Wall clock time and date at job start Fri Apr 10 2020 22:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 C 1.53001 * 109.47073 * 174.81782 * 3 2 1 5 5 C 1.53003 * 109.46765 * 187.00355 * 4 3 2 6 6 C 1.52999 * 109.47098 * 54.81647 * 3 2 1 7 7 C 1.52999 * 109.47420 * 60.00150 * 6 3 2 8 8 C 1.50707 * 109.47026 * 294.81894 * 3 2 1 9 9 O 1.21279 * 119.99915 * 127.23293 * 8 3 2 10 10 N 1.34770 * 119.99608 * 307.23262 * 8 3 2 11 11 C 1.46929 * 120.63529 * 354.67818 * 10 8 3 12 12 C 1.53196 * 108.77428 * 233.62971 * 11 10 8 13 13 C 1.53033 * 109.34122 * 305.34572 * 12 11 10 14 14 C 1.53114 * 109.50405 * 61.34943 * 13 12 11 15 15 H 1.08995 * 109.51398 * 58.62593 * 14 13 12 16 16 C 1.53001 * 109.48785 * 178.70081 * 14 13 12 17 17 N 1.46498 * 109.47089 * 294.85209 * 16 14 13 18 18 C 1.36937 * 119.99926 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99971 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00068 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00165 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46954 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47540 * 119.99509 * 22 20 18 25 25 H 1.48499 * 109.47165 * 239.99962 * 22 20 18 26 26 C 1.46934 * 120.62993 * 174.69756 * 10 8 3 27 27 H 1.08998 * 109.47703 * 300.00196 * 1 2 3 28 28 H 1.09000 * 109.47153 * 60.00439 * 1 2 3 29 29 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46970 * 239.99816 * 2 1 3 31 31 H 1.08997 * 109.46875 * 120.00004 * 2 1 3 32 32 H 1.08993 * 109.46863 * 307.00171 * 4 3 2 33 33 H 1.09001 * 109.47027 * 67.00417 * 4 3 2 34 34 H 1.08995 * 109.46770 * 299.99639 * 5 4 3 35 35 H 1.08997 * 109.46900 * 59.99943 * 5 4 3 36 36 H 1.08995 * 109.46742 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.46921 * 180.02562 * 6 3 2 38 38 H 1.09002 * 109.47052 * 300.00281 * 6 3 2 39 39 H 1.09001 * 109.46664 * 300.00182 * 7 6 3 40 40 H 1.09003 * 109.46838 * 59.99256 * 7 6 3 41 41 H 1.08994 * 109.47351 * 180.02562 * 7 6 3 42 42 H 1.09000 * 109.58927 * 113.84597 * 11 10 8 43 43 H 1.08998 * 109.70149 * 353.48513 * 11 10 8 44 44 H 1.09006 * 109.49682 * 65.31824 * 12 11 10 45 45 H 1.09001 * 109.49683 * 185.37655 * 12 11 10 46 46 H 1.09003 * 109.46183 * 181.40231 * 13 12 11 47 47 H 1.09004 * 109.46134 * 301.36298 * 13 12 11 48 48 H 1.09001 * 109.47021 * 54.85286 * 16 14 13 49 49 H 1.09005 * 109.46637 * 174.85678 * 16 14 13 50 50 H 0.97002 * 120.00062 * 0.02562 * 17 16 14 51 51 H 0.97000 * 119.99964 * 180.02562 * 21 20 18 52 52 H 1.08992 * 109.58609 * 246.15429 * 26 10 8 53 53 H 1.08995 * 109.58304 * 6.44320 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4445 0.1303 5 6 4.0594 2.8816 0.3058 6 6 1.4263 2.2004 1.1790 7 6 1.8272 1.5178 2.4883 8 6 1.6451 2.1149 -1.2897 9 8 1.0542 3.1737 -1.2653 10 7 1.9487 1.5396 -2.4699 11 6 2.7643 0.3184 -2.5198 12 6 3.9487 0.5547 -3.4622 13 6 3.4279 1.0178 -4.8246 14 6 2.6697 2.3379 -4.6603 15 1 3.3333 3.0876 -4.2293 16 6 2.1770 2.8171 -6.0272 17 7 3.3272 3.1376 -6.8761 18 6 3.1304 3.5901 -8.1534 19 1 2.1273 3.7112 -8.5349 20 6 4.2203 3.8932 -8.9579 21 7 5.4428 3.7462 -8.4928 22 14 3.9519 4.5099 -10.7006 23 1 2.4954 4.5865 -10.9798 24 1 4.5560 5.8585 -10.8471 25 1 4.5909 3.5743 -11.6606 26 6 1.4708 2.1218 -3.7315 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8557 0.8515 0.9972 33 1 4.0065 1.0152 -0.7688 34 1 3.7680 3.4745 -0.5611 35 1 3.6172 3.3108 1.2049 36 1 5.1454 2.8830 0.3981 37 1 1.7893 3.2282 1.1787 38 1 0.3403 2.1989 1.0861 39 1 1.4638 0.4901 2.4882 40 1 2.9132 1.5192 2.5810 41 1 1.3896 2.0575 3.3281 42 1 2.1606 -0.5092 -2.8921 43 1 3.1330 0.0818 -1.5217 44 1 4.6006 1.3208 -3.0423 45 1 4.5083 -0.3729 -3.5828 46 1 4.2676 1.1626 -5.5044 47 1 2.7566 0.2622 -5.2328 48 1 1.5867 2.0303 -6.4969 49 1 1.5605 3.7070 -5.8996 50 1 4.2281 3.0292 -6.5333 51 1 6.2043 3.9584 -9.0549 52 1 0.7617 1.4412 -4.2025 53 1 0.9838 3.0763 -3.5320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752809406.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:13 Heat of formation + Delta-G solvation = -35.098870 kcal Electronic energy + Delta-G solvation = -28097.147165 eV Core-core repulsion = 24582.715811 eV Total energy + Delta-G solvation = -3514.431354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20768 -38.18133 -36.90771 -34.97496 -32.85673 -32.50021 -31.69535 -31.01413 -29.79497 -27.46595 -25.80424 -25.21129 -24.22776 -22.84000 -22.34692 -21.92405 -20.63785 -19.56804 -18.57313 -17.10868 -16.44912 -16.24068 -16.07816 -15.42182 -15.07542 -14.40492 -14.31803 -14.22704 -14.01208 -13.50722 -13.36123 -13.33573 -13.18529 -12.94090 -12.92321 -12.71554 -12.54475 -12.31001 -12.05531 -11.92435 -11.81292 -11.72862 -11.44036 -11.21774 -11.00876 -10.91521 -10.84267 -10.82095 -10.67214 -10.54113 -10.34751 -10.16774 -10.10502 -9.94975 -9.70518 -9.39648 -8.85818 -8.50135 -6.89077 -5.74768 -3.02817 2.69771 3.02731 3.44659 3.50455 3.52607 4.25208 4.33533 4.58074 4.61302 4.72095 4.80185 4.90970 4.99563 5.03730 5.12443 5.13991 5.17318 5.22143 5.23853 5.33596 5.38044 5.47096 5.50334 5.53935 5.59471 5.64721 5.65374 5.67518 5.74316 5.79014 5.86925 5.88192 5.90965 5.97582 5.99357 6.03165 6.05682 6.10300 6.14205 6.20967 6.25692 6.33593 6.49255 6.61751 6.69416 6.82979 6.93266 7.48920 7.72834 8.25465 8.44433 9.55647 10.13852 10.48720 11.48341 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.002953 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.971634 B = 9480.966447 C = 9578.512621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C -0.074 4.074 4 C -0.125 4.125 5 C -0.157 4.157 6 C -0.104 4.104 7 C -0.155 4.155 8 C 0.528 3.472 9 O -0.542 6.542 10 N -0.605 5.605 11 C 0.087 3.913 12 C -0.137 4.137 13 C -0.110 4.110 14 C -0.105 4.105 15 H 0.073 0.927 16 C 0.160 3.840 17 N -0.730 5.730 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.118 3.882 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.384 0.616 51 H 0.254 0.746 52 H 0.065 0.935 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 -11.239 22.609 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C -0.077 4.077 4 C -0.162 4.162 5 C -0.214 4.214 6 C -0.141 4.141 7 C -0.212 4.212 8 C 0.316 3.684 9 O -0.419 6.419 10 N -0.338 5.338 11 C -0.035 4.035 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.125 4.125 15 H 0.091 0.909 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.004 4.004 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.079 0.921 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.218 0.782 51 H 0.064 0.936 52 H 0.083 0.917 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.979 -10.616 22.464 25.555 hybrid contribution 0.286 0.294 -1.061 1.138 sum -5.693 -10.321 21.403 24.434 Atomic orbital electron populations 1.21846 0.95387 1.01634 1.02381 1.22089 0.96873 0.94490 1.03634 1.20872 0.96959 0.96402 0.93487 1.21908 0.92630 0.98649 1.03043 1.21865 1.00824 0.96158 1.02561 1.21450 1.00977 0.99529 0.92161 1.21895 1.01623 1.00723 0.96933 1.20451 0.78453 0.84660 0.84791 1.90676 1.42128 1.22005 1.87125 1.48027 1.52326 1.27324 1.06093 1.22380 0.92753 0.86819 1.01559 1.21990 0.97121 1.01865 0.96581 1.21528 1.00880 0.96484 0.95899 1.21660 0.96667 0.97784 0.96361 0.90897 1.20589 0.91298 0.96622 0.88333 1.42353 1.03404 1.79534 1.12199 1.19286 0.92665 1.35525 0.89278 0.91162 1.24732 0.95229 1.02590 0.98568 1.69671 0.97036 1.55282 1.36338 0.86117 0.77227 0.78132 0.84740 1.20569 1.21897 1.21913 1.21626 0.96243 0.99724 0.82834 0.92089 0.92762 0.92579 0.89890 0.90717 0.90662 0.90347 0.92455 0.92009 0.92498 0.90780 0.91239 0.92478 0.92374 0.92757 0.91494 0.87874 0.91522 0.90905 0.90316 0.92147 0.96235 0.96248 0.78238 0.93624 0.91652 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.23 37.16 0.34 -0.96 16 2 C -0.13 -1.03 4.10 -26.73 -0.11 -1.14 16 3 C -0.07 -0.71 0.09 -155.66 -0.01 -0.73 16 4 C -0.13 -1.07 4.08 -26.73 -0.11 -1.18 16 5 C -0.16 -1.55 9.19 37.16 0.34 -1.21 16 6 C -0.10 -1.00 3.29 -26.73 -0.09 -1.09 16 7 C -0.15 -1.09 9.14 37.16 0.34 -0.75 16 8 C 0.53 7.05 4.55 -10.99 -0.05 7.00 16 9 O -0.54 -9.34 15.40 5.56 0.09 -9.25 16 10 N -0.61 -7.66 2.96 -172.76 -0.51 -8.17 16 11 C 0.09 0.87 3.87 -3.71 -0.01 0.85 16 12 C -0.14 -1.57 5.92 -26.61 -0.16 -1.72 16 13 C -0.11 -1.64 5.06 -26.66 -0.13 -1.78 16 14 C -0.11 -1.74 2.38 -90.46 -0.21 -1.96 16 15 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 16 C 0.16 3.27 5.65 -4.04 -0.02 3.25 16 17 N -0.73 -18.69 5.32 -59.91 -0.32 -19.01 16 18 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 C 0.12 1.73 5.73 -3.71 -0.02 1.71 16 27 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 28 H 0.05 0.56 7.39 -51.93 -0.38 0.18 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.61 4.29 -51.93 -0.22 0.39 16 31 H 0.07 0.46 6.72 -51.93 -0.35 0.11 16 32 H 0.07 0.51 6.82 -51.93 -0.35 0.15 16 33 H 0.08 0.67 4.91 -51.93 -0.26 0.41 16 34 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 35 H 0.06 0.58 6.14 -51.93 -0.32 0.26 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.82 6.20 -51.93 -0.32 0.50 16 38 H 0.07 0.73 6.34 -51.93 -0.33 0.40 16 39 H 0.06 0.36 6.55 -51.93 -0.34 0.02 16 40 H 0.06 0.38 6.46 -51.93 -0.34 0.05 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.60 7.97 -51.93 -0.41 0.19 16 43 H 0.10 0.83 2.74 -51.93 -0.14 0.68 16 44 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.39 7.17 -51.93 -0.37 1.02 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.38 10.25 6.86 -40.82 -0.28 9.97 16 51 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 52 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 53 H 0.09 1.49 7.00 -51.93 -0.36 1.12 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -32.30 380.20 -8.74 -41.04 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -9.27 Total: 6.83 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.16 Total: -7.10 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.11 Total: -54.92 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.30 -8.74 -41.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752809406.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.940 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds