Wall clock time and date at job start Fri Apr 10 2020 22:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46950 * 2 1 4 4 C 1.53001 * 109.47082 * 59.99689 * 3 2 1 5 5 C 1.53005 * 109.46847 * 53.60239 * 4 3 2 6 6 C 1.52997 * 109.47058 * 300.00353 * 3 2 1 7 7 C 1.53003 * 109.46866 * 305.68338 * 6 3 2 8 8 C 1.50695 * 109.47302 * 179.97438 * 3 2 1 9 9 O 1.21290 * 119.99694 * 1.79959 * 8 3 2 10 10 N 1.34768 * 120.00196 * 181.79829 * 8 3 2 11 11 C 1.46921 * 120.63283 * 355.02327 * 10 8 3 12 12 C 1.53195 * 108.77828 * 126.36916 * 11 10 8 13 13 C 1.53037 * 109.31290 * 54.63561 * 12 11 10 14 14 C 1.53044 * 109.53662 * 298.63876 * 13 12 11 15 15 H 1.08999 * 109.49352 * 301.41031 * 14 13 12 16 16 C 1.53005 * 109.49529 * 181.31727 * 14 13 12 17 17 N 1.46502 * 109.47073 * 65.15729 * 16 14 13 18 18 C 1.36938 * 119.99665 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00152 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99844 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46792 * 60.00625 * 22 20 18 24 24 H 1.48496 * 109.47043 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47120 * 300.00463 * 22 20 18 26 26 C 1.46933 * 120.63055 * 175.00260 * 10 8 3 27 27 H 1.09000 * 109.47436 * 60.00057 * 1 2 3 28 28 H 1.09005 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47134 * 299.99892 * 1 2 3 30 30 H 1.08991 * 109.47174 * 239.99702 * 2 1 3 31 31 H 1.09001 * 109.46700 * 120.00035 * 2 1 3 32 32 H 1.08998 * 109.47257 * 173.59734 * 4 3 2 33 33 H 1.08997 * 109.47764 * 293.60208 * 4 3 2 34 34 H 1.08997 * 109.47117 * 60.00012 * 5 4 3 35 35 H 1.09003 * 109.47137 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47352 * 299.99287 * 5 4 3 37 37 H 1.08994 * 109.47706 * 65.68492 * 6 3 2 38 38 H 1.08999 * 109.46875 * 185.68984 * 6 3 2 39 39 H 1.09000 * 109.47009 * 180.02562 * 7 6 3 40 40 H 1.08997 * 109.47150 * 300.00012 * 7 6 3 41 41 H 1.08998 * 109.46984 * 60.00094 * 7 6 3 42 42 H 1.09006 * 109.58839 * 246.15985 * 11 10 8 43 43 H 1.09002 * 109.58797 * 6.43887 * 11 10 8 44 44 H 1.09001 * 109.49755 * 174.58678 * 12 11 10 45 45 H 1.09000 * 109.49303 * 294.68121 * 12 11 10 46 46 H 1.09007 * 109.46038 * 58.65252 * 13 12 11 47 47 H 1.08992 * 109.46246 * 178.62744 * 13 12 11 48 48 H 1.08995 * 109.46810 * 185.15837 * 16 14 13 49 49 H 1.08997 * 109.47041 * 305.15731 * 16 14 13 50 50 H 0.96994 * 119.99983 * 0.02562 * 17 16 14 51 51 H 0.96997 * 119.99998 * 179.97438 * 21 20 18 52 52 H 1.09000 * 109.58149 * 353.41334 * 26 10 8 53 53 H 1.08999 * 109.58695 * 113.84213 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.9044 1.3557 2.4933 6 6 1.5299 2.1638 -1.2492 7 6 1.9199 1.3647 -2.4943 8 6 3.5469 1.4426 0.0006 9 8 4.1534 0.3927 -0.0319 10 7 4.2207 2.6092 0.0374 11 6 3.5043 3.8900 -0.0326 12 6 3.9237 4.7554 1.1598 13 6 5.4482 4.8882 1.1776 14 6 6.0806 3.5039 1.3391 15 1 5.7252 3.0472 2.2627 16 6 7.6037 3.6411 1.3897 17 7 7.9876 4.3816 2.5941 18 6 9.3093 4.6281 2.8540 19 1 10.0686 4.2769 2.1710 20 6 9.6730 5.3302 3.9949 21 7 8.7476 5.7587 4.8271 22 14 11.4759 5.6670 4.3492 23 1 12.0587 6.4614 3.2381 24 1 11.5972 6.4277 5.6188 25 1 12.2051 4.3793 4.4727 26 6 5.6858 2.6244 0.1486 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.9837 3.1530 1.3084 33 1 0.4460 2.2640 1.1939 34 1 2.9884 1.2555 2.5487 35 1 1.5414 1.8697 3.3833 36 1 1.4506 0.3664 2.4343 37 1 0.4447 2.2528 -1.1998 38 1 1.9740 3.1578 -1.3016 39 1 1.5569 1.8788 -3.3843 40 1 3.0051 1.2758 -2.5438 41 1 1.4759 0.3707 -2.4419 42 1 3.7582 4.4004 -0.9618 43 1 2.4299 3.7102 0.0037 44 1 3.4735 5.7439 1.0682 45 1 3.5885 4.2868 2.0851 46 1 5.7848 5.3341 0.2416 47 1 5.7478 5.5236 2.0109 48 1 8.0571 2.6502 1.4124 49 1 7.9496 4.1787 0.5069 50 1 7.3056 4.6967 3.2076 51 1 9.0018 6.2490 5.6245 52 1 6.0506 1.6095 0.3072 53 1 6.1175 3.0315 -0.7656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752809407.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:15 Heat of formation + Delta-G solvation = -34.734706 kcal Electronic energy + Delta-G solvation = -28152.767636 eV Core-core repulsion = 24638.352073 eV Total energy + Delta-G solvation = -3514.415563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21964 -38.17127 -36.92222 -34.97431 -32.81326 -32.52849 -31.71191 -31.00260 -29.79530 -27.45643 -25.79264 -25.21158 -24.21643 -22.83418 -22.34461 -21.92204 -20.64486 -19.56137 -18.53868 -17.11182 -16.46792 -16.27577 -16.08764 -15.38055 -15.07695 -14.39605 -14.33295 -14.24491 -13.99486 -13.58721 -13.34716 -13.31234 -13.17688 -12.92571 -12.88653 -12.65648 -12.56137 -12.29852 -12.05485 -11.92028 -11.79718 -11.71765 -11.43489 -11.21753 -10.99424 -10.91069 -10.84667 -10.79812 -10.67443 -10.53153 -10.35408 -10.18631 -10.12870 -9.97966 -9.70210 -9.38515 -8.85022 -8.50783 -6.89467 -5.74696 -3.02818 2.69707 3.03292 3.45664 3.49823 3.50960 4.25720 4.34262 4.58678 4.61452 4.73286 4.81009 4.91219 4.99673 5.03877 5.12057 5.14896 5.18402 5.22451 5.24905 5.34267 5.38778 5.46400 5.50726 5.55164 5.59231 5.64872 5.65950 5.67831 5.75766 5.79680 5.86658 5.89425 5.90407 5.98716 6.00709 6.03793 6.05994 6.11517 6.13894 6.20900 6.25562 6.34724 6.49102 6.61423 6.69220 6.82584 6.92670 7.48981 7.71805 8.25393 8.44555 9.55594 10.13709 10.48672 11.48288 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.026307 B = 0.002994 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.114214 B = 9349.965025 C = 9461.548047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C -0.074 4.074 4 C -0.130 4.130 5 C -0.156 4.156 6 C -0.130 4.130 7 C -0.156 4.156 8 C 0.529 3.471 9 O -0.543 6.543 10 N -0.605 5.605 11 C 0.085 3.915 12 C -0.138 4.138 13 C -0.110 4.110 14 C -0.105 4.105 15 H 0.072 0.928 16 C 0.160 3.840 17 N -0.730 5.730 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.119 3.881 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.384 0.616 51 H 0.255 0.745 52 H 0.090 0.910 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.100 -6.131 -12.540 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.077 4.077 4 C -0.167 4.167 5 C -0.214 4.214 6 C -0.167 4.167 7 C -0.213 4.213 8 C 0.317 3.683 9 O -0.420 6.420 10 N -0.337 5.337 11 C -0.038 4.038 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.125 4.125 15 H 0.091 0.909 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.004 4.004 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.037 0.963 49 H 0.038 0.962 50 H 0.218 0.782 51 H 0.065 0.935 52 H 0.108 0.892 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.586 -6.690 -12.572 25.032 hybrid contribution 0.909 0.458 0.514 1.141 sum -19.676 -6.231 -12.058 23.904 Atomic orbital electron populations 1.21899 0.95674 1.01647 1.01966 1.21447 0.95255 0.93888 1.03505 1.20872 0.91739 0.98351 0.96774 1.22006 1.01596 0.99883 0.93221 1.21858 1.02103 1.00332 0.97066 1.22013 1.01762 0.99666 0.93259 1.21855 1.01870 1.00560 0.97004 1.20446 0.89523 0.83150 0.75203 1.90676 1.70201 1.31088 1.50073 1.48025 1.07426 1.05657 1.72627 1.22413 0.98006 0.84349 0.98990 1.22000 0.97887 0.99537 0.98166 1.21515 0.93065 0.97227 1.02980 1.21656 0.97367 0.95520 0.97933 0.90918 1.20585 0.90173 0.95144 0.90931 1.42332 1.05486 1.65976 1.23661 1.19198 0.84145 1.28827 1.04777 0.91267 1.24728 0.97485 1.01252 0.97559 1.69648 1.31410 1.43204 1.14108 0.86261 0.84889 0.77821 0.77192 1.21298 1.21711 1.21290 1.21626 0.78716 1.01799 0.98237 0.92479 0.92759 0.92373 0.91047 0.90976 0.89923 0.90744 0.92556 0.92420 0.92104 0.90616 0.90217 0.92603 0.92707 0.91985 0.91521 0.87705 0.90907 0.91407 0.92140 0.90304 0.96260 0.96222 0.78237 0.93514 0.89183 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.16 37.16 0.34 -0.77 16 2 C -0.10 -1.01 3.25 -26.73 -0.09 -1.10 16 3 C -0.07 -0.72 0.09 -155.66 -0.01 -0.74 16 4 C -0.13 -1.13 4.08 -26.73 -0.11 -1.24 16 5 C -0.16 -1.59 9.21 37.16 0.34 -1.25 16 6 C -0.13 -1.01 4.11 -26.73 -0.11 -1.12 16 7 C -0.16 -1.32 9.23 37.16 0.34 -0.97 16 8 C 0.53 7.08 4.55 -10.99 -0.05 7.03 16 9 O -0.54 -9.34 15.42 5.55 0.09 -9.25 16 10 N -0.60 -7.68 2.97 -172.76 -0.51 -8.19 16 11 C 0.08 0.84 4.05 -3.71 -0.02 0.83 16 12 C -0.14 -1.55 5.74 -26.61 -0.15 -1.70 16 13 C -0.11 -1.63 5.06 -26.69 -0.13 -1.77 16 14 C -0.11 -1.73 2.37 -90.50 -0.21 -1.95 16 15 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 16 C 0.16 3.27 5.65 -4.04 -0.02 3.24 16 17 N -0.73 -18.62 5.32 -59.91 -0.32 -18.94 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.12 1.74 5.70 -3.71 -0.02 1.72 16 27 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 6.53 -51.93 -0.34 0.05 16 30 H 0.07 0.77 6.28 -51.93 -0.33 0.44 16 31 H 0.07 0.81 6.31 -51.93 -0.33 0.48 16 32 H 0.08 0.72 3.92 -51.93 -0.20 0.52 16 33 H 0.07 0.52 6.79 -51.93 -0.35 0.16 16 34 H 0.06 0.72 7.43 -51.93 -0.39 0.33 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.58 6.24 -51.93 -0.32 0.26 16 37 H 0.08 0.47 6.75 -51.93 -0.35 0.12 16 38 H 0.08 0.59 4.69 -51.93 -0.24 0.34 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.58 7.40 -51.93 -0.38 0.19 16 41 H 0.06 0.51 6.33 -51.93 -0.33 0.18 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.11 0.84 2.67 -51.93 -0.14 0.70 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 46 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 47 H 0.08 1.39 7.16 -51.93 -0.37 1.02 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.38 10.21 6.86 -40.82 -0.28 9.93 16 51 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 52 H 0.09 1.48 7.04 -51.93 -0.37 1.11 16 53 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -32.15 379.40 -8.71 -40.86 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -9.23 Total: 7.06 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.15 Total: -7.21 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.11 Total: -54.81 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.15 -8.71 -40.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752809407.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.124 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds