Wall clock time and date at job start Fri Apr 10 2020 22:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00227 * 2 1 4 4 H 1.09002 * 109.46765 * 15.63347 * 3 2 1 5 5 C 1.50697 * 109.47129 * 135.63014 * 3 2 1 6 6 O 1.21284 * 120.00156 * 2.50866 * 5 3 2 7 7 N 1.34778 * 120.00314 * 182.49807 * 5 3 2 8 8 C 1.46494 * 120.00214 * 184.55227 * 7 5 3 9 9 H 1.09000 * 110.89174 * 328.88474 * 8 7 5 10 10 C 1.55158 * 111.00518 * 204.99978 * 8 7 5 11 11 C 1.54320 * 102.94581 * 206.42512 * 10 8 7 12 12 N 1.47026 * 107.27111 * 22.19115 * 11 10 8 13 13 C 1.36930 * 125.64907 * 181.02205 * 12 11 10 14 14 H 1.08005 * 120.00227 * 185.59878 * 13 12 11 15 15 C 1.38808 * 120.00500 * 5.59582 * 13 12 11 16 16 N 1.31618 * 120.00557 * 202.18474 * 15 13 12 17 17 Si 1.86803 * 119.99469 * 22.45630 * 15 13 12 18 18 H 1.48501 * 109.47009 * 174.03660 * 17 15 13 19 19 H 1.48498 * 109.47467 * 294.03645 * 17 15 13 20 20 H 1.48503 * 109.47369 * 54.03764 * 17 15 13 21 21 C 1.47428 * 108.70205 * 1.29339 * 12 11 10 22 22 C 1.52994 * 109.47206 * 255.63599 * 3 2 1 23 23 C 1.53002 * 109.47386 * 66.51160 * 22 3 2 24 24 C 1.53000 * 109.47099 * 180.02562 * 23 22 3 25 25 C 1.53001 * 109.47433 * 59.99923 * 24 23 22 26 26 C 1.53002 * 109.47040 * 300.00113 * 25 24 23 27 27 C 1.53000 * 109.47099 * 59.99682 * 26 25 24 28 28 H 1.08999 * 109.47670 * 179.43658 * 1 2 3 29 29 H 1.09006 * 109.47154 * 299.44039 * 1 2 3 30 30 H 1.09001 * 109.46978 * 59.44159 * 1 2 3 31 31 H 0.97002 * 119.99657 * 4.55177 * 7 5 3 32 32 H 1.08997 * 110.71817 * 88.05892 * 10 8 7 33 33 H 1.09003 * 110.87251 * 324.86230 * 10 8 7 34 34 H 1.09001 * 109.88425 * 262.77649 * 11 10 8 35 35 H 1.08994 * 109.88585 * 141.61304 * 11 10 8 36 36 H 0.96997 * 119.99409 * 5.40140 * 16 15 13 37 37 H 1.08991 * 110.37154 * 94.47776 * 21 12 11 38 38 H 1.09003 * 110.36457 * 216.80396 * 21 12 11 39 39 H 1.09008 * 109.47153 * 186.51156 * 22 3 2 40 40 H 1.08996 * 109.47176 * 299.99731 * 23 22 3 41 41 H 1.09000 * 109.47198 * 60.00343 * 23 22 3 42 42 H 1.09001 * 109.47126 * 300.00283 * 24 23 22 43 43 H 1.09004 * 109.47316 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.47434 * 179.97438 * 25 24 23 45 45 H 1.09008 * 109.46913 * 59.99751 * 25 24 23 46 46 H 1.08996 * 109.47176 * 299.99978 * 26 25 24 47 47 H 1.09000 * 109.47198 * 179.97438 * 26 25 24 48 48 H 1.09004 * 109.47316 * 179.97438 * 27 26 25 49 49 H 1.09008 * 109.47274 * 60.00104 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2539 2.0399 0.2769 5 6 3.1424 1.3512 0.9935 6 8 3.4534 0.3510 1.6051 7 7 3.8096 2.5034 1.2024 8 6 4.9728 2.5253 2.0926 9 1 4.8685 1.7860 2.8867 10 6 5.1974 3.9439 2.6796 11 6 6.7124 3.9611 2.9725 12 7 7.3335 2.9368 2.1199 13 6 8.6656 2.6212 2.0932 14 1 9.0388 1.9150 1.3662 15 6 9.5366 3.2089 3.0003 16 7 10.8236 3.2707 2.7317 17 14 8.8829 3.9054 4.6056 18 1 10.0200 4.3421 5.4551 19 1 8.0039 5.0676 4.3196 20 1 8.1053 2.8602 5.3185 21 6 6.2853 2.3103 1.2939 22 6 2.5446 1.6258 -1.3973 23 6 1.3749 1.7394 -2.3771 24 6 1.9094 2.0591 -3.7746 25 6 2.8490 0.9405 -4.2296 26 6 4.0187 0.8269 -3.2498 27 6 3.4842 0.5072 -1.8523 28 1 -0.3634 -1.0276 -0.0101 29 1 -0.3634 0.5051 0.8950 30 1 -0.3633 0.5225 -0.8849 31 1 3.5195 3.3183 0.7633 32 1 4.6255 4.0762 3.5980 33 1 4.9368 4.7115 1.9508 34 1 6.8898 3.7269 4.0222 35 1 7.1250 4.9414 2.7345 36 1 11.1533 2.9773 1.8680 37 1 6.2251 2.7997 0.3219 38 1 6.4844 1.2455 1.1718 39 1 3.0891 2.5697 -1.3706 40 1 0.8305 0.7955 -2.4039 41 1 0.7054 2.5360 -2.0528 42 1 2.4542 3.0028 -3.7481 43 1 1.0761 2.1405 -4.4725 44 1 3.2294 1.1681 -5.2253 45 1 2.3042 -0.0033 -4.2560 46 1 4.5634 1.7707 -3.2233 47 1 4.6878 0.0298 -3.5737 48 1 4.3175 0.4258 -1.1544 49 1 2.9394 -0.4366 -1.8788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752414166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:05 Heat of formation + Delta-G solvation = -90.975935 kcal Electronic energy + Delta-G solvation = -27368.775384 eV Core-core repulsion = 23716.087924 eV Total energy + Delta-G solvation = -3652.687460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53447 -39.93108 -38.90550 -37.87797 -35.74797 -34.25271 -32.87370 -31.67224 -31.17790 -29.76599 -28.42908 -26.75498 -25.62105 -23.60082 -23.03138 -22.74214 -21.91390 -21.33749 -20.64694 -19.66837 -18.36031 -17.89114 -17.26130 -17.12165 -17.00027 -15.92906 -15.83373 -15.67734 -15.36028 -15.22748 -15.15907 -14.91095 -14.67742 -14.33277 -14.15608 -13.92307 -13.90652 -13.24011 -13.11984 -13.10030 -13.06845 -12.80022 -12.59312 -12.48817 -12.35844 -12.03019 -11.88489 -11.72726 -11.57416 -11.46144 -11.27060 -11.19200 -11.05632 -10.84811 -10.60238 -10.28368 -10.16132 -9.17460 -8.70387 -5.47829 1.39677 1.50784 1.52291 1.73351 1.88039 2.54870 2.95199 3.04812 3.33967 3.50441 3.60015 3.67683 3.78427 3.83480 3.91969 4.05150 4.06873 4.29051 4.30673 4.36351 4.38707 4.45730 4.52970 4.57578 4.59473 4.64054 4.65962 4.70911 4.75389 4.81739 4.87378 4.87675 4.99644 5.00537 5.14333 5.16266 5.23288 5.28502 5.30160 5.37818 5.40818 5.41468 5.52911 5.59330 6.05745 6.10361 6.56546 6.78702 7.23453 7.40005 8.04473 8.81537 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019222 B = 0.003542 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.315692 B = 7903.957000 C = 8688.489600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.385 6.385 3 C 0.084 3.916 4 H 0.126 0.874 5 C 0.504 3.496 6 O -0.576 6.576 7 N -0.698 5.698 8 C 0.141 3.859 9 H 0.076 0.924 10 C -0.114 4.114 11 C 0.104 3.896 12 N -0.631 5.631 13 C -0.323 4.323 14 H 0.040 0.960 15 C -0.074 4.074 16 N -0.956 5.956 17 Si 1.099 2.901 18 H -0.310 1.310 19 H -0.233 1.233 20 H -0.291 1.291 21 C 0.129 3.871 22 C -0.091 4.091 23 C -0.109 4.109 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.107 4.107 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.420 0.580 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.024 0.976 35 H 0.047 0.953 36 H 0.248 0.752 37 H 0.040 0.960 38 H 0.012 0.988 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.023 0.977 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.303 2.808 -11.824 31.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.302 6.302 3 C 0.023 3.977 4 H 0.144 0.856 5 C 0.291 3.709 6 O -0.454 6.454 7 N -0.352 5.352 8 C 0.035 3.965 9 H 0.094 0.906 10 C -0.152 4.152 11 C -0.020 4.020 12 N -0.359 5.359 13 C -0.451 4.451 14 H 0.058 0.942 15 C -0.267 4.267 16 N -0.599 5.599 17 Si 0.926 3.074 18 H -0.239 1.239 19 H -0.157 1.157 20 H -0.219 1.219 21 C 0.002 3.998 22 C -0.110 4.110 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.144 4.144 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.258 0.742 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.042 0.958 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.467 2.576 -10.021 30.289 hybrid contribution 0.581 -1.179 -1.632 2.095 sum -27.887 1.397 -11.653 30.256 Atomic orbital electron populations 1.23196 0.79012 1.04054 1.01507 1.88029 1.21623 1.25889 1.94701 1.22119 0.94090 0.87873 0.93609 0.85631 1.21439 0.84014 0.82760 0.82683 1.90717 1.68348 1.36064 1.50228 1.45640 1.29514 1.11727 1.48342 1.21894 0.83819 0.98830 0.92003 0.90567 1.22841 0.93644 0.95247 1.03509 1.22153 0.93980 0.92433 0.93430 1.44809 1.03192 1.41659 1.46273 1.19997 0.83173 1.25306 1.16649 0.94235 1.27142 0.93727 0.99705 1.06159 1.71006 1.15007 1.49067 1.24853 0.83595 0.73606 0.77807 0.72429 1.23935 1.15736 1.21888 1.22008 0.88368 0.95047 0.94338 1.21607 0.97850 0.99312 0.92257 1.21638 0.96115 1.02775 0.94130 1.21519 0.99214 0.98280 0.96302 1.21527 0.96144 0.99565 0.98218 1.21532 0.98235 1.01240 0.94720 1.21376 0.97688 0.99103 0.96261 0.89041 0.93139 0.91197 0.74216 0.87450 0.87164 0.95897 0.93519 0.94360 0.94228 0.96952 0.88723 0.91480 0.89312 0.91495 0.90361 0.91483 0.92210 0.92178 0.93108 0.95783 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.39 113.37 1.18 1.41 16 2 O -0.38 -8.69 8.67 -129.96 -1.13 -9.82 16 3 C 0.08 1.57 2.34 29.85 0.07 1.64 16 4 H 0.13 1.33 7.66 -2.39 -0.02 1.32 16 5 C 0.50 14.04 6.26 87.66 0.55 14.58 16 6 O -0.58 -22.96 16.12 15.98 0.26 -22.71 16 7 N -0.70 -16.50 5.01 -435.59 -2.18 -18.68 16 8 C 0.14 4.57 3.47 46.47 0.16 4.73 16 9 H 0.08 2.90 7.48 -2.39 -0.02 2.89 16 10 C -0.11 -3.11 6.59 31.78 0.21 -2.90 16 11 C 0.10 4.21 4.59 86.73 0.40 4.61 16 12 N -0.63 -31.71 3.34 -691.54 -2.31 -34.02 16 13 C -0.32 -19.72 10.50 84.03 0.88 -18.84 16 14 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 15 C -0.07 -4.55 5.47 84.86 0.46 -4.08 16 16 N -0.96 -63.19 13.70 21.65 0.30 -62.89 16 17 Si 1.10 53.94 24.69 68.60 1.69 55.64 16 18 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 19 H -0.23 -9.57 5.29 99.48 0.53 -9.04 16 20 H -0.29 -13.88 7.06 99.48 0.70 -13.18 16 21 C 0.13 5.46 6.93 86.93 0.60 6.06 16 22 C -0.09 -1.47 1.99 -10.79 -0.02 -1.49 16 23 C -0.11 -1.14 4.47 30.59 0.14 -1.01 16 24 C -0.12 -1.22 5.92 30.59 0.18 -1.04 16 25 C -0.12 -1.68 5.92 30.60 0.18 -1.50 16 26 C -0.12 -2.36 5.92 30.59 0.18 -2.18 16 27 C -0.11 -2.46 4.82 30.59 0.15 -2.31 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.56 6.26 -2.39 -0.01 0.54 16 31 H 0.42 6.16 8.24 -92.71 -0.76 5.39 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.30 16 33 H 0.11 2.23 8.01 -2.39 -0.02 2.21 16 34 H 0.02 0.99 4.00 -2.39 -0.01 0.98 16 35 H 0.05 1.91 6.98 -2.39 -0.02 1.89 16 36 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 39 H 0.09 1.32 7.66 -2.38 -0.02 1.30 16 40 H 0.07 0.77 6.44 -2.39 -0.02 0.75 16 41 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.02 0.72 7.43 -2.39 -0.02 0.71 16 49 H 0.06 1.51 7.52 -2.38 -0.02 1.49 16 Total: -1.00 -84.33 368.77 1.89 -82.44 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -0.06 Total: 12.35 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 5.32 Total: -2.31 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -4.20 Total: -115.59 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.87 Total: -32.53 kcal Atomic # 14 Polarization: 53.94 SS G_CDS: 1.69 Total: 55.64 kcal Total: -84.33 1.89 -82.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752414166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.538 kcal (2) G-P(sol) polarization free energy of solvation -84.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds