Wall clock time and date at job start Fri Apr 10 2020 22:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46592 * 2 1 4 4 C 1.52999 * 109.47319 * 302.50478 * 3 2 1 5 5 C 1.53005 * 109.47224 * 295.58144 * 4 3 2 6 6 C 1.52999 * 109.47345 * 62.51111 * 3 2 1 7 7 C 1.50692 * 109.47650 * 64.99496 * 6 3 2 8 8 O 1.21286 * 119.99777 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00148 * 180.02562 * 7 6 3 10 10 C 1.46926 * 120.62924 * 355.39607 * 9 7 6 11 11 C 1.53191 * 108.77175 * 126.41662 * 10 9 7 12 12 C 1.53047 * 109.31478 * 54.63702 * 11 10 9 13 13 C 1.53039 * 109.53538 * 298.63510 * 12 11 10 14 14 C 1.46931 * 120.63025 * 175.42467 * 9 7 6 15 15 H 1.08996 * 109.58437 * 113.79633 * 14 9 7 16 16 C 1.52999 * 109.58418 * 353.37016 * 14 9 7 17 17 H 1.08990 * 109.47292 * 312.49626 * 16 14 9 18 18 C 1.53001 * 109.46930 * 192.49629 * 16 14 9 19 19 N 1.46502 * 109.47414 * 72.50059 * 16 14 9 20 20 C 1.36936 * 119.99995 * 195.96382 * 19 16 14 21 21 H 1.07997 * 120.00185 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99521 * 179.97438 * 20 19 16 23 23 N 1.31616 * 120.00428 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99710 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46920 * 59.99844 * 24 22 20 26 26 H 1.48496 * 109.46939 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47217 * 300.00189 * 24 22 20 28 28 H 1.08997 * 109.47699 * 57.09306 * 1 2 3 29 29 H 1.09006 * 109.46829 * 177.09548 * 1 2 3 30 30 H 1.08996 * 109.47046 * 297.09006 * 1 2 3 31 31 H 1.08995 * 109.47250 * 239.99970 * 2 1 3 32 32 H 1.08998 * 109.47096 * 119.99898 * 2 1 3 33 33 H 1.09007 * 109.46984 * 182.50471 * 3 2 1 34 34 H 1.08993 * 109.47179 * 55.58367 * 4 3 2 35 35 H 1.08997 * 109.47354 * 175.58337 * 4 3 2 36 36 H 1.08991 * 109.47425 * 185.52986 * 5 4 3 37 37 H 1.09001 * 109.47408 * 305.53239 * 5 4 3 38 38 H 1.09009 * 109.46722 * 65.52581 * 5 4 3 39 39 H 1.09003 * 109.46915 * 304.99084 * 6 3 2 40 40 H 1.08996 * 109.46959 * 185.00121 * 6 3 2 41 41 H 1.08995 * 109.58893 * 6.63067 * 10 9 7 42 42 H 1.08997 * 109.70523 * 246.26983 * 10 9 7 43 43 H 1.08997 * 109.50226 * 294.68471 * 11 10 9 44 44 H 1.09002 * 109.49948 * 174.58498 * 11 10 9 45 45 H 1.08996 * 109.46226 * 178.61357 * 12 11 10 46 46 H 1.09000 * 109.44956 * 58.64268 * 12 11 10 47 47 H 1.08997 * 109.49900 * 181.31688 * 13 12 11 48 48 H 1.09002 * 109.49690 * 301.41197 * 13 12 11 49 49 H 1.09007 * 109.47227 * 306.03872 * 18 16 14 50 50 H 1.09003 * 109.47499 * 66.03913 * 18 16 14 51 51 H 1.08999 * 109.47179 * 186.03995 * 18 16 14 52 52 H 0.97003 * 119.99583 * 15.95488 * 19 16 14 53 53 H 0.96998 * 120.00095 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4790 2.1818 -1.2165 5 6 2.0257 1.5460 -2.4963 6 6 1.5821 2.1453 1.2796 7 6 2.2328 1.4925 2.4717 8 8 2.9888 0.5574 2.3134 9 7 1.9748 1.9477 3.7137 10 6 1.1418 3.1411 3.9156 11 6 0.0074 2.7924 4.8842 12 6 0.6005 2.2147 6.1714 13 6 1.3717 0.9327 5.8493 14 6 2.5216 1.2603 4.8916 15 1 3.2405 1.9089 5.3921 16 6 3.2108 -0.0343 4.4559 17 1 2.5590 -0.5816 3.7752 18 6 3.5023 -0.8959 5.6861 19 7 4.4680 0.2868 3.7757 20 6 5.0969 -0.6626 3.0152 21 1 4.6663 -1.6482 2.9172 22 6 6.2879 -0.3582 2.3703 23 7 6.8123 0.8431 2.4894 24 14 7.1462 -1.6535 1.3335 25 1 6.2443 -2.0864 0.2360 26 1 8.3895 -1.0819 0.7568 27 1 7.4872 -2.8221 2.1839 28 1 -0.3634 0.5583 -0.8627 29 1 -0.3633 -1.0264 -0.0521 30 1 -0.3633 0.4680 0.9149 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1290 1.4430 -0.0449 34 1 0.3912 2.1139 -1.2131 35 1 1.7778 3.2291 -1.1748 36 1 1.7058 2.1315 -3.3582 37 1 3.1147 1.5252 -2.4552 38 1 1.6461 0.5282 -2.5872 39 1 0.4985 2.0675 1.3691 40 1 1.8686 3.1962 1.2394 41 1 0.7225 3.4597 2.9613 42 1 1.7467 3.9447 4.3355 43 1 -0.6504 2.0551 4.4239 44 1 -0.5613 3.6925 5.1177 45 1 -0.2033 1.9886 6.8721 46 1 1.2773 2.9431 6.6180 47 1 1.7741 0.5093 6.7695 48 1 0.7011 0.2130 5.3798 49 1 4.0644 -0.3112 6.4144 50 1 2.5628 -1.2239 6.1309 51 1 4.0874 -1.7664 5.3897 52 1 4.8549 1.1719 3.8639 53 1 7.6447 1.0557 2.0390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752160090.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:01 Heat of formation + Delta-G solvation = -9.187797 kcal Electronic energy + Delta-G solvation = -29155.426342 eV Core-core repulsion = 25642.118576 eV Total energy + Delta-G solvation = -3513.307766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.14759 -37.78653 -36.14786 -35.04759 -32.51007 -32.12764 -30.95577 -29.81499 -29.46579 -27.70045 -25.48835 -24.15954 -24.02539 -23.17396 -22.54065 -20.59372 -19.93181 -18.87698 -18.26334 -16.68595 -16.16623 -15.70183 -15.34030 -14.91249 -14.67208 -14.46868 -14.22123 -13.73003 -13.41413 -13.39598 -13.25854 -13.01584 -12.64797 -12.63910 -12.43861 -12.13200 -12.06926 -11.89302 -11.74696 -11.47526 -11.33347 -11.13080 -11.07524 -10.86883 -10.80631 -10.77099 -10.59591 -10.52526 -10.36079 -10.12003 -10.05244 -10.01826 -9.96013 -9.61109 -9.34544 -8.56492 -8.06251 -7.83265 -6.38113 -5.41556 -2.61010 3.56347 3.59277 3.62889 3.65683 3.67089 4.81504 4.84381 4.92679 4.97971 5.04830 5.12886 5.18393 5.26990 5.41845 5.45917 5.50222 5.54812 5.58555 5.68332 5.69072 5.78943 5.82884 5.85636 5.88529 5.90573 5.97472 5.97619 6.00329 6.08869 6.12698 6.14531 6.15355 6.18752 6.20678 6.25129 6.38217 6.42083 6.48273 6.52602 6.54822 6.64156 6.83686 6.88826 6.99228 7.05141 7.13131 7.46975 8.00612 8.17460 8.75642 9.22699 9.87579 10.45783 10.81368 11.83068 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.008803 B = 0.007553 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.934184 B = 3706.205838 C = 6041.853164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.070 4.070 4 C -0.120 4.120 5 C -0.151 4.151 6 C -0.132 4.132 7 C 0.470 3.530 8 O -0.426 6.426 9 N -0.618 5.618 10 C 0.112 3.888 11 C -0.133 4.133 12 C -0.118 4.118 13 C -0.127 4.127 14 C 0.148 3.852 15 H 0.061 0.939 16 C 0.184 3.816 17 H 0.058 0.942 18 C -0.169 4.169 19 N -0.689 5.689 20 C -0.175 4.175 21 H 0.060 0.940 22 C -0.027 4.027 23 N -0.946 5.946 24 Si 0.894 3.106 25 H -0.292 1.292 26 H -0.297 1.297 27 H -0.293 1.293 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.041 0.959 50 H 0.035 0.965 51 H 0.055 0.945 52 H 0.376 0.624 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.584 5.846 1.024 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.089 4.089 4 C -0.158 4.158 5 C -0.209 4.209 6 C -0.172 4.172 7 C 0.256 3.744 8 O -0.293 6.293 9 N -0.357 5.357 10 C -0.012 4.012 11 C -0.172 4.172 12 C -0.156 4.156 13 C -0.166 4.166 14 C 0.044 3.956 15 H 0.079 0.921 16 C 0.074 3.926 17 H 0.075 0.925 18 C -0.229 4.229 19 N -0.329 5.329 20 C -0.307 4.307 21 H 0.078 0.922 22 C -0.220 4.220 23 N -0.598 5.598 24 Si 0.728 3.272 25 H -0.219 1.219 26 H -0.223 1.223 27 H -0.221 1.221 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.074 0.926 52 H 0.210 0.790 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.077 5.134 0.775 17.849 hybrid contribution 0.587 -0.126 -0.551 0.815 sum -16.490 5.008 0.225 17.235 Atomic orbital electron populations 1.21892 0.97311 1.00726 1.00968 1.21634 0.94335 0.96605 1.03516 1.20912 1.01642 0.94622 0.91715 1.21632 1.00243 0.99099 0.94796 1.21780 1.01546 1.00672 0.96868 1.21762 1.00692 1.00295 0.94434 1.20630 0.83255 0.87117 0.83447 1.91243 1.28761 1.25457 1.83847 1.47961 1.52836 1.28992 1.05879 1.21536 0.91966 0.88142 0.99521 1.21914 0.97858 1.00897 0.96524 1.21511 0.99450 0.97748 0.96885 1.22004 0.97699 0.97219 0.99706 1.21466 0.93565 0.95197 0.85385 0.92093 1.20350 0.89716 0.91133 0.91353 0.92468 1.22583 0.99260 1.01364 0.99741 1.42215 1.21264 1.13680 1.55759 1.18927 1.00331 0.92352 1.19113 0.92182 1.24495 0.98998 0.96337 1.02143 1.69627 1.21354 1.19287 1.49522 0.86418 0.78904 0.81116 0.80787 1.21900 1.22301 1.22060 0.93040 0.93581 0.93229 0.92625 0.89447 0.89827 0.92076 0.92579 0.93464 0.92524 0.92634 0.90265 0.90645 0.90386 0.92292 0.91792 0.91534 0.92290 0.92045 0.90839 0.91831 0.93979 0.94647 0.92580 0.79042 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.22 37.16 0.34 -1.57 16 2 C -0.12 -1.94 5.16 -26.73 -0.14 -2.08 16 3 C -0.07 -1.08 1.82 -90.62 -0.16 -1.25 16 4 C -0.12 -1.49 5.13 -26.73 -0.14 -1.63 16 5 C -0.15 -1.87 9.51 37.16 0.35 -1.51 16 6 C -0.13 -1.89 3.35 -27.89 -0.09 -1.98 16 7 C 0.47 8.49 7.13 -10.99 -0.08 8.41 16 8 O -0.43 -9.61 6.81 5.55 0.04 -9.57 16 9 N -0.62 -9.73 2.97 -165.23 -0.49 -10.22 16 10 C 0.11 1.31 6.35 -3.71 -0.02 1.29 16 11 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 12 C -0.12 -1.25 5.88 -26.69 -0.16 -1.40 16 13 C -0.13 -1.66 4.45 -26.61 -0.12 -1.78 16 14 C 0.15 2.46 2.62 -67.60 -0.18 2.28 16 15 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 16 C 0.18 3.78 1.82 -67.93 -0.12 3.66 16 17 H 0.06 1.29 6.40 -51.93 -0.33 0.96 16 18 C -0.17 -3.17 8.48 37.16 0.32 -2.86 16 19 N -0.69 -17.60 3.24 -53.43 -0.17 -17.77 16 20 C -0.18 -5.03 8.09 -15.06 -0.12 -5.15 16 21 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 22 C -0.03 -0.80 5.50 -17.43 -0.10 -0.90 16 23 N -0.95 -29.87 13.06 55.49 0.72 -29.14 16 24 Si 0.89 23.97 29.55 -169.99 -5.02 18.94 16 25 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 26 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 27 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 28 H 0.05 0.58 6.12 -51.93 -0.32 0.26 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.61 6.53 -51.93 -0.34 0.27 16 31 H 0.06 0.88 6.80 -51.93 -0.35 0.52 16 32 H 0.09 1.68 5.91 -51.93 -0.31 1.37 16 33 H 0.08 1.63 7.96 -51.92 -0.41 1.22 16 34 H 0.06 0.68 6.08 -51.93 -0.32 0.36 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.68 6.89 -51.92 -0.36 0.32 16 39 H 0.08 0.97 6.05 -51.93 -0.31 0.65 16 40 H 0.08 1.01 7.76 -51.93 -0.40 0.61 16 41 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.92 6.83 -51.93 -0.35 0.57 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.03 0.55 6.84 -51.93 -0.36 0.20 16 51 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 52 H 0.38 10.51 7.70 -40.82 -0.31 10.20 16 53 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -32.12 383.08 -9.55 -41.67 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -9.81 Total: 8.27 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.58 Total: -7.94 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.06 Total: -57.14 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.04 Total: -9.57 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.02 Total: 18.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.12 -9.55 -41.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752160090.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.479 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds