Wall clock time and date at job start Fri Apr 10 2020 22:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46950 * 2 1 4 4 C 1.53001 * 109.47082 * 59.99689 * 3 2 1 5 5 C 1.53005 * 109.46847 * 53.60239 * 4 3 2 6 6 C 1.52997 * 109.47058 * 300.00353 * 3 2 1 7 7 C 1.53003 * 109.46866 * 305.68338 * 6 3 2 8 8 C 1.50695 * 109.47302 * 179.97438 * 3 2 1 9 9 O 1.21290 * 119.99694 * 1.79959 * 8 3 2 10 10 N 1.34768 * 120.00196 * 181.79829 * 8 3 2 11 11 C 1.46921 * 120.63283 * 355.02327 * 10 8 3 12 12 C 1.53195 * 108.77828 * 126.36916 * 11 10 8 13 13 C 1.53037 * 109.31290 * 54.63561 * 12 11 10 14 14 C 1.53044 * 109.53662 * 298.63876 * 13 12 11 15 15 H 1.08999 * 109.49352 * 301.41031 * 14 13 12 16 16 C 1.53005 * 109.49529 * 181.31727 * 14 13 12 17 17 N 1.46502 * 109.47073 * 65.15729 * 16 14 13 18 18 C 1.36938 * 119.99665 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00152 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99844 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46792 * 60.00625 * 22 20 18 24 24 H 1.48496 * 109.47043 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47120 * 300.00463 * 22 20 18 26 26 C 1.46933 * 120.63055 * 175.00260 * 10 8 3 27 27 H 1.09000 * 109.47436 * 60.00057 * 1 2 3 28 28 H 1.09005 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47134 * 299.99892 * 1 2 3 30 30 H 1.08991 * 109.47174 * 239.99702 * 2 1 3 31 31 H 1.09001 * 109.46700 * 120.00035 * 2 1 3 32 32 H 1.08998 * 109.47257 * 173.59734 * 4 3 2 33 33 H 1.08997 * 109.47764 * 293.60208 * 4 3 2 34 34 H 1.08997 * 109.47117 * 60.00012 * 5 4 3 35 35 H 1.09003 * 109.47137 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47352 * 299.99287 * 5 4 3 37 37 H 1.08994 * 109.47706 * 65.68492 * 6 3 2 38 38 H 1.08999 * 109.46875 * 185.68984 * 6 3 2 39 39 H 1.09000 * 109.47009 * 180.02562 * 7 6 3 40 40 H 1.08997 * 109.47150 * 300.00012 * 7 6 3 41 41 H 1.08998 * 109.46984 * 60.00094 * 7 6 3 42 42 H 1.09006 * 109.58839 * 246.15985 * 11 10 8 43 43 H 1.09002 * 109.58797 * 6.43887 * 11 10 8 44 44 H 1.09001 * 109.49755 * 174.58678 * 12 11 10 45 45 H 1.09000 * 109.49303 * 294.68121 * 12 11 10 46 46 H 1.09007 * 109.46038 * 58.65252 * 13 12 11 47 47 H 1.08992 * 109.46246 * 178.62744 * 13 12 11 48 48 H 1.08995 * 109.46810 * 185.15837 * 16 14 13 49 49 H 1.08997 * 109.47041 * 305.15731 * 16 14 13 50 50 H 0.96994 * 119.99983 * 0.02562 * 17 16 14 51 51 H 0.96997 * 119.99998 * 179.97438 * 21 20 18 52 52 H 1.09000 * 109.58149 * 353.41334 * 26 10 8 53 53 H 1.08999 * 109.58695 * 113.84213 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.9044 1.3557 2.4933 6 6 1.5299 2.1638 -1.2492 7 6 1.9199 1.3647 -2.4943 8 6 3.5469 1.4426 0.0006 9 8 4.1534 0.3927 -0.0319 10 7 4.2207 2.6092 0.0374 11 6 3.5043 3.8900 -0.0326 12 6 3.9237 4.7554 1.1598 13 6 5.4482 4.8882 1.1776 14 6 6.0806 3.5039 1.3391 15 1 5.7252 3.0472 2.2627 16 6 7.6037 3.6411 1.3897 17 7 7.9876 4.3816 2.5941 18 6 9.3093 4.6281 2.8540 19 1 10.0686 4.2769 2.1710 20 6 9.6730 5.3302 3.9949 21 7 8.7476 5.7587 4.8271 22 14 11.4759 5.6670 4.3492 23 1 12.0587 6.4614 3.2381 24 1 11.5972 6.4277 5.6188 25 1 12.2051 4.3793 4.4727 26 6 5.6858 2.6244 0.1486 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.9837 3.1530 1.3084 33 1 0.4460 2.2640 1.1939 34 1 2.9884 1.2555 2.5487 35 1 1.5414 1.8697 3.3833 36 1 1.4506 0.3664 2.4343 37 1 0.4447 2.2528 -1.1998 38 1 1.9740 3.1578 -1.3016 39 1 1.5569 1.8788 -3.3843 40 1 3.0051 1.2758 -2.5438 41 1 1.4759 0.3707 -2.4419 42 1 3.7582 4.4004 -0.9618 43 1 2.4299 3.7102 0.0037 44 1 3.4735 5.7439 1.0682 45 1 3.5885 4.2868 2.0851 46 1 5.7848 5.3341 0.2416 47 1 5.7478 5.5236 2.0109 48 1 8.0571 2.6502 1.4124 49 1 7.9496 4.1787 0.5069 50 1 7.3056 4.6967 3.2076 51 1 9.0018 6.2490 5.6245 52 1 6.0506 1.6095 0.3072 53 1 6.1175 3.0315 -0.7656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752809407.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:14 Heat of formation + Delta-G solvation = -53.980374 kcal Electronic energy + Delta-G solvation = -28153.602191 eV Core-core repulsion = 24638.352073 eV Total energy + Delta-G solvation = -3515.250118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17300 -39.31106 -37.95138 -36.65055 -34.43066 -33.25416 -32.92275 -32.14651 -31.18764 -28.37399 -27.18335 -26.53671 -24.96219 -24.60387 -23.26141 -22.85928 -21.89111 -20.72096 -19.47469 -19.16581 -17.49074 -17.22888 -16.90598 -16.76188 -16.25390 -15.91705 -15.58038 -15.52455 -15.18026 -14.87151 -14.74501 -14.43942 -14.06448 -13.91062 -13.81469 -13.66681 -13.58797 -13.43201 -13.27527 -13.01290 -12.77456 -12.75236 -12.55114 -12.47526 -12.22265 -12.15849 -12.12979 -12.05840 -11.83711 -11.73406 -11.60529 -11.53837 -11.39273 -11.24826 -10.94970 -10.93154 -10.40492 -9.61796 -9.02317 -7.97171 -5.26211 1.45317 1.48751 1.54824 1.66359 2.01559 2.54628 3.35664 3.41423 3.61991 3.75354 3.76189 3.86214 3.88409 4.01687 4.08927 4.25342 4.26433 4.34839 4.40031 4.44615 4.47133 4.50394 4.54845 4.55978 4.63368 4.71136 4.75723 4.78818 4.82594 4.85746 4.92489 4.94379 4.99367 5.05376 5.07513 5.11612 5.18042 5.21665 5.26728 5.30443 5.32989 5.33897 5.38864 5.40235 5.45315 5.49684 5.53651 5.66934 6.24803 6.48021 7.20952 7.31289 8.05867 8.30950 9.26171 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.026307 B = 0.002994 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.114214 B = 9349.965025 C = 9461.548047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.068 4.068 4 C -0.127 4.127 5 C -0.156 4.156 6 C -0.127 4.127 7 C -0.155 4.155 8 C 0.522 3.478 9 O -0.592 6.592 10 N -0.605 5.605 11 C 0.083 3.917 12 C -0.130 4.130 13 C -0.106 4.106 14 C -0.090 4.090 15 H 0.049 0.951 16 C 0.159 3.841 17 N -0.741 5.741 18 C -0.250 4.250 19 H 0.073 0.927 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.280 1.280 26 C 0.127 3.873 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.018 0.982 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.046 0.954 48 H 0.009 0.991 49 H 0.028 0.972 50 H 0.375 0.625 51 H 0.252 0.748 52 H 0.065 0.935 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.448 -4.891 -14.073 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.071 4.071 4 C -0.164 4.164 5 C -0.213 4.213 6 C -0.164 4.164 7 C -0.212 4.212 8 C 0.312 3.688 9 O -0.472 6.472 10 N -0.336 5.336 11 C -0.037 4.037 12 C -0.168 4.168 13 C -0.143 4.143 14 C -0.110 4.110 15 H 0.067 0.933 16 C 0.032 3.968 17 N -0.384 5.384 18 C -0.382 4.382 19 H 0.091 0.909 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.207 1.207 26 C 0.003 3.997 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.151 0.849 44 H 0.120 0.880 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.027 0.973 49 H 0.046 0.954 50 H 0.207 0.793 51 H 0.061 0.939 52 H 0.084 0.916 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.949 -5.445 -14.143 27.501 hybrid contribution 1.670 -0.005 0.971 1.932 sum -21.279 -5.450 -13.172 25.612 Atomic orbital electron populations 1.21867 0.93078 1.02360 1.03202 1.21412 0.97361 0.93595 1.01643 1.20921 0.88601 0.98958 0.98666 1.22053 1.03547 0.99276 0.91488 1.21849 0.99631 1.01191 0.98658 1.22071 1.03568 0.99405 0.91328 1.21845 0.99982 1.01056 0.98336 1.21265 0.91261 0.82417 0.73866 1.90648 1.71491 1.32861 1.52197 1.48114 1.06485 1.06911 1.72101 1.22694 0.99243 0.82631 0.99174 1.21964 0.94873 1.01428 0.98556 1.21439 0.95896 0.95017 1.01978 1.21448 0.94620 0.97169 0.97774 0.93261 1.20709 0.93045 0.93821 0.89240 1.42501 1.04562 1.66372 1.24942 1.19601 0.85443 1.28277 1.04849 0.90894 1.25570 1.01807 1.01612 0.97585 1.69808 1.33373 1.44195 1.14498 0.85196 0.79809 0.77716 0.76946 1.20164 1.21880 1.20668 1.21355 0.80676 0.99906 0.97735 0.90835 0.92520 0.91322 0.92629 0.93335 0.89534 0.87466 0.96242 0.91406 0.91801 0.87600 0.89203 0.90743 0.95571 0.92129 0.89514 0.84933 0.88012 0.92192 0.91246 0.93484 0.97271 0.95443 0.79267 0.93902 0.91637 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.16 71.98 0.66 -1.04 16 2 C -0.10 -1.91 3.25 30.60 0.10 -1.82 16 3 C -0.07 -1.21 0.09 -52.93 0.00 -1.22 16 4 C -0.13 -1.86 4.08 30.60 0.12 -1.74 16 5 C -0.16 -3.07 9.21 71.98 0.66 -2.41 16 6 C -0.13 -1.51 4.11 30.59 0.13 -1.39 16 7 C -0.16 -2.28 9.23 71.98 0.66 -1.61 16 8 C 0.52 14.04 4.55 87.66 0.40 14.44 16 9 O -0.59 -21.48 15.42 -3.06 -0.05 -21.52 16 10 N -0.60 -15.01 2.97 -818.90 -2.43 -17.44 16 11 C 0.08 1.42 4.05 86.36 0.35 1.77 16 12 C -0.13 -2.66 5.74 30.67 0.18 -2.49 16 13 C -0.11 -3.10 5.06 30.62 0.15 -2.94 16 14 C -0.09 -3.08 2.37 -10.71 -0.03 -3.10 16 15 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 16 C 0.16 6.71 5.65 86.38 0.49 7.20 16 17 N -0.74 -39.02 5.32 -343.44 -1.83 -40.84 16 18 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 19 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 21 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 22 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 C 0.13 3.81 5.70 86.36 0.49 4.30 16 27 H 0.07 0.63 6.56 -2.39 -0.02 0.61 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.66 6.53 -2.39 -0.02 0.65 16 30 H 0.06 1.20 6.28 -2.39 -0.02 1.19 16 31 H 0.05 1.12 6.31 -2.39 -0.02 1.11 16 32 H 0.09 1.22 3.92 -2.39 -0.01 1.21 16 33 H 0.11 0.96 6.79 -2.39 -0.02 0.94 16 34 H 0.02 0.51 7.43 -2.39 -0.02 0.49 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.19 6.24 -2.39 -0.01 1.18 16 37 H 0.11 0.72 6.75 -2.39 -0.02 0.70 16 38 H 0.09 0.91 4.69 -2.39 -0.01 0.90 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.03 0.53 7.40 -2.39 -0.02 0.51 16 41 H 0.06 0.90 6.33 -2.39 -0.02 0.88 16 42 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.13 1.57 2.67 -2.39 -0.01 1.56 16 44 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.34 7.53 -2.39 -0.02 1.33 16 46 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.05 1.69 7.16 -2.39 -0.02 1.67 16 48 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.37 20.80 6.86 -92.71 -0.64 20.16 16 51 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 52 H 0.07 2.30 7.04 -2.39 -0.02 2.28 16 53 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -73.28 379.40 3.94 -69.34 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.26 Total: 30.67 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 5.67 Total: -9.46 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -3.97 Total: -118.01 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -73.28 3.94 -69.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752809407.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.358 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds