Wall clock time and date at job start Fri Apr 10 2020 22:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46592 * 2 1 4 4 C 1.52999 * 109.47319 * 302.50478 * 3 2 1 5 5 C 1.53005 * 109.47224 * 295.58144 * 4 3 2 6 6 C 1.52999 * 109.47345 * 62.51111 * 3 2 1 7 7 C 1.50692 * 109.47650 * 64.99496 * 6 3 2 8 8 O 1.21286 * 119.99777 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00148 * 180.02562 * 7 6 3 10 10 C 1.46926 * 120.62924 * 355.39607 * 9 7 6 11 11 C 1.53191 * 108.77175 * 126.41662 * 10 9 7 12 12 C 1.53047 * 109.31478 * 54.63702 * 11 10 9 13 13 C 1.53039 * 109.53538 * 298.63510 * 12 11 10 14 14 C 1.46931 * 120.63025 * 175.42467 * 9 7 6 15 15 H 1.08996 * 109.58437 * 113.79633 * 14 9 7 16 16 C 1.52999 * 109.58418 * 353.37016 * 14 9 7 17 17 H 1.08990 * 109.47292 * 312.49626 * 16 14 9 18 18 C 1.53001 * 109.46930 * 192.49629 * 16 14 9 19 19 N 1.46502 * 109.47414 * 72.50059 * 16 14 9 20 20 C 1.36936 * 119.99995 * 195.96382 * 19 16 14 21 21 H 1.07997 * 120.00185 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99521 * 179.97438 * 20 19 16 23 23 N 1.31616 * 120.00428 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99710 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46920 * 59.99844 * 24 22 20 26 26 H 1.48496 * 109.46939 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47217 * 300.00189 * 24 22 20 28 28 H 1.08997 * 109.47699 * 57.09306 * 1 2 3 29 29 H 1.09006 * 109.46829 * 177.09548 * 1 2 3 30 30 H 1.08996 * 109.47046 * 297.09006 * 1 2 3 31 31 H 1.08995 * 109.47250 * 239.99970 * 2 1 3 32 32 H 1.08998 * 109.47096 * 119.99898 * 2 1 3 33 33 H 1.09007 * 109.46984 * 182.50471 * 3 2 1 34 34 H 1.08993 * 109.47179 * 55.58367 * 4 3 2 35 35 H 1.08997 * 109.47354 * 175.58337 * 4 3 2 36 36 H 1.08991 * 109.47425 * 185.52986 * 5 4 3 37 37 H 1.09001 * 109.47408 * 305.53239 * 5 4 3 38 38 H 1.09009 * 109.46722 * 65.52581 * 5 4 3 39 39 H 1.09003 * 109.46915 * 304.99084 * 6 3 2 40 40 H 1.08996 * 109.46959 * 185.00121 * 6 3 2 41 41 H 1.08995 * 109.58893 * 6.63067 * 10 9 7 42 42 H 1.08997 * 109.70523 * 246.26983 * 10 9 7 43 43 H 1.08997 * 109.50226 * 294.68471 * 11 10 9 44 44 H 1.09002 * 109.49948 * 174.58498 * 11 10 9 45 45 H 1.08996 * 109.46226 * 178.61357 * 12 11 10 46 46 H 1.09000 * 109.44956 * 58.64268 * 12 11 10 47 47 H 1.08997 * 109.49900 * 181.31688 * 13 12 11 48 48 H 1.09002 * 109.49690 * 301.41197 * 13 12 11 49 49 H 1.09007 * 109.47227 * 306.03872 * 18 16 14 50 50 H 1.09003 * 109.47499 * 66.03913 * 18 16 14 51 51 H 1.08999 * 109.47179 * 186.03995 * 18 16 14 52 52 H 0.97003 * 119.99583 * 15.95488 * 19 16 14 53 53 H 0.96998 * 120.00095 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4790 2.1818 -1.2165 5 6 2.0257 1.5460 -2.4963 6 6 1.5821 2.1453 1.2796 7 6 2.2328 1.4925 2.4717 8 8 2.9888 0.5574 2.3134 9 7 1.9748 1.9477 3.7137 10 6 1.1418 3.1411 3.9156 11 6 0.0074 2.7924 4.8842 12 6 0.6005 2.2147 6.1714 13 6 1.3717 0.9327 5.8493 14 6 2.5216 1.2603 4.8916 15 1 3.2405 1.9089 5.3921 16 6 3.2108 -0.0343 4.4559 17 1 2.5590 -0.5816 3.7752 18 6 3.5023 -0.8959 5.6861 19 7 4.4680 0.2868 3.7757 20 6 5.0969 -0.6626 3.0152 21 1 4.6663 -1.6482 2.9172 22 6 6.2879 -0.3582 2.3703 23 7 6.8123 0.8431 2.4894 24 14 7.1462 -1.6535 1.3335 25 1 6.2443 -2.0864 0.2360 26 1 8.3895 -1.0819 0.7568 27 1 7.4872 -2.8221 2.1839 28 1 -0.3634 0.5583 -0.8627 29 1 -0.3633 -1.0264 -0.0521 30 1 -0.3633 0.4680 0.9149 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1290 1.4430 -0.0449 34 1 0.3912 2.1139 -1.2131 35 1 1.7778 3.2291 -1.1748 36 1 1.7058 2.1315 -3.3582 37 1 3.1147 1.5252 -2.4552 38 1 1.6461 0.5282 -2.5872 39 1 0.4985 2.0675 1.3691 40 1 1.8686 3.1962 1.2394 41 1 0.7225 3.4597 2.9613 42 1 1.7467 3.9447 4.3355 43 1 -0.6504 2.0551 4.4239 44 1 -0.5613 3.6925 5.1177 45 1 -0.2033 1.9886 6.8721 46 1 1.2773 2.9431 6.6180 47 1 1.7741 0.5093 6.7695 48 1 0.7011 0.2130 5.3798 49 1 4.0644 -0.3112 6.4144 50 1 2.5628 -1.2239 6.1309 51 1 4.0874 -1.7664 5.3897 52 1 4.8549 1.1719 3.8639 53 1 7.6447 1.0557 2.0390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752160090.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:00 Heat of formation + Delta-G solvation = -27.755184 kcal Electronic energy + Delta-G solvation = -29156.231484 eV Core-core repulsion = 25642.118576 eV Total energy + Delta-G solvation = -3514.112908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47436 -38.99359 -37.41967 -36.71828 -34.18298 -33.54310 -32.02837 -31.46549 -30.67482 -29.32065 -26.75061 -25.93770 -25.15889 -24.30770 -24.00325 -21.77110 -21.33557 -20.20481 -19.60595 -18.66157 -17.47887 -16.96043 -16.67353 -16.55045 -16.01157 -15.69977 -15.47554 -15.30953 -14.83473 -14.64212 -14.43151 -14.40186 -14.08334 -13.73019 -13.68157 -13.57857 -13.44121 -13.30379 -12.94319 -12.81988 -12.78792 -12.68004 -12.50891 -12.40207 -12.23922 -12.13215 -11.91761 -11.85628 -11.66236 -11.56314 -11.38237 -11.26496 -11.26214 -11.12141 -11.07450 -10.71178 -9.58774 -9.20769 -8.46652 -7.73682 -4.89232 1.41003 1.44619 1.49332 2.22882 2.35472 2.66809 3.59652 3.71388 3.88006 3.94607 3.98141 4.02660 4.06502 4.19368 4.31758 4.35922 4.41508 4.42669 4.45913 4.50354 4.59830 4.67832 4.68774 4.71297 4.77364 4.81847 4.88160 4.92185 4.96550 4.98322 5.03899 5.10604 5.10742 5.11621 5.18788 5.20436 5.22469 5.30950 5.34520 5.35301 5.43789 5.46563 5.51882 5.57720 5.60697 5.65746 5.77379 6.05590 6.47426 6.88880 7.53661 7.87232 8.33785 8.56552 9.51771 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.008803 B = 0.007553 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.934184 B = 3706.205838 C = 6041.853164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.066 4.066 4 C -0.112 4.112 5 C -0.152 4.152 6 C -0.121 4.121 7 C 0.460 3.540 8 O -0.485 6.485 9 N -0.619 5.619 10 C 0.104 3.896 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.119 4.119 14 C 0.151 3.849 15 H 0.046 0.954 16 C 0.183 3.817 17 H 0.036 0.964 18 C -0.159 4.159 19 N -0.692 5.692 20 C -0.154 4.154 21 H 0.051 0.949 22 C -0.091 4.091 23 N -0.980 5.980 24 Si 0.949 3.051 25 H -0.294 1.294 26 H -0.300 1.300 27 H -0.284 1.284 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.026 0.974 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.053 0.947 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.044 0.956 50 H 0.071 0.929 51 H 0.027 0.973 52 H 0.361 0.639 53 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.373 7.169 1.591 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.149 4.149 5 C -0.210 4.210 6 C -0.161 4.161 7 C 0.247 3.753 8 O -0.357 6.357 9 N -0.356 5.356 10 C -0.019 4.019 11 C -0.164 4.164 12 C -0.153 4.153 13 C -0.158 4.158 14 C 0.047 3.953 15 H 0.064 0.936 16 C 0.075 3.925 17 H 0.054 0.946 18 C -0.219 4.219 19 N -0.329 5.329 20 C -0.287 4.287 21 H 0.069 0.931 22 C -0.281 4.281 23 N -0.635 5.635 24 Si 0.782 3.218 25 H -0.222 1.222 26 H -0.227 1.227 27 H -0.211 1.211 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.090 0.910 51 H 0.047 0.953 52 H 0.192 0.808 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -20.937 6.457 1.391 21.954 hybrid contribution 1.671 -0.546 -0.685 1.887 sum -19.266 5.911 0.705 20.164 Atomic orbital electron populations 1.21804 0.94100 1.01558 1.02323 1.21519 0.97008 0.96339 1.00896 1.20809 0.98331 0.95255 0.94136 1.21591 1.01551 0.98921 0.92823 1.21790 0.99990 1.01192 0.97991 1.21729 1.02137 1.00276 0.91950 1.21358 0.82580 0.86410 0.84955 1.91214 1.31567 1.28107 1.84792 1.48096 1.52685 1.29902 1.04881 1.21873 0.92186 0.86339 1.01452 1.21886 0.96976 1.02235 0.95312 1.21514 0.99785 0.96110 0.97862 1.21930 0.96292 0.98938 0.98598 1.21308 0.94718 0.92848 0.86437 0.93563 1.20450 0.87602 0.93510 0.90933 0.94621 1.22431 1.00674 0.99831 0.98951 1.42281 1.22749 1.12189 1.55698 1.19077 0.99610 0.92322 1.17698 0.93133 1.25083 1.00391 0.98150 1.04456 1.69776 1.21590 1.20931 1.51234 0.85515 0.77572 0.79339 0.79387 1.22185 1.22661 1.21120 0.90739 0.93275 0.92438 0.93740 0.93668 0.95495 0.89337 0.91656 0.91073 0.95014 0.92746 0.86929 0.89164 0.88394 0.92029 0.91658 0.88508 0.89971 0.91923 0.90196 0.92029 0.93700 0.90995 0.95341 0.80786 0.95319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.22 71.98 0.66 -2.59 16 2 C -0.12 -3.87 5.16 30.59 0.16 -3.71 16 3 C -0.07 -2.07 1.82 -10.79 -0.02 -2.09 16 4 C -0.11 -2.56 5.13 30.60 0.16 -2.41 16 5 C -0.15 -3.63 9.51 71.98 0.68 -2.95 16 6 C -0.12 -3.33 3.35 29.85 0.10 -3.23 16 7 C 0.46 16.84 7.13 87.65 0.62 17.46 16 8 O -0.49 -23.16 6.81 -3.05 -0.02 -23.18 16 9 N -0.62 -18.94 2.97 -795.05 -2.36 -21.31 16 10 C 0.10 2.11 6.35 86.36 0.55 2.66 16 11 C -0.13 -1.93 6.08 30.67 0.19 -1.74 16 12 C -0.12 -1.98 5.88 30.62 0.18 -1.80 16 13 C -0.12 -2.82 4.45 30.67 0.14 -2.69 16 14 C 0.15 4.98 2.62 44.97 0.12 5.10 16 15 H 0.05 1.67 8.11 -2.39 -0.02 1.65 16 16 C 0.18 7.74 1.82 44.99 0.08 7.82 16 17 H 0.04 1.69 6.40 -2.39 -0.02 1.67 16 18 C -0.16 -5.99 8.48 71.98 0.61 -5.38 16 19 N -0.69 -37.09 3.24 -322.95 -1.05 -38.14 16 20 C -0.15 -9.28 8.09 84.03 0.68 -8.60 16 21 H 0.05 3.09 7.83 -2.91 -0.02 3.07 16 22 C -0.09 -5.74 5.50 84.86 0.47 -5.28 16 23 N -0.98 -64.86 13.06 21.65 0.28 -64.58 16 24 Si 0.95 51.63 29.55 68.60 2.03 53.66 16 25 H -0.29 -15.90 7.11 99.48 0.71 -15.19 16 26 H -0.30 -16.36 7.11 99.48 0.71 -15.65 16 27 H -0.28 -14.86 7.11 99.48 0.71 -14.16 16 28 H 0.07 1.39 6.12 -2.39 -0.01 1.37 16 29 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.06 1.23 6.53 -2.39 -0.02 1.22 16 31 H 0.04 1.47 6.80 -2.39 -0.02 1.46 16 32 H 0.04 1.85 5.91 -2.39 -0.01 1.83 16 33 H 0.03 1.13 7.96 -2.38 -0.02 1.11 16 34 H 0.09 1.59 6.08 -2.39 -0.01 1.57 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 1.29 6.89 -2.38 -0.02 1.27 16 39 H 0.11 2.35 6.05 -2.39 -0.01 2.34 16 40 H 0.09 2.23 7.76 -2.39 -0.02 2.22 16 41 H 0.10 1.61 5.93 -2.39 -0.01 1.59 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.08 1.79 6.83 -2.39 -0.02 1.78 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 50 H 0.07 2.16 6.84 -2.39 -0.02 2.15 16 51 H 0.03 1.20 7.93 -2.39 -0.02 1.18 16 52 H 0.36 21.25 7.70 -92.71 -0.71 20.54 16 53 H 0.24 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -76.42 383.08 4.41 -72.01 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.16 Total: 30.95 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 5.38 Total: -9.41 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -3.13 Total: -124.03 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.02 Total: -23.18 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.03 Total: 53.66 kcal Total: -76.42 4.41 -72.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752160090.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.253 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds