Wall clock time and date at job start Fri Apr 10 2020 22:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47143 * 2 1 4 4 C 1.53001 * 109.46963 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46963 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47454 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46891 * 300.00332 * 6 5 4 8 8 C 1.52997 * 109.46978 * 59.99922 * 6 5 4 9 9 C 1.53006 * 109.47164 * 60.00126 * 8 6 5 10 10 C 1.50699 * 109.47389 * 180.02562 * 6 5 4 11 11 O 1.21285 * 119.99624 * 0.02562 * 10 6 5 12 12 N 1.34773 * 120.00068 * 180.02562 * 10 6 5 13 13 C 1.46500 * 119.99996 * 179.97438 * 12 10 6 14 14 H 1.09001 * 110.64277 * 36.68830 * 13 12 10 15 15 C 1.55159 * 110.71947 * 160.02191 * 13 12 10 16 16 C 1.54912 * 101.57963 * 153.86817 * 15 13 12 17 17 N 1.47422 * 104.82841 * 322.98583 * 16 15 13 18 18 C 1.36940 * 125.64886 * 204.16074 * 17 16 15 19 19 H 1.08002 * 120.00240 * 179.97438 * 18 17 16 20 20 C 1.38818 * 119.99626 * 359.96653 * 18 17 16 21 21 N 1.31620 * 120.00098 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99773 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46712 * 90.00364 * 22 20 18 24 24 H 1.48497 * 109.47063 * 210.00383 * 22 20 18 25 25 H 1.48496 * 109.47084 * 330.00121 * 22 20 18 26 26 C 1.47021 * 108.70563 * 24.13868 * 17 16 15 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46952 * 299.99863 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00035 * 1 2 3 30 30 H 1.09004 * 109.47261 * 240.00137 * 2 1 3 31 31 H 1.09002 * 109.47153 * 119.99965 * 2 1 3 32 32 H 1.09004 * 109.46930 * 59.99935 * 3 2 1 33 33 H 1.08992 * 109.47060 * 300.00021 * 3 2 1 34 34 H 1.09000 * 109.47437 * 60.00670 * 4 3 2 35 35 H 1.08992 * 109.47514 * 300.00067 * 4 3 2 36 36 H 1.09004 * 109.46930 * 60.00259 * 5 4 3 37 37 H 1.09002 * 109.47067 * 300.00341 * 5 4 3 38 38 H 1.09004 * 109.47368 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.47108 * 299.99708 * 7 6 5 40 40 H 1.09001 * 109.47367 * 59.99406 * 7 6 5 41 41 H 1.09001 * 109.46922 * 300.00374 * 8 6 5 42 42 H 1.09000 * 109.47140 * 180.02562 * 8 6 5 43 43 H 1.09001 * 109.47002 * 59.99738 * 9 8 6 44 44 H 1.08993 * 109.46955 * 180.02562 * 9 8 6 45 45 H 1.09000 * 109.47050 * 300.00004 * 9 8 6 46 46 H 0.96998 * 119.99906 * 359.97438 * 12 10 6 47 47 H 1.09004 * 111.00516 * 271.94093 * 15 13 12 48 48 H 1.09000 * 111.00307 * 35.79410 * 15 13 12 49 49 H 1.09007 * 110.36141 * 204.15263 * 16 15 13 50 50 H 1.08996 * 110.46275 * 81.87660 * 16 15 13 51 51 H 0.97003 * 119.99618 * 180.02562 * 21 20 18 52 52 H 1.09001 * 109.87945 * 239.52015 * 26 17 16 53 53 H 1.08993 * 109.88542 * 118.35205 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8851 0.0000 7 6 6.1200 2.1643 1.2495 8 6 6.1200 2.1633 -1.2489 9 6 5.6100 2.8840 -2.4985 10 6 6.1123 4.3059 0.0000 11 8 5.3241 5.2277 0.0005 12 7 7.4374 4.5522 -0.0005 13 6 7.9257 5.9334 -0.0011 14 1 7.2828 6.5685 0.6084 15 6 9.3947 5.9965 0.4942 16 6 9.9018 7.2852 -0.1998 17 7 9.2504 7.2829 -1.5223 18 6 9.7123 7.9242 -2.6407 19 1 9.1598 7.8607 -3.5665 20 6 10.8906 8.6559 -2.5842 21 7 11.5641 8.7329 -1.4560 22 14 11.5210 9.5301 -4.1099 23 1 10.9614 10.9047 -4.1595 24 1 13.0036 9.6007 -4.0629 25 1 11.0993 8.7799 -5.3201 26 6 8.0230 6.4775 -1.4419 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 3.7163 3.3993 0.8896 37 1 3.7170 3.3983 -0.8904 38 1 7.2100 2.1640 1.2494 39 1 5.7566 2.6786 2.1393 40 1 5.7566 1.1367 1.2500 41 1 5.7567 1.1356 -1.2484 42 1 7.2100 2.1629 -1.2487 43 1 5.9733 3.9117 -2.4989 44 1 5.9729 2.3695 -3.3882 45 1 4.5200 2.8839 -2.4985 46 1 8.0677 3.8149 -0.0005 47 1 9.4375 6.0943 1.5790 48 1 9.9576 5.1251 0.1596 49 1 10.9858 7.2549 -0.3108 50 1 9.6039 8.1664 0.3683 51 1 12.3872 9.2446 -1.4166 52 1 8.0764 5.6490 -2.1482 53 1 7.1560 7.1001 -1.6624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732153426.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:49 Heat of formation + Delta-G solvation = -50.788996 kcal Electronic energy + Delta-G solvation = -26973.577637 eV Core-core repulsion = 23458.465907 eV Total energy + Delta-G solvation = -3515.111729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40120 -37.83128 -36.74328 -35.28755 -33.96696 -31.92540 -31.38461 -30.25391 -29.10741 -27.08852 -26.57822 -24.79358 -23.98126 -23.20261 -21.70635 -21.03424 -20.45010 -19.79517 -18.64848 -17.02566 -16.41783 -16.13744 -16.05871 -15.39481 -14.94521 -14.60016 -14.35637 -14.18842 -13.90184 -13.68251 -13.30411 -13.22634 -13.17211 -12.82505 -12.55457 -12.38044 -12.12210 -11.98969 -11.89255 -11.84439 -11.60763 -11.45487 -11.27180 -11.11036 -11.03757 -10.91243 -10.86339 -10.80126 -10.79614 -10.50427 -10.44599 -10.40199 -10.11120 -9.81221 -9.59352 -9.32022 -8.67277 -8.64057 -6.82745 -5.65093 -3.06351 2.90006 3.39850 3.41819 3.46191 3.48173 4.39629 4.49569 4.58752 4.63407 4.68997 4.76952 4.86098 5.04323 5.09191 5.19929 5.25967 5.35056 5.37122 5.44817 5.46504 5.47809 5.51364 5.53554 5.56262 5.61347 5.71368 5.73352 5.79011 5.81492 5.82903 5.84720 5.89329 5.95301 6.00445 6.02621 6.09073 6.18881 6.23349 6.23503 6.40948 6.42780 6.49731 6.61173 6.78093 7.06241 7.48353 7.62888 7.77761 7.86683 8.34940 8.51517 9.22598 9.83242 10.47636 11.39105 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.028399 B = 0.002551 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.709244 B =10975.052036 C =11410.379034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.096 4.096 6 C -0.079 4.079 7 C -0.142 4.142 8 C -0.111 4.111 9 C -0.159 4.159 10 C 0.522 3.478 11 O -0.542 6.542 12 N -0.715 5.715 13 C 0.131 3.869 14 H 0.089 0.911 15 C -0.149 4.149 16 C 0.153 3.847 17 N -0.603 5.603 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.924 5.924 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.130 3.870 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.396 0.604 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.110 0.890 50 H 0.015 0.985 51 H 0.252 0.748 52 H 0.024 0.976 53 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.433 -19.652 5.562 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.160 4.160 5 C -0.134 4.134 6 C -0.082 4.082 7 C -0.200 4.200 8 C -0.149 4.149 9 C -0.216 4.216 10 C 0.308 3.692 11 O -0.418 6.418 12 N -0.366 5.366 13 C 0.027 3.973 14 H 0.107 0.893 15 C -0.188 4.188 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.347 4.347 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.573 5.573 22 Si 0.746 3.254 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.003 3.997 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.230 0.770 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.128 0.872 50 H 0.033 0.967 51 H 0.063 0.937 52 H 0.042 0.958 53 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.822 -18.834 5.488 24.588 hybrid contribution 0.628 0.230 -0.772 1.022 sum -14.194 -18.604 4.716 23.871 Atomic orbital electron populations 1.21784 0.96089 1.01392 1.01839 1.21537 0.95708 0.97146 1.01827 1.21619 0.95568 0.96443 1.02201 1.21747 0.95183 0.96881 1.02164 1.21444 0.91932 0.96466 1.03518 1.20868 0.97516 0.92674 0.97176 1.21908 1.01167 1.00649 0.96250 1.21617 1.00703 0.99430 0.93132 1.21871 1.01550 1.01128 0.97035 1.20452 0.82456 0.90816 0.75466 1.90689 1.55327 1.46267 1.49545 1.46089 1.06769 1.08923 1.74800 1.22070 0.95651 0.81589 0.98005 0.89336 1.23310 0.93757 1.02062 0.99680 1.21934 1.01260 0.90152 0.83865 1.44454 1.22329 1.58161 1.08055 1.19087 1.04182 1.23181 0.88300 0.90516 1.24790 0.97844 1.00718 0.97459 1.69773 1.17843 1.45581 1.24081 0.86053 0.77886 0.79572 0.81890 1.21618 1.21656 1.20720 1.21589 0.90467 0.94192 0.93453 0.92975 0.92797 0.92772 0.92152 0.92194 0.92053 0.92005 0.91656 0.91781 0.91435 0.90859 0.92180 0.92096 0.91264 0.90742 0.91593 0.92254 0.92538 0.92190 0.76966 0.91815 0.91729 0.87220 0.96699 0.93730 0.95759 0.95669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.92 5.21 -26.73 -0.14 -1.06 16 4 C -0.12 -0.96 4.51 -26.73 -0.12 -1.08 16 5 C -0.10 -1.01 3.21 -26.73 -0.09 -1.09 16 6 C -0.08 -0.84 0.43 -155.66 -0.07 -0.91 16 7 C -0.14 -1.23 8.02 37.16 0.30 -0.93 16 8 C -0.11 -1.06 4.54 -26.73 -0.12 -1.18 16 9 C -0.16 -1.77 9.31 37.16 0.35 -1.43 16 10 C 0.52 7.80 5.21 -10.99 -0.06 7.74 16 11 O -0.54 -10.32 15.71 5.55 0.09 -10.23 16 12 N -0.72 -10.56 4.92 -52.03 -0.26 -10.81 16 13 C 0.13 2.43 3.24 -66.10 -0.21 2.22 16 14 H 0.09 1.76 7.69 -51.93 -0.40 1.36 16 15 C -0.15 -2.74 6.69 -24.58 -0.16 -2.91 16 16 C 0.15 3.71 5.89 -2.53 -0.01 3.70 16 17 N -0.60 -15.82 3.39 -170.08 -0.58 -16.39 16 18 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 21 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 22 Si 0.92 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.13 2.91 6.99 -3.07 -0.02 2.89 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 35 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 36 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.07 0.88 6.39 -51.93 -0.33 0.55 16 38 H 0.06 0.48 7.57 -51.93 -0.39 0.08 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 41 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 42 H 0.07 0.61 7.56 -51.93 -0.39 0.22 16 43 H 0.06 0.84 7.22 -51.93 -0.37 0.46 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 46 H 0.40 4.85 7.35 -40.82 -0.30 4.55 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.06 1.12 8.00 -51.93 -0.42 0.70 16 49 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 50 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 52 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 53 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -31.67 399.61 -9.63 -41.29 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -10.04 Total: 1.73 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.40 Total: -2.49 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.27 Total: -53.62 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.67 -9.63 -41.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732153426.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.495 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds