Wall clock time and date at job start Fri Apr 10 2020 22:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00227 * 2 1 4 4 H 1.09002 * 109.46765 * 15.63347 * 3 2 1 5 5 C 1.50697 * 109.47129 * 135.63014 * 3 2 1 6 6 O 1.21284 * 120.00156 * 2.50866 * 5 3 2 7 7 N 1.34778 * 120.00314 * 182.49807 * 5 3 2 8 8 C 1.46494 * 120.00214 * 184.55227 * 7 5 3 9 9 H 1.09000 * 110.89174 * 328.88474 * 8 7 5 10 10 C 1.55158 * 111.00518 * 204.99978 * 8 7 5 11 11 C 1.54320 * 102.94581 * 206.42512 * 10 8 7 12 12 N 1.47026 * 107.27111 * 22.19115 * 11 10 8 13 13 C 1.36930 * 125.64907 * 181.02205 * 12 11 10 14 14 H 1.08005 * 120.00227 * 185.59878 * 13 12 11 15 15 C 1.38808 * 120.00500 * 5.59582 * 13 12 11 16 16 N 1.31618 * 120.00557 * 202.18474 * 15 13 12 17 17 Si 1.86803 * 119.99469 * 22.45630 * 15 13 12 18 18 H 1.48501 * 109.47009 * 174.03660 * 17 15 13 19 19 H 1.48498 * 109.47467 * 294.03645 * 17 15 13 20 20 H 1.48503 * 109.47369 * 54.03764 * 17 15 13 21 21 C 1.47428 * 108.70205 * 1.29339 * 12 11 10 22 22 C 1.52994 * 109.47206 * 255.63599 * 3 2 1 23 23 C 1.53002 * 109.47386 * 66.51160 * 22 3 2 24 24 C 1.53000 * 109.47099 * 180.02562 * 23 22 3 25 25 C 1.53001 * 109.47433 * 59.99923 * 24 23 22 26 26 C 1.53002 * 109.47040 * 300.00113 * 25 24 23 27 27 C 1.53000 * 109.47099 * 59.99682 * 26 25 24 28 28 H 1.08999 * 109.47670 * 179.43658 * 1 2 3 29 29 H 1.09006 * 109.47154 * 299.44039 * 1 2 3 30 30 H 1.09001 * 109.46978 * 59.44159 * 1 2 3 31 31 H 0.97002 * 119.99657 * 4.55177 * 7 5 3 32 32 H 1.08997 * 110.71817 * 88.05892 * 10 8 7 33 33 H 1.09003 * 110.87251 * 324.86230 * 10 8 7 34 34 H 1.09001 * 109.88425 * 262.77649 * 11 10 8 35 35 H 1.08994 * 109.88585 * 141.61304 * 11 10 8 36 36 H 0.96997 * 119.99409 * 5.40140 * 16 15 13 37 37 H 1.08991 * 110.37154 * 94.47776 * 21 12 11 38 38 H 1.09003 * 110.36457 * 216.80396 * 21 12 11 39 39 H 1.09008 * 109.47153 * 186.51156 * 22 3 2 40 40 H 1.08996 * 109.47176 * 299.99731 * 23 22 3 41 41 H 1.09000 * 109.47198 * 60.00343 * 23 22 3 42 42 H 1.09001 * 109.47126 * 300.00283 * 24 23 22 43 43 H 1.09004 * 109.47316 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.47434 * 179.97438 * 25 24 23 45 45 H 1.09008 * 109.46913 * 59.99751 * 25 24 23 46 46 H 1.08996 * 109.47176 * 299.99978 * 26 25 24 47 47 H 1.09000 * 109.47198 * 179.97438 * 26 25 24 48 48 H 1.09004 * 109.47316 * 179.97438 * 27 26 25 49 49 H 1.09008 * 109.47274 * 60.00104 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2539 2.0399 0.2769 5 6 3.1424 1.3512 0.9935 6 8 3.4534 0.3510 1.6051 7 7 3.8096 2.5034 1.2024 8 6 4.9728 2.5253 2.0926 9 1 4.8685 1.7860 2.8867 10 6 5.1974 3.9439 2.6796 11 6 6.7124 3.9611 2.9725 12 7 7.3335 2.9368 2.1199 13 6 8.6656 2.6212 2.0932 14 1 9.0388 1.9150 1.3662 15 6 9.5366 3.2089 3.0003 16 7 10.8236 3.2707 2.7317 17 14 8.8829 3.9054 4.6056 18 1 10.0200 4.3421 5.4551 19 1 8.0039 5.0676 4.3196 20 1 8.1053 2.8602 5.3185 21 6 6.2853 2.3103 1.2939 22 6 2.5446 1.6258 -1.3973 23 6 1.3749 1.7394 -2.3771 24 6 1.9094 2.0591 -3.7746 25 6 2.8490 0.9405 -4.2296 26 6 4.0187 0.8269 -3.2498 27 6 3.4842 0.5072 -1.8523 28 1 -0.3634 -1.0276 -0.0101 29 1 -0.3634 0.5051 0.8950 30 1 -0.3633 0.5225 -0.8849 31 1 3.5195 3.3183 0.7633 32 1 4.6255 4.0762 3.5980 33 1 4.9368 4.7115 1.9508 34 1 6.8898 3.7269 4.0222 35 1 7.1250 4.9414 2.7345 36 1 11.1533 2.9773 1.8680 37 1 6.2251 2.7997 0.3219 38 1 6.4844 1.2455 1.1718 39 1 3.0891 2.5697 -1.3706 40 1 0.8305 0.7955 -2.4039 41 1 0.7054 2.5360 -2.0528 42 1 2.4542 3.0028 -3.7481 43 1 1.0761 2.1405 -4.4725 44 1 3.2294 1.1681 -5.2253 45 1 2.3042 -0.0033 -4.2560 46 1 4.5634 1.7707 -3.2233 47 1 4.6878 0.0298 -3.5737 48 1 4.3175 0.4258 -1.1544 49 1 2.9394 -0.4366 -1.8788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752414166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:06 Heat of formation + Delta-G solvation = -65.856556 kcal Electronic energy + Delta-G solvation = -27367.686126 eV Core-core repulsion = 23716.087924 eV Total energy + Delta-G solvation = -3651.598202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51365 -38.78086 -37.58861 -36.98285 -34.19909 -32.49619 -31.78215 -30.96901 -29.48495 -28.36112 -27.50080 -25.81188 -23.83766 -22.83776 -22.16928 -21.09592 -20.48235 -20.13672 -19.85993 -17.69483 -17.15808 -16.84292 -16.34855 -15.87881 -15.39411 -15.09586 -14.80629 -14.47879 -14.26418 -14.17907 -13.77982 -13.52813 -13.32127 -13.30016 -12.97344 -12.56497 -12.49213 -12.36617 -12.13195 -12.05216 -11.75897 -11.43159 -11.32224 -11.21003 -11.10238 -11.06910 -10.74997 -10.65374 -10.50475 -10.35561 -10.05454 -10.02638 -9.49698 -9.32655 -9.01278 -8.83343 -8.54075 -7.06767 -6.30737 -3.17001 2.62840 2.91861 3.42609 3.54751 3.73727 3.79111 4.33715 4.36289 4.49831 4.65867 4.71031 4.72127 4.94579 4.97027 5.00994 5.05971 5.10722 5.15821 5.18162 5.28179 5.33125 5.35584 5.36389 5.39418 5.40943 5.44117 5.50215 5.64363 5.79910 5.88102 5.88610 5.90703 5.95722 5.98716 6.08514 6.08728 6.20231 6.34635 6.40582 6.46987 6.51994 6.73180 6.73812 6.87153 7.58805 7.67461 8.31320 8.35929 9.05649 9.58138 10.23588 11.19322 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019222 B = 0.003542 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.315692 B = 7903.957000 C = 8688.489600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.077 3.923 4 H 0.085 0.915 5 C 0.508 3.492 6 O -0.517 6.517 7 N -0.717 5.717 8 C 0.126 3.874 9 H 0.101 0.899 10 C -0.135 4.135 11 C 0.120 3.880 12 N -0.610 5.610 13 C -0.325 4.325 14 H 0.080 0.920 15 C -0.018 4.018 16 N -0.922 5.922 17 Si 1.057 2.943 18 H -0.300 1.300 19 H -0.283 1.283 20 H -0.297 1.297 21 C 0.131 3.869 22 C -0.096 4.096 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.109 4.109 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.397 0.603 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.027 0.973 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.832 -0.055 -11.529 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.268 6.268 3 C 0.015 3.985 4 H 0.103 0.897 5 C 0.293 3.707 6 O -0.391 6.391 7 N -0.370 5.370 8 C 0.020 3.980 9 H 0.119 0.881 10 C -0.173 4.173 11 C -0.006 4.006 12 N -0.338 5.338 13 C -0.452 4.452 14 H 0.097 0.903 15 C -0.218 4.218 16 N -0.563 5.563 17 Si 0.890 3.110 18 H -0.229 1.229 19 H -0.211 1.211 20 H -0.225 1.225 21 C 0.003 3.997 22 C -0.115 4.115 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.147 4.147 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.231 0.769 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.917 -0.327 -9.669 25.800 hybrid contribution -0.842 -0.124 -1.600 1.812 sum -24.759 -0.451 -11.269 27.206 Atomic orbital electron populations 1.22978 0.81105 1.03155 0.99938 1.88051 1.19221 1.24900 1.94620 1.22058 0.94812 0.87114 0.94497 0.89699 1.20535 0.83518 0.83644 0.83002 1.90739 1.66482 1.33995 1.47899 1.45905 1.31167 1.10792 1.49114 1.22401 0.84567 0.98139 0.92861 0.88133 1.22865 0.97744 0.95818 1.00905 1.21905 0.90214 0.93928 0.94517 1.44773 1.03990 1.40034 1.44975 1.20138 0.80402 1.26690 1.17960 0.90259 1.25754 0.94121 0.98890 1.03068 1.70899 1.13569 1.46477 1.25334 0.84071 0.73542 0.76385 0.76982 1.22858 1.21074 1.22528 1.21919 0.86887 0.97290 0.93569 1.21588 0.97328 1.00184 0.92422 1.21649 0.96949 1.01778 0.94866 1.21509 0.99003 0.98927 0.96058 1.21538 0.96771 0.98809 0.98557 1.21541 0.97418 1.01879 0.94918 1.21452 0.98611 0.98319 0.96295 0.89324 0.94030 0.93656 0.76934 0.90872 0.90934 0.95362 0.93476 0.92780 0.95489 0.93423 0.89846 0.91279 0.92139 0.91885 0.92089 0.92214 0.92077 0.91953 0.91892 0.91711 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.39 101.05 1.05 1.25 16 2 O -0.35 -4.22 8.67 -55.13 -0.48 -4.70 16 3 C 0.08 0.82 2.34 -27.89 -0.07 0.75 16 4 H 0.09 0.67 7.66 -51.93 -0.40 0.27 16 5 C 0.51 7.37 6.26 -10.99 -0.07 7.31 16 6 O -0.52 -10.08 16.12 -14.34 -0.23 -10.31 16 7 N -0.72 -9.40 5.01 -51.61 -0.26 -9.66 16 8 C 0.13 2.13 3.47 -65.66 -0.23 1.91 16 9 H 0.10 1.93 7.48 -51.93 -0.39 1.55 16 10 C -0.13 -2.14 6.59 -24.90 -0.16 -2.30 16 11 C 0.12 2.58 4.59 -3.06 -0.01 2.56 16 12 N -0.61 -15.22 3.34 -169.93 -0.57 -15.78 16 13 C -0.33 -9.53 10.50 -15.06 -0.16 -9.69 16 14 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 15 C -0.02 -0.55 5.47 -17.43 -0.10 -0.65 16 16 N -0.92 -29.32 13.70 55.49 0.76 -28.56 16 17 Si 1.06 26.84 24.69 -169.99 -4.20 22.64 16 18 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 19 H -0.28 -6.45 5.29 56.52 0.30 -6.15 16 20 H -0.30 -7.39 7.06 56.52 0.40 -6.99 16 21 C 0.13 2.72 6.93 -2.40 -0.02 2.71 16 22 C -0.10 -0.89 1.99 -90.62 -0.18 -1.07 16 23 C -0.12 -0.84 4.47 -26.73 -0.12 -0.96 16 24 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 25 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 26 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 27 C -0.11 -1.24 4.82 -26.73 -0.13 -1.37 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.27 6.26 -51.93 -0.33 -0.05 16 31 H 0.40 3.83 8.24 -40.82 -0.34 3.49 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 34 H 0.03 0.65 4.00 -51.93 -0.21 0.45 16 35 H 0.05 1.05 6.98 -51.93 -0.36 0.69 16 36 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.08 0.73 7.66 -51.92 -0.40 0.33 16 40 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.92 7.43 -51.93 -0.39 0.53 16 49 H 0.07 0.89 7.52 -51.92 -0.39 0.50 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -35.31 368.77 -8.77 -44.08 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -8.70 Total: -0.24 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.66 Total: -3.02 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.07 Total: -54.01 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.71 Total: -15.01 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.20 Total: 22.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.31 -8.77 -44.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752414166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.774 kcal (2) G-P(sol) polarization free energy of solvation -35.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds