0.1538 -1.4456 35 1 3.7989 1.4762 -2.1424 36 1 6.0409 1.6794 -1.0298 37 1 5.8803 -0.0034 -0.4726 38 1 5.8465 0.9192 -3.3821 39 1 7.2091 0.1196 -2.5627 40 1 5.6859 -0.7637 -2.8249 41 1 3.2124 2.8793 3.0185 42 1 4.3891 1.6230 2.5405 43 1 4.7616 3.7723 4.4491 44 1 5.9538 2.5381 3.9403 45 1 7.0763 2.9277 1.5724 46 1 7.7952 4.5560 1.5805 47 1 7.9590 3.5038 3.0068 48 1 6.7795 6.3663 2.9760 49 1 5.3368 6.0279 3.9622 50 1 7.4330 4.3558 4.8487 51 1 9.3027 4.4322 7.6102 52 1 5.5180 5.0618 0.7465 53 1 4.2399 5.3810 1.9637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699848625.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:47 Heat of formation + Delta-G solvation = -61.091704 kcal Electronic energy + Delta-G solvation = -27141.900745 eV Core-core repulsion = 23626.342257 eV Total energy + Delta-G solvation = -3515.558488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42964 -38.45740 -36.38727 -34.82039 -34.25760 -32.65649 -31.02334 -30.12581 -29.44963 -26.86267 -26.58944 -25.61400 -23.87231 -22.75483 -22.38748 -21.63200 -20.96952 -19.13021 -18.41232 -17.39182 -17.03581 -15.92482 -15.66234 -15.39749 -14.79225 -14.74002 -14.49739 -13.99580 -13.85987 -13.78715 -13.50654 -13.37236 -13.09274 -12.80842 -12.74073 -12.66245 -12.42615 -12.22479 -12.15782 -11.98776 -11.67686 -11.47636 -11.34231 -11.32111 -11.22163 -11.02635 -10.84711 -10.80399 -10.74200 -10.57664 -10.52499 -10.35099 -10.24367 -9.95568 -9.70050 -9.56920 -8.88200 -8.58275 -6.92199 -5.77681 -3.05599 2.66783 3.00551 3.42982 3.48613 3.49977 4.30714 4.41991 4.57582 4.61979 4.77134 4.79121 4.82930 4.90041 4.97743 5.02722 5.08369 5.15980 5.29876 5.35558 5.36563 5.42275 5.47064 5.52616 5.54454 5.58660 5.61117 5.65373 5.69514 5.77551 5.80624 5.87078 5.90495 5.92749 5.96962 5.99482 6.02303 6.05285 6.14310 6.18249 6.20710 6.26414 6.32425 6.44494 6.56836 6.64916 6.77939 6.85220 7.62938 7.69862 8.22179 8.41619 9.53194 10.10712 10.45984 11.45256 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002824 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.222691 B = 9911.181957 C =10482.812239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.105 4.105 5 C -0.105 4.105 6 C -0.127 4.127 7 C -0.149 4.149 8 C 0.538 3.462 9 O -0.545 6.545 10 N -0.617 5.617 11 C 0.100 3.900 12 C -0.120 4.120 13 C -0.078 4.078 14 C -0.127 4.127 15 C 0.168 3.832 16 N -0.728 5.728 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.115 3.885 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.068 0.932 48 H 0.021 0.979 49 H 0.021 0.979 50 H 0.385 0.615 51 H 0.255 0.745 52 H 0.081 0.919 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.392 -11.910 -15.099 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.126 4.126 5 C -0.142 4.142 6 C -0.165 4.165 7 C -0.206 4.206 8 C 0.327 3.673 9 O -0.423 6.423 10 N -0.350 5.350 11 C -0.023 4.023 12 C -0.158 4.158 13 C -0.080 4.080 14 C -0.184 4.184 15 C 0.040 3.960 16 N -0.373 5.373 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.008 4.008 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.039 0.961 49 H 0.039 0.961 50 H 0.219 0.781 51 H 0.064 0.936 52 H 0.099 0.901 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.335 -11.421 -15.646 23.517 hybrid contribution 0.471 0.431 0.997 1.184 sum -12.864 -10.990 -14.649 22.380 Atomic orbital electron populations 1.21772 0.95734 1.01606 1.01929 1.21579 0.95920 0.96237 1.02367 1.21512 0.92394 0.97668 1.02920 1.21398 0.97096 0.93342 1.00759 1.21580 0.95628 1.00772 0.96250 1.21561 0.95479 1.01643 0.97819 1.21724 1.00768 1.00815 0.97308 1.20220 0.76991 0.88798 0.81318 1.90679 1.54363 1.60979 1.36248 1.48864 1.61882 1.18493 1.05769 1.22214 0.99670 0.97376 0.83008 1.22555 0.97207 0.98557 0.97495 1.21784 0.94843 0.96854 0.94483 1.21683 0.96171 0.99799 1.00788 1.20590 0.94111 0.92345 0.88913 1.42319 1.58516 1.09662 1.26782 1.19225 1.24273 0.90540 1.02837 0.91240 1.24718 1.00753 0.96377 0.99133 1.69658 1.40127 1.16526 1.31966 0.86197 0.77730 0.80908 0.81402 1.21775 1.21820 1.20806 1.22454 0.95361 0.84652 0.98303 0.92715 0.92686 0.92736 0.91793 0.91508 0.91155 0.91591 0.89282 0.91017 0.90660 0.91846 0.92197 0.92684 0.92820 0.92953 0.91630 0.91119 0.89702 0.90309 0.93774 0.92871 0.91299 0.96103 0.96117 0.78095 0.93561 0.90054 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.85 5.70 -26.73 -0.15 -1.00 16 3 C -0.11 -0.93 4.66 -26.73 -0.12 -1.06 16 4 C -0.10 -1.05 1.86 -91.77 -0.17 -1.22 16 5 C -0.10 -1.00 4.32 -26.73 -0.12 -1.12 16 6 C -0.13 -1.30 5.83 -26.73 -0.16 -1.46 16 7 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 8 C 0.54 7.31 5.86 -10.98 -0.06 7.24 16 9 O -0.55 -9.30 16.28 5.55 0.09 -9.21 16 10 N -0.62 -8.14 3.21 -169.97 -0.55 -8.69 16 11 C 0.10 1.15 6.79 -2.98 -0.02 1.13 16 12 C -0.12 -1.70 5.52 -25.36 -0.14 -1.84 16 13 C -0.08 -1.23 0.64 -152.82 -0.10 -1.32 16 14 C -0.13 -2.04 8.29 37.16 0.31 -1.73 16 15 C 0.17 3.27 5.09 -4.04 -0.02 3.25 16 16 N -0.73 -17.68 5.16 -59.90 -0.31 -17.98 16 17 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C 0.11 1.66 5.94 -2.31 -0.01 1.65 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.44 6.45 -51.93 -0.33 0.10 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.80 6.47 -51.92 -0.34 0.47 16 34 H 0.07 0.55 6.32 -51.93 -0.33 0.22 16 35 H 0.07 0.84 7.66 -51.93 -0.40 0.44 16 36 H 0.06 0.80 7.15 -51.93 -0.37 0.43 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 42 H 0.07 0.69 6.66 -51.93 -0.35 0.35 16 43 H 0.08 1.30 7.85 -51.92 -0.41 0.90 16 44 H 0.08 1.15 7.86 -51.93 -0.41 0.75 16 45 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.24 7.13 -51.93 -0.37 0.87 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 50 H 0.38 9.73 6.39 -40.82 -0.26 9.46 16 51 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 52 H 0.08 1.25 7.80 -51.93 -0.41 0.85 16 53 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 LS Contribution 408.36 15.07 6.15 6.15 Total: -1.00 -30.97 408.36 -9.45 -40.42 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -10.27 Total: 5.30 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.28 Total: -6.23 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.13 Total: -53.62 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.97 -9.45 -40.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699848625.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.673 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds