Wall clock time and date at job start Fri Apr 10 2020 22:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99591 * 2 1 4 4 H 1.09003 * 109.47460 * 30.00037 * 3 2 1 5 5 C 1.50702 * 109.46978 * 269.99796 * 3 2 1 6 6 O 1.21283 * 120.00262 * 355.00493 * 5 3 2 7 7 N 1.34777 * 119.99928 * 174.72398 * 5 3 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 9 9 H 1.08999 * 110.88874 * 328.88463 * 8 7 5 10 10 C 1.55157 * 111.00905 * 205.00116 * 8 7 5 11 11 C 1.54320 * 102.94411 * 277.42918 * 10 8 7 12 12 N 1.47026 * 107.27054 * 337.80826 * 11 10 8 13 13 C 1.36937 * 125.64433 * 178.99035 * 12 11 10 14 14 H 1.08003 * 119.99352 * 179.97438 * 13 12 11 15 15 C 1.38811 * 120.00365 * 359.96423 * 13 12 11 16 16 N 1.31617 * 119.99718 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00081 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47175 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46809 * 120.00272 * 17 15 13 20 20 H 1.48495 * 109.47466 * 240.00686 * 17 15 13 21 21 C 1.47424 * 108.70091 * 358.93719 * 12 11 10 22 22 C 1.53003 * 109.47189 * 150.00312 * 3 2 1 23 23 C 1.53000 * 109.47122 * 59.99365 * 22 3 2 24 24 C 1.53003 * 109.47122 * 179.97438 * 23 22 3 25 25 C 1.53003 * 109.46830 * 60.00476 * 24 23 22 26 26 C 1.53008 * 109.47117 * 300.00061 * 25 24 23 27 27 C 1.52995 * 109.47104 * 59.99826 * 26 25 24 28 28 H 1.08997 * 109.47018 * 60.00408 * 1 2 3 29 29 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47179 * 299.99744 * 1 2 3 31 31 H 0.97000 * 120.00317 * 0.28382 * 7 5 3 32 32 H 1.09001 * 110.71556 * 35.79285 * 10 8 7 33 33 H 1.09004 * 110.71989 * 158.88430 * 10 8 7 34 34 H 1.09002 * 109.88198 * 97.21947 * 11 10 8 35 35 H 1.08993 * 109.88368 * 218.22779 * 11 10 8 36 36 H 0.97005 * 119.99978 * 179.97438 * 16 15 13 37 37 H 1.08999 * 110.36605 * 265.29154 * 21 12 11 38 38 H 1.09001 * 110.36094 * 142.97530 * 21 12 11 39 39 H 1.09000 * 109.47390 * 179.97438 * 22 3 2 40 40 H 1.09000 * 109.47322 * 300.00451 * 23 22 3 41 41 H 1.09003 * 109.46893 * 60.00574 * 23 22 3 42 42 H 1.08999 * 109.46927 * 300.00669 * 24 23 22 43 43 H 1.08989 * 109.47209 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47133 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47188 * 59.99809 * 25 24 23 46 46 H 1.09007 * 109.46729 * 300.00263 * 26 25 24 47 47 H 1.08994 * 109.47277 * 180.02562 * 26 25 24 48 48 H 1.09003 * 109.46928 * 180.02562 * 27 26 25 49 49 H 1.09000 * 109.47161 * 60.00276 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6534 3.0143 -1.6688 8 6 2.8463 3.4624 -3.0502 9 1 3.1331 2.6298 -3.6924 10 6 3.8918 4.6066 -3.1229 11 6 3.0597 5.8580 -2.7721 12 7 1.6525 5.5402 -3.0560 13 6 0.5894 6.3808 -2.8600 14 1 -0.4106 6.0518 -3.1014 15 6 0.7969 7.6554 -2.3510 16 7 2.0156 8.0563 -2.0572 17 14 -0.6535 8.8017 -2.0831 18 1 -1.9072 8.1168 -2.4884 19 1 -0.7337 9.1711 -0.6469 20 1 -0.4727 10.0283 -2.9003 21 6 1.5760 4.1674 -3.5877 22 6 3.3589 1.2634 0.7212 23 6 4.2927 0.2894 0.0000 24 6 5.6417 0.2477 0.7208 25 6 5.4348 -0.2178 2.1635 26 6 4.5009 0.7562 2.8848 27 6 3.1520 0.7978 2.1639 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.8418 3.6172 -0.9326 32 1 4.6839 4.4523 -2.3902 33 1 4.3076 4.6857 -4.1274 34 1 3.1795 6.0986 -1.7157 35 1 3.3824 6.7010 -3.3829 36 1 2.1607 8.9472 -1.7018 37 1 1.5825 4.1818 -4.6776 38 1 0.6801 3.6675 -3.2195 39 1 3.8024 2.2591 0.7208 40 1 3.8494 -0.7064 0.0000 41 1 4.4405 0.6213 -1.0277 42 1 6.0847 1.2436 0.7204 43 1 6.3070 -0.4458 0.2068 44 1 6.3956 -0.2471 2.6772 45 1 4.9917 -1.2137 2.1639 46 1 4.9440 1.7521 2.8843 47 1 4.3538 0.4248 3.9127 48 1 2.4869 1.4921 2.6775 49 1 2.7089 -0.1980 2.1643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752414165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:03 Heat of formation + Delta-G solvation = -98.468447 kcal Electronic energy + Delta-G solvation = -27555.965429 eV Core-core repulsion = 23902.953069 eV Total energy + Delta-G solvation = -3653.012360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50198 -39.73481 -38.68124 -37.84843 -35.41099 -33.86047 -32.73522 -31.60020 -30.99531 -29.19277 -28.13115 -26.98185 -26.19040 -23.63055 -23.03168 -22.03567 -21.70590 -21.15954 -20.53378 -19.01416 -18.29942 -17.80532 -17.20781 -16.91063 -16.58591 -15.87584 -15.78407 -15.61403 -15.34499 -15.12707 -14.93000 -14.87471 -14.42481 -14.17169 -13.92732 -13.84249 -13.58622 -13.14532 -12.99114 -12.90737 -12.83597 -12.77615 -12.37159 -12.25353 -12.09882 -11.99730 -11.96830 -11.94234 -11.82727 -11.60830 -11.56320 -11.30893 -11.08523 -10.88512 -10.73106 -10.23591 -10.05689 -8.87149 -7.85722 -5.20042 1.45428 1.46551 1.56240 1.58914 2.10028 2.48542 2.81091 3.33346 3.58205 3.63004 3.66948 3.76285 3.86708 3.96342 4.06529 4.11795 4.30546 4.33563 4.41004 4.43338 4.50963 4.53976 4.61476 4.66748 4.67639 4.71094 4.73699 4.77880 4.80610 4.87240 4.97486 5.03108 5.05047 5.20114 5.29391 5.32945 5.35198 5.41159 5.43982 5.46009 5.56249 5.65066 5.67355 5.76889 6.00188 6.19377 6.59319 7.11386 7.24338 7.76262 8.40764 9.24328 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.003703 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.696054 B = 7559.878274 C = 7680.751284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.366 6.366 3 C 0.080 3.920 4 H 0.097 0.903 5 C 0.493 3.507 6 O -0.573 6.573 7 N -0.698 5.698 8 C 0.141 3.859 9 H 0.097 0.903 10 C -0.133 4.133 11 C 0.185 3.815 12 N -0.620 5.620 13 C -0.242 4.242 14 H 0.072 0.928 15 C -0.057 4.057 16 N -0.945 5.945 17 Si 0.973 3.027 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.293 1.293 21 C 0.124 3.876 22 C -0.072 4.072 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.107 4.107 28 H 0.023 0.977 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.407 0.593 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.023 0.977 35 H 0.009 0.991 36 H 0.248 0.752 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -15.719 10.483 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.283 6.283 3 C 0.019 3.981 4 H 0.115 0.885 5 C 0.280 3.720 6 O -0.453 6.453 7 N -0.350 5.350 8 C 0.035 3.965 9 H 0.115 0.885 10 C -0.172 4.172 11 C 0.060 3.940 12 N -0.347 5.347 13 C -0.371 4.371 14 H 0.090 0.910 15 C -0.250 4.250 16 N -0.594 5.594 17 Si 0.802 3.198 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.220 1.220 21 C -0.003 4.003 22 C -0.091 4.091 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.144 4.144 28 H 0.042 0.958 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.243 0.757 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.041 0.959 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.972 -16.249 9.897 19.941 hybrid contribution -1.147 1.537 -0.125 1.922 sum 4.825 -14.712 9.771 18.309 Atomic orbital electron populations 1.22983 0.79995 1.04080 1.00058 1.87932 1.20819 1.25280 1.94279 1.22227 0.98396 0.86808 0.90713 0.88486 1.21806 0.75925 0.81315 0.92961 1.90650 1.51951 1.55178 1.47474 1.45858 1.66741 1.13628 1.08755 1.21911 0.95157 0.96049 0.83391 0.88467 1.23071 0.97091 0.93602 1.03388 1.20945 0.82385 0.92941 0.97709 1.44708 1.03552 1.11222 1.75190 1.19372 0.87371 0.94375 1.35993 0.90976 1.25502 0.99129 0.98713 1.01673 1.70149 1.19959 1.18733 1.50516 0.85089 0.78956 0.78653 0.77078 1.19708 1.21538 1.21968 1.22031 0.96677 0.85559 0.96022 1.21299 0.90958 1.00984 0.95851 1.21427 0.95815 0.99413 0.97689 1.21522 0.95899 1.01793 0.96144 1.21531 0.99893 0.99063 0.94981 1.21530 0.94734 1.00033 0.99131 1.21496 0.98184 1.02040 0.92691 0.95801 0.87730 0.91979 0.75731 0.88738 0.89375 0.95884 0.97310 0.94289 0.95347 0.95596 0.88841 0.92337 0.94219 0.91640 0.91840 0.91031 0.92264 0.91600 0.90811 0.91168 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.81 113.37 1.23 1.79 16 2 O -0.37 -9.77 8.54 -129.99 -1.11 -10.88 16 3 C 0.08 2.03 2.26 29.85 0.07 2.10 16 4 H 0.10 2.22 7.79 -2.39 -0.02 2.20 16 5 C 0.49 15.93 5.87 87.66 0.51 16.44 16 6 O -0.57 -22.78 16.15 15.95 0.26 -22.53 16 7 N -0.70 -22.19 5.15 -435.96 -2.25 -24.43 16 8 C 0.14 4.92 3.43 46.38 0.16 5.08 16 9 H 0.10 3.32 7.54 -2.39 -0.02 3.30 16 10 C -0.13 -4.47 6.55 31.78 0.21 -4.26 16 11 C 0.18 8.56 5.36 86.73 0.47 9.02 16 12 N -0.62 -31.18 3.39 -692.00 -2.35 -33.53 16 13 C -0.24 -13.47 10.28 84.03 0.86 -12.61 16 14 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 15 C -0.06 -3.15 5.49 84.86 0.47 -2.68 16 16 N -0.94 -54.60 10.31 21.65 0.22 -54.38 16 17 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 C 0.12 5.29 6.93 86.85 0.60 5.89 16 22 C -0.07 -1.48 2.04 -10.79 -0.02 -1.51 16 23 C -0.11 -2.36 4.81 30.60 0.15 -2.21 16 24 C -0.12 -2.03 5.92 30.60 0.18 -1.84 16 25 C -0.12 -1.72 5.92 30.60 0.18 -1.54 16 26 C -0.12 -1.66 5.92 30.60 0.18 -1.48 16 27 C -0.11 -1.80 5.06 30.59 0.15 -1.64 16 28 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 31 H 0.41 12.09 8.46 -92.71 -0.78 11.31 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 35 H 0.01 0.46 7.50 -2.39 -0.02 0.44 16 36 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.79 7.94 -2.39 -0.02 1.77 16 40 H 0.06 1.46 7.68 -2.39 -0.02 1.44 16 41 H 0.04 1.05 7.22 -2.39 -0.02 1.03 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 47 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.07 1.22 7.68 -2.39 -0.02 1.20 16 Total: -1.00 -68.26 380.34 2.32 -65.94 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.13 Total: 22.17 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.39 Total: 10.53 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -4.37 Total: -112.34 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.85 Total: -33.41 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.26 2.32 -65.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752414165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.527 kcal (2) G-P(sol) polarization free energy of solvation -68.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds