Wall clock time and date at job start Fri Apr 10 2020 22:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 C 1.53001 * 109.47073 * 174.81782 * 3 2 1 5 5 C 1.53003 * 109.46765 * 187.00355 * 4 3 2 6 6 C 1.52999 * 109.47098 * 54.81647 * 3 2 1 7 7 C 1.52999 * 109.47420 * 60.00150 * 6 3 2 8 8 C 1.50707 * 109.47026 * 294.81894 * 3 2 1 9 9 O 1.21279 * 119.99915 * 127.23293 * 8 3 2 10 10 N 1.34770 * 119.99608 * 307.23262 * 8 3 2 11 11 C 1.46929 * 120.63529 * 354.67818 * 10 8 3 12 12 C 1.53196 * 108.77428 * 233.62971 * 11 10 8 13 13 C 1.53033 * 109.34122 * 305.34572 * 12 11 10 14 14 C 1.53114 * 109.50405 * 61.34943 * 13 12 11 15 15 H 1.08995 * 109.51398 * 58.62593 * 14 13 12 16 16 C 1.53001 * 109.48785 * 178.70081 * 14 13 12 17 17 N 1.46498 * 109.47089 * 294.85209 * 16 14 13 18 18 C 1.36937 * 119.99926 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99971 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00068 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00165 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46954 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47540 * 119.99509 * 22 20 18 25 25 H 1.48499 * 109.47165 * 239.99962 * 22 20 18 26 26 C 1.46934 * 120.62993 * 174.69756 * 10 8 3 27 27 H 1.08998 * 109.47703 * 300.00196 * 1 2 3 28 28 H 1.09000 * 109.47153 * 60.00439 * 1 2 3 29 29 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46970 * 239.99816 * 2 1 3 31 31 H 1.08997 * 109.46875 * 120.00004 * 2 1 3 32 32 H 1.08993 * 109.46863 * 307.00171 * 4 3 2 33 33 H 1.09001 * 109.47027 * 67.00417 * 4 3 2 34 34 H 1.08995 * 109.46770 * 299.99639 * 5 4 3 35 35 H 1.08997 * 109.46900 * 59.99943 * 5 4 3 36 36 H 1.08995 * 109.46742 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.46921 * 180.02562 * 6 3 2 38 38 H 1.09002 * 109.47052 * 300.00281 * 6 3 2 39 39 H 1.09001 * 109.46664 * 300.00182 * 7 6 3 40 40 H 1.09003 * 109.46838 * 59.99256 * 7 6 3 41 41 H 1.08994 * 109.47351 * 180.02562 * 7 6 3 42 42 H 1.09000 * 109.58927 * 113.84597 * 11 10 8 43 43 H 1.08998 * 109.70149 * 353.48513 * 11 10 8 44 44 H 1.09006 * 109.49682 * 65.31824 * 12 11 10 45 45 H 1.09001 * 109.49683 * 185.37655 * 12 11 10 46 46 H 1.09003 * 109.46183 * 181.40231 * 13 12 11 47 47 H 1.09004 * 109.46134 * 301.36298 * 13 12 11 48 48 H 1.09001 * 109.47021 * 54.85286 * 16 14 13 49 49 H 1.09005 * 109.46637 * 174.85678 * 16 14 13 50 50 H 0.97002 * 120.00062 * 0.02562 * 17 16 14 51 51 H 0.97000 * 119.99964 * 180.02562 * 21 20 18 52 52 H 1.08992 * 109.58609 * 246.15429 * 26 10 8 53 53 H 1.08995 * 109.58304 * 6.44320 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4445 0.1303 5 6 4.0594 2.8816 0.3058 6 6 1.4263 2.2004 1.1790 7 6 1.8272 1.5178 2.4883 8 6 1.6451 2.1149 -1.2897 9 8 1.0542 3.1737 -1.2653 10 7 1.9487 1.5396 -2.4699 11 6 2.7643 0.3184 -2.5198 12 6 3.9487 0.5547 -3.4622 13 6 3.4279 1.0178 -4.8246 14 6 2.6697 2.3379 -4.6603 15 1 3.3333 3.0876 -4.2293 16 6 2.1770 2.8171 -6.0272 17 7 3.3272 3.1376 -6.8761 18 6 3.1304 3.5901 -8.1534 19 1 2.1273 3.7112 -8.5349 20 6 4.2203 3.8932 -8.9579 21 7 5.4428 3.7462 -8.4928 22 14 3.9519 4.5099 -10.7006 23 1 2.4954 4.5865 -10.9798 24 1 4.5560 5.8585 -10.8471 25 1 4.5909 3.5743 -11.6606 26 6 1.4708 2.1218 -3.7315 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8557 0.8515 0.9972 33 1 4.0065 1.0152 -0.7688 34 1 3.7680 3.4745 -0.5611 35 1 3.6172 3.3108 1.2049 36 1 5.1454 2.8830 0.3981 37 1 1.7893 3.2282 1.1787 38 1 0.3403 2.1989 1.0861 39 1 1.4638 0.4901 2.4882 40 1 2.9132 1.5192 2.5810 41 1 1.3896 2.0575 3.3281 42 1 2.1606 -0.5092 -2.8921 43 1 3.1330 0.0818 -1.5217 44 1 4.6006 1.3208 -3.0423 45 1 4.5083 -0.3729 -3.5828 46 1 4.2676 1.1626 -5.5044 47 1 2.7566 0.2622 -5.2328 48 1 1.5867 2.0303 -6.4969 49 1 1.5605 3.7070 -5.8996 50 1 4.2281 3.0292 -6.5333 51 1 6.2043 3.9584 -9.0549 52 1 0.7617 1.4412 -4.2025 53 1 0.9838 3.0763 -3.5320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752809406.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:12 Heat of formation + Delta-G solvation = -54.501172 kcal Electronic energy + Delta-G solvation = -28097.988512 eV Core-core repulsion = 24582.715811 eV Total energy + Delta-G solvation = -3515.272701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15475 -39.31786 -37.93511 -36.65327 -34.44308 -33.25431 -32.90997 -32.13407 -31.19206 -28.37201 -27.19207 -26.53394 -24.96824 -24.60916 -23.26200 -22.85289 -21.87907 -20.73590 -19.49512 -19.17392 -17.49105 -17.15851 -16.87505 -16.77331 -16.29388 -15.90798 -15.58831 -15.51085 -15.19990 -14.85653 -14.73449 -14.37806 -14.05932 -13.93702 -13.88974 -13.67269 -13.56710 -13.42727 -13.28621 -13.01810 -12.82494 -12.75332 -12.55666 -12.46753 -12.18921 -12.13806 -12.11799 -12.03641 -11.83057 -11.74068 -11.60549 -11.53953 -11.39360 -11.24220 -10.96170 -10.92894 -10.40974 -9.60951 -9.02563 -7.97706 -5.26740 1.45301 1.46434 1.56614 1.67224 2.01182 2.54147 3.35497 3.41485 3.62466 3.75596 3.76077 3.85313 3.89175 4.01323 4.10245 4.23572 4.27674 4.35739 4.39971 4.43847 4.47673 4.51740 4.54295 4.56756 4.63848 4.70954 4.76101 4.79261 4.82498 4.85946 4.92562 4.94631 4.99534 5.05326 5.08445 5.12261 5.17606 5.22252 5.26884 5.30355 5.33450 5.34377 5.39268 5.39887 5.45527 5.49473 5.53759 5.67082 6.24543 6.48377 7.21589 7.30883 8.05415 8.30277 9.26073 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.002953 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.971634 B = 9480.966447 C = 9578.512621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C -0.068 4.068 4 C -0.123 4.123 5 C -0.156 4.156 6 C -0.102 4.102 7 C -0.148 4.148 8 C 0.521 3.479 9 O -0.592 6.592 10 N -0.605 5.605 11 C 0.086 3.914 12 C -0.130 4.130 13 C -0.105 4.105 14 C -0.091 4.091 15 H 0.046 0.954 16 C 0.159 3.841 17 N -0.741 5.741 18 C -0.247 4.247 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.294 1.294 25 H -0.289 1.289 26 C 0.126 3.874 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.018 0.982 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.029 0.971 49 H 0.009 0.991 50 H 0.375 0.625 51 H 0.252 0.748 52 H 0.082 0.918 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -14.080 24.102 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C -0.071 4.071 4 C -0.159 4.159 5 C -0.214 4.214 6 C -0.140 4.140 7 C -0.205 4.205 8 C 0.312 3.688 9 O -0.472 6.472 10 N -0.336 5.336 11 C -0.035 4.035 12 C -0.168 4.168 13 C -0.143 4.143 14 C -0.111 4.111 15 H 0.065 0.935 16 C 0.032 3.968 17 N -0.384 5.384 18 C -0.378 4.378 19 H 0.092 0.908 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.221 1.221 25 H -0.216 1.216 26 C 0.003 3.997 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.064 0.936 47 H 0.089 0.911 48 H 0.047 0.953 49 H 0.027 0.973 50 H 0.207 0.793 51 H 0.061 0.939 52 H 0.100 0.900 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.026 -13.488 23.972 28.159 hybrid contribution 0.239 1.236 -1.508 1.965 sum -5.787 -12.252 22.465 26.235 Atomic orbital electron populations 1.21841 0.96060 1.02301 1.01007 1.22141 0.96238 0.92811 1.05530 1.20922 0.97890 0.97414 0.90885 1.21963 0.91366 0.97925 1.04696 1.21855 1.01661 0.96882 1.00973 1.21415 0.99980 0.98756 0.93878 1.21863 1.02346 1.01217 0.95061 1.21289 0.77396 0.84092 0.86067 1.90649 1.44390 1.24330 1.87846 1.48120 1.52390 1.28015 1.05112 1.22667 0.92035 0.85926 1.02856 1.21958 0.97764 1.02743 0.94375 1.21453 0.99614 0.95532 0.97724 1.21462 0.97158 0.98151 0.94311 0.93515 1.20718 0.89874 0.96392 0.89838 1.42530 1.04287 1.79495 1.12132 1.19669 0.92862 1.34883 0.90415 0.90835 1.25576 0.95019 1.03443 1.02682 1.69825 0.97736 1.56642 1.37736 0.85054 0.77696 0.77108 0.79777 1.19172 1.22073 1.21640 1.21363 0.95317 0.99342 0.83698 0.92237 0.95500 0.90794 0.88915 0.87744 0.87325 0.89951 0.96229 0.91715 0.91299 0.93171 0.92779 0.90869 0.91285 0.92524 0.89241 0.85125 0.92593 0.87990 0.93574 0.91075 0.95317 0.97261 0.79305 0.93934 0.90000 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.23 71.98 0.66 -1.57 16 2 C -0.13 -1.52 4.10 30.59 0.13 -1.40 16 3 C -0.07 -1.19 0.09 -52.93 0.00 -1.19 16 4 C -0.12 -1.75 4.08 30.60 0.12 -1.63 16 5 C -0.16 -2.99 9.19 71.98 0.66 -2.33 16 6 C -0.10 -1.89 3.29 30.59 0.10 -1.79 16 7 C -0.15 -1.66 9.14 71.98 0.66 -1.00 16 8 C 0.52 13.99 4.55 87.66 0.40 14.39 16 9 O -0.59 -21.58 15.40 -3.03 -0.05 -21.63 16 10 N -0.60 -14.95 2.96 -818.89 -2.42 -17.37 16 11 C 0.09 1.46 3.87 86.36 0.33 1.79 16 12 C -0.13 -2.71 5.92 30.67 0.18 -2.53 16 13 C -0.11 -3.11 5.06 30.64 0.16 -2.96 16 14 C -0.09 -3.13 2.38 -10.69 -0.03 -3.15 16 15 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.16 6.72 5.65 86.38 0.49 7.21 16 17 N -0.74 -39.19 5.32 -343.45 -1.83 -41.02 16 18 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 19 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -60.26 13.06 21.65 0.28 -59.97 16 22 Si 0.97 47.10 29.55 68.60 2.03 49.12 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 C 0.13 3.78 5.73 86.36 0.49 4.27 16 27 H 0.06 0.87 6.34 -2.39 -0.02 0.85 16 28 H 0.03 0.53 7.39 -2.39 -0.02 0.51 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.92 4.29 -2.39 -0.01 0.91 16 31 H 0.10 0.69 6.72 -2.39 -0.02 0.68 16 32 H 0.11 0.91 6.82 -2.39 -0.02 0.90 16 33 H 0.08 1.13 4.91 -2.39 -0.01 1.12 16 34 H 0.02 0.50 7.45 -2.39 -0.02 0.48 16 35 H 0.06 1.18 6.14 -2.39 -0.01 1.16 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.15 6.20 -2.39 -0.01 1.14 16 38 H 0.05 1.15 6.34 -2.39 -0.02 1.13 16 39 H 0.07 0.61 6.55 -2.39 -0.02 0.59 16 40 H 0.07 0.64 6.46 -2.39 -0.02 0.62 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 1.22 7.97 -2.39 -0.02 1.20 16 43 H 0.13 1.54 2.74 -2.39 -0.01 1.54 16 44 H 0.06 1.30 8.07 -2.38 -0.02 1.28 16 45 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.05 1.67 7.17 -2.39 -0.02 1.65 16 47 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 48 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 50 H 0.37 20.90 6.86 -92.71 -0.64 20.27 16 51 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 52 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 53 H 0.07 2.30 7.00 -2.39 -0.02 2.28 16 Total: -1.00 -73.83 380.20 3.93 -69.90 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.26 Total: 30.19 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.66 Total: -9.22 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -3.97 Total: -118.36 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.83 3.93 -69.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752809406.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.399 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds