Wall clock time and date at job start Fri Apr 10 2020 22:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 C 1.52997 * 109.47069 * 239.99278 * 2 1 3 5 5 C 1.53009 * 109.47021 * 119.99524 * 2 1 3 6 6 C 1.53003 * 109.46803 * 60.00190 * 5 2 1 7 7 C 1.53000 * 109.46986 * 180.02562 * 6 5 2 8 8 C 1.53001 * 109.47355 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47168 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00363 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99988 * 179.97438 * 9 8 7 12 12 C 1.46493 * 119.99864 * 179.72721 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.46949 * 294.99717 * 13 12 11 15 15 N 1.46499 * 109.47392 * 54.99694 * 13 12 11 16 16 C 1.36941 * 120.00177 * 205.00605 * 15 13 12 17 17 H 1.08001 * 119.99593 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99910 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00315 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99791 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47013 * 89.99614 * 20 18 16 22 22 H 1.48502 * 109.46771 * 209.99705 * 20 18 16 23 23 H 1.48496 * 109.46881 * 329.99821 * 20 18 16 24 24 C 1.52997 * 109.47519 * 175.00001 * 13 12 11 25 25 C 1.53003 * 117.50025 * 248.74690 * 24 13 12 26 26 C 1.52997 * 117.50117 * 180.08541 * 24 13 12 27 27 H 1.09003 * 109.46949 * 299.99857 * 1 2 3 28 28 H 1.08998 * 109.47223 * 60.00092 * 1 2 3 29 29 H 1.09005 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47296 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46952 * 300.00074 * 3 2 1 32 32 H 1.09000 * 109.47551 * 59.99641 * 3 2 1 33 33 H 1.08995 * 109.47490 * 300.00160 * 4 2 1 34 34 H 1.08998 * 109.46583 * 60.00238 * 4 2 1 35 35 H 1.09002 * 109.47253 * 179.97438 * 4 2 1 36 36 H 1.08998 * 109.47373 * 300.00358 * 5 2 1 37 37 H 1.09002 * 109.46901 * 179.97438 * 5 2 1 38 38 H 1.09000 * 109.47521 * 60.00034 * 6 5 2 39 39 H 1.09002 * 109.47113 * 299.99529 * 6 5 2 40 40 H 1.09000 * 109.46966 * 59.99691 * 7 6 5 41 41 H 1.09002 * 109.46807 * 299.99713 * 7 6 5 42 42 H 1.08998 * 109.46837 * 59.99832 * 8 7 6 43 43 H 1.09002 * 109.46926 * 299.99636 * 8 7 6 44 44 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 45 45 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 46 46 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 47 47 H 0.97000 * 119.99498 * 24.99864 * 15 13 12 48 48 H 0.96997 * 120.00360 * 179.97438 * 19 18 16 49 49 H 1.09006 * 115.54757 * 34.41089 * 24 13 12 50 50 H 1.09001 * 117.49296 * 359.97438 * 25 24 13 51 51 H 1.08991 * 117.50309 * 145.01577 * 25 24 13 52 52 H 1.08999 * 117.49717 * 214.97918 * 26 24 13 53 53 H 1.08993 * 117.49842 * 359.97328 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2494 6 6 1.5300 -2.1637 1.2494 7 6 2.0394 -2.8847 2.4990 8 6 1.5300 -4.3274 2.4988 9 6 2.0323 -5.0377 3.7293 10 8 2.7295 -4.4483 4.5276 11 7 1.7067 -6.3281 3.9426 12 6 2.1999 -7.0203 5.1358 13 6 1.6894 -8.4626 5.1362 14 1 0.6034 -8.4636 5.2306 15 7 2.0712 -9.1163 3.8820 16 6 1.3410 -10.1750 3.4116 17 1 0.4839 -10.5283 3.9656 18 6 1.7031 -10.7946 2.2235 19 7 2.7480 -10.3643 1.5487 20 14 0.7074 -12.2393 1.5823 21 1 -0.3789 -11.7397 0.7017 22 1 1.5933 -13.1468 0.8096 23 1 0.1166 -12.9796 2.7260 24 6 2.3042 -9.2210 6.3143 25 6 3.3176 -10.3217 5.9943 26 6 1.9165 -10.6908 6.4880 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6766 -0.2076 -2.1391 35 1 3.1300 -0.7210 -1.2494 36 1 1.6766 -0.2074 2.1393 37 1 3.1300 -0.7216 1.2491 38 1 1.8933 -2.6776 0.3595 39 1 0.4400 -2.1637 1.2494 40 1 1.6757 -2.3707 3.3887 41 1 3.1294 -2.8847 2.4994 42 1 1.8941 -4.8411 1.6091 43 1 0.4399 -4.3278 2.4981 44 1 1.1493 -6.7996 3.3039 45 1 3.2899 -7.0212 5.1308 46 1 1.8410 -6.5072 6.0281 47 1 2.8412 -8.7990 3.3846 48 1 3.0013 -10.7975 0.7186 49 1 2.4678 -8.6334 7.2177 50 1 3.5460 -10.5057 4.9445 51 1 4.1476 -10.4585 6.6873 52 1 1.8253 -11.0703 7.5057 53 1 1.2231 -11.1174 5.7633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752457869.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:10 Heat of formation + Delta-G solvation = -42.722954 kcal Electronic energy + Delta-G solvation = -25866.744762 eV Core-core repulsion = 22351.982803 eV Total energy + Delta-G solvation = -3514.761959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.43106 -38.37393 -37.60101 -34.57668 -34.11702 -33.24014 -30.96746 -29.69522 -27.98343 -27.51622 -27.49218 -24.86965 -23.55350 -22.50244 -21.53484 -21.09557 -19.97160 -19.04067 -18.72279 -17.35889 -16.52360 -15.96410 -15.61982 -15.17744 -14.97334 -14.84805 -14.58734 -14.35718 -14.22261 -13.73285 -13.66197 -13.07065 -13.00919 -12.78303 -12.69713 -12.37537 -12.14851 -11.93174 -11.87893 -11.72233 -11.39545 -11.37137 -11.22518 -11.16642 -10.90968 -10.85703 -10.82730 -10.58310 -10.52893 -10.48426 -10.40446 -10.13980 -9.71589 -9.58312 -9.38612 -9.15251 -8.99739 -8.56229 -7.08776 -5.85865 -3.15939 3.03699 3.36646 3.43393 3.44547 3.64312 4.48119 4.48972 4.60319 4.60536 4.63163 4.97748 5.00605 5.03876 5.29868 5.30951 5.37174 5.38748 5.44774 5.46187 5.49857 5.55989 5.57934 5.60044 5.68152 5.72628 5.73929 5.75983 5.79842 5.82979 5.85380 5.87249 5.99085 6.00772 6.06346 6.09214 6.12394 6.12875 6.22043 6.34312 6.38111 6.41326 6.48051 6.65319 6.76421 6.94047 7.02108 7.27064 7.63454 8.01006 8.31368 8.65613 9.43688 9.97712 10.34070 11.35599 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.002507 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.380522 B =11168.041625 C =12567.420130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.101 4.101 8 C -0.141 4.141 9 C 0.509 3.491 10 O -0.558 6.558 11 N -0.714 5.714 12 C 0.119 3.881 13 C 0.192 3.808 14 H 0.056 0.944 15 N -0.717 5.717 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.008 4.008 19 N -0.928 5.928 20 Si 0.903 3.097 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.178 4.178 25 C -0.163 4.163 26 C -0.176 4.176 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.410 0.590 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.386 0.614 48 H 0.256 0.744 49 H 0.085 0.915 50 H 0.118 0.882 51 H 0.069 0.931 52 H 0.071 0.929 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 17.491 -0.733 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.146 4.146 6 C -0.161 4.161 7 C -0.139 4.139 8 C -0.181 4.181 9 C 0.295 3.705 10 O -0.438 6.438 11 N -0.366 5.366 12 C -0.005 4.005 13 C 0.081 3.919 14 H 0.074 0.926 15 N -0.359 5.359 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.205 4.205 19 N -0.576 5.576 20 Si 0.734 3.266 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.199 4.199 25 C -0.200 4.200 26 C -0.213 4.213 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.246 0.754 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.221 0.779 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.136 0.864 51 H 0.087 0.913 52 H 0.090 0.910 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.175 17.754 -0.214 18.037 hybrid contribution -0.460 -1.161 -0.767 1.466 sum -3.635 16.593 -0.982 17.015 Atomic orbital electron populations 1.21936 0.94743 1.02048 1.01370 1.20566 0.95649 0.95256 0.95692 1.21872 1.00935 0.95591 1.01474 1.21939 1.00981 1.00599 0.96652 1.21634 1.00644 0.95373 0.96904 1.21756 1.00882 0.95291 0.98215 1.21316 1.01475 0.93178 0.97954 1.21673 1.02347 0.97014 0.97096 1.20678 0.80287 0.82003 0.87536 1.90651 1.38820 1.66615 1.47678 1.46034 1.53086 1.11503 1.25968 1.21543 0.99295 0.92694 0.87014 1.19995 0.96966 0.88298 0.86651 0.92573 1.42471 1.34869 1.36961 1.21577 1.19162 1.07708 1.06774 1.03351 0.91091 1.24709 0.98165 0.99720 0.97893 1.69654 1.27427 1.43295 1.17233 0.86267 0.79160 0.82492 0.78711 1.21784 1.21866 1.20792 1.23075 1.05418 0.91310 1.00140 1.22911 0.91189 1.02549 1.03353 1.22853 1.00262 0.97697 1.00494 0.92817 0.93045 0.92139 0.92745 0.92899 0.92801 0.92081 0.93051 0.92726 0.92035 0.91952 0.91578 0.91749 0.91564 0.91412 0.88828 0.89289 0.75395 0.91874 0.92042 0.77936 0.93454 0.89655 0.86355 0.91294 0.91035 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.12 37.16 0.30 -0.78 16 2 C -0.07 -0.56 0.80 -154.51 -0.12 -0.68 16 3 C -0.14 -1.02 8.47 37.15 0.31 -0.71 16 4 C -0.14 -1.13 8.12 37.16 0.30 -0.83 16 5 C -0.11 -0.94 4.27 -26.73 -0.11 -1.06 16 6 C -0.12 -1.15 4.51 -26.73 -0.12 -1.27 16 7 C -0.10 -1.17 4.50 -26.73 -0.12 -1.30 16 8 C -0.14 -1.75 5.70 -27.89 -0.16 -1.90 16 9 C 0.51 8.26 7.83 -10.98 -0.09 8.18 16 10 O -0.56 -10.84 15.98 5.56 0.09 -10.75 16 11 N -0.71 -11.72 5.39 -60.29 -0.32 -12.04 16 12 C 0.12 2.04 5.22 -4.04 -0.02 2.02 16 13 C 0.19 3.52 2.86 -67.93 -0.19 3.33 16 14 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 15 N -0.72 -15.81 3.07 -53.43 -0.16 -15.98 16 16 C -0.24 -5.90 8.16 -15.06 -0.12 -6.02 16 17 H 0.07 1.74 6.91 -52.49 -0.36 1.37 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -26.06 13.06 55.49 0.72 -25.33 16 20 Si 0.90 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.18 -3.12 5.70 -90.62 -0.52 -3.63 16 25 C -0.16 -3.06 9.74 -26.69 -0.26 -3.32 16 26 C -0.18 -3.16 9.87 -26.69 -0.26 -3.42 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 39 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 40 H 0.07 0.82 8.10 -51.93 -0.42 0.39 16 41 H 0.07 0.88 8.10 -51.93 -0.42 0.45 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.41 6.72 8.13 -40.82 -0.33 6.39 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.39 9.40 7.80 -40.82 -0.32 9.08 16 48 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 50 H 0.12 2.66 6.68 -51.93 -0.35 2.31 16 51 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 52 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 53 H 0.10 2.05 6.22 -51.93 -0.32 1.73 16 LS Contribution 412.04 15.07 6.21 6.21 Total: -1.00 -27.92 412.04 -9.95 -37.87 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -10.18 Total: 15.59 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.28 Total: -11.72 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.24 Total: -53.36 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -27.92 -9.95 -37.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752457869.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.854 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds