Wall clock time and date at job start Fri Apr 10 2020 22:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47448 * 2 1 4 4 C 1.53003 * 109.47321 * 184.68219 * 3 2 1 5 5 C 1.52998 * 109.46877 * 297.52442 * 4 3 2 6 6 C 1.53002 * 109.47350 * 295.30768 * 5 4 3 7 7 C 1.52992 * 109.47332 * 185.03479 * 6 5 4 8 8 C 1.50703 * 109.46791 * 57.52169 * 4 3 2 9 9 O 1.21279 * 119.99808 * 256.13444 * 8 4 3 10 10 N 1.34776 * 120.00087 * 76.13838 * 8 4 3 11 11 C 1.46927 * 120.62945 * 354.52471 * 10 8 4 12 12 C 1.53189 * 108.77534 * 233.63094 * 11 10 8 13 13 C 1.53044 * 109.31513 * 305.36494 * 12 11 10 14 14 C 1.53042 * 109.53524 * 61.36320 * 13 12 11 15 15 H 1.09001 * 109.49687 * 58.58813 * 14 13 12 16 16 N 1.46497 * 109.52147 * 178.67044 * 14 13 12 17 17 C 1.46506 * 119.99950 * 59.92100 * 16 14 13 18 18 C 1.36938 * 120.00149 * 239.91962 * 16 14 13 19 19 H 1.08000 * 119.99857 * 21.26582 * 18 16 14 20 20 C 1.38809 * 119.99941 * 201.27448 * 18 16 14 21 21 N 1.31615 * 120.00545 * 11.45076 * 20 18 16 22 22 Si 1.86807 * 119.99706 * 191.45315 * 20 18 16 23 23 H 1.48503 * 109.46977 * 89.99655 * 22 20 18 24 24 H 1.48502 * 109.47226 * 209.99478 * 22 20 18 25 25 H 1.48496 * 109.46988 * 330.00037 * 22 20 18 26 26 C 1.46927 * 120.63277 * 174.54611 * 10 8 4 27 27 H 1.08996 * 109.47347 * 59.99724 * 1 2 3 28 28 H 1.08997 * 109.47405 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47041 * 299.99866 * 1 2 3 30 30 H 1.09005 * 109.46769 * 239.99663 * 2 1 3 31 31 H 1.09009 * 109.47202 * 120.00524 * 2 1 3 32 32 H 1.09004 * 109.47082 * 64.68320 * 3 2 1 33 33 H 1.09000 * 109.47122 * 304.68496 * 3 2 1 34 34 H 1.08995 * 109.46888 * 177.51912 * 4 3 2 35 35 H 1.08997 * 109.47522 * 55.31375 * 5 4 3 36 36 H 1.09002 * 109.46599 * 175.31390 * 5 4 3 37 37 H 1.09001 * 109.47093 * 305.04051 * 6 5 4 38 38 H 1.08997 * 109.46514 * 65.03618 * 6 5 4 39 39 H 1.09001 * 109.47498 * 300.00323 * 7 6 5 40 40 H 1.09005 * 109.47067 * 60.00215 * 7 6 5 41 41 H 1.09004 * 109.47312 * 180.02562 * 7 6 5 42 42 H 1.09003 * 109.58474 * 353.41693 * 11 10 8 43 43 H 1.08997 * 109.59235 * 113.84262 * 11 10 8 44 44 H 1.09002 * 109.50076 * 65.31851 * 12 11 10 45 45 H 1.09001 * 109.50123 * 185.38025 * 12 11 10 46 46 H 1.09001 * 109.45491 * 301.34274 * 13 12 11 47 47 H 1.08995 * 109.45936 * 181.38510 * 13 12 11 48 48 H 1.08999 * 109.46858 * 93.68480 * 17 16 14 49 49 H 1.09006 * 109.46600 * 213.68256 * 17 16 14 50 50 H 1.08999 * 109.47010 * 333.68083 * 17 16 14 51 51 H 0.97001 * 120.00484 * 180.02562 * 21 20 18 52 52 H 1.08997 * 109.58262 * 6.58562 * 26 10 8 53 53 H 1.08997 * 109.70398 * 246.22996 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5655 1.4440 -0.1177 5 6 4.1717 0.7433 1.0998 6 6 3.8556 1.5489 2.3616 7 6 4.5660 0.9179 3.5608 8 6 3.9732 0.7144 -1.3718 9 8 4.4206 -0.4106 -1.3006 10 7 3.8408 1.3122 -2.5725 11 6 3.1912 2.6250 -2.6875 12 6 2.0669 2.5297 -3.7236 13 6 2.6350 1.9922 -5.0391 14 6 3.2055 0.5899 -4.8150 15 1 2.4204 -0.0667 -4.4402 16 7 3.7207 0.0630 -6.0812 17 6 4.7898 0.7719 -6.7888 18 6 3.2029 -1.0922 -6.6033 19 1 2.2226 -1.4298 -6.3006 20 6 3.9380 -1.8295 -7.5213 21 7 5.2087 -1.5516 -7.7222 22 14 3.1236 -3.2162 -8.4719 23 1 2.5510 -2.6819 -9.7336 24 1 4.1328 -4.2585 -8.7888 25 1 2.0397 -3.8105 -7.6490 26 6 4.3428 0.6632 -3.7913 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8900 32 1 1.7468 1.9315 0.9290 33 1 1.6098 1.9799 -0.8450 34 1 3.9254 2.4719 -0.1621 35 1 3.7483 -0.2568 1.1917 36 1 5.2523 0.6706 0.9764 37 1 4.2005 2.5749 2.2336 38 1 2.7794 1.5462 2.5342 39 1 4.2211 -0.1081 3.6889 40 1 5.6423 0.9206 3.3882 41 1 4.3405 1.4916 4.4598 42 1 2.7749 2.9126 -1.7219 43 1 3.9218 3.3675 -3.0084 44 1 1.2924 1.8549 -3.3591 45 1 1.6393 3.5187 -3.8886 46 1 3.4263 2.6545 -5.3903 47 1 1.8419 1.9467 -5.7854 48 1 5.7549 0.3560 -6.4994 49 1 4.6522 0.6569 -7.8640 50 1 4.7576 1.8301 -6.5295 51 1 5.7223 -2.0666 -8.3640 52 1 4.6864 -0.3436 -3.5541 53 1 5.1685 1.2435 -4.2032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752995849.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:19 Heat of formation + Delta-G solvation = -58.925822 kcal Electronic energy + Delta-G solvation = -27975.863637 eV Core-core repulsion = 24460.399068 eV Total energy + Delta-G solvation = -3515.464568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58594 -39.20140 -37.46731 -36.79155 -34.66565 -33.95335 -32.81067 -31.81183 -30.27876 -28.08719 -27.18368 -26.71734 -25.42203 -24.25571 -23.12333 -22.89968 -21.55333 -20.52301 -19.48298 -18.76754 -17.98334 -17.05775 -16.99717 -16.68268 -16.31774 -15.75711 -15.49077 -15.29927 -15.09547 -14.76849 -14.65789 -14.46882 -14.38220 -14.14760 -13.85532 -13.67238 -13.53093 -13.17608 -12.98098 -12.84524 -12.79320 -12.69845 -12.50302 -12.40437 -12.22554 -12.13293 -12.07055 -11.81885 -11.77965 -11.74366 -11.62680 -11.60331 -11.45085 -11.39330 -11.16500 -10.67169 -10.54281 -9.64516 -8.79543 -7.86455 -5.33885 1.42059 1.43393 1.52358 1.69646 2.04031 2.48154 3.26983 3.49257 3.61529 3.75019 3.89181 3.99954 4.05450 4.10124 4.13796 4.23606 4.25819 4.29887 4.37006 4.40495 4.55065 4.60866 4.64354 4.68855 4.73878 4.78511 4.81627 4.86932 4.88702 4.94162 4.98547 5.01282 5.04677 5.12923 5.14301 5.17675 5.24976 5.26424 5.33339 5.37143 5.40653 5.45137 5.48293 5.53004 5.55712 5.58099 5.62734 5.70203 6.29140 6.54720 7.11738 7.26797 7.83944 8.25680 9.16540 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.003490 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.464486 B = 8020.605023 C = 8119.524539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.097 4.097 5 C -0.101 4.101 6 C -0.115 4.115 7 C -0.155 4.155 8 C 0.508 3.492 9 O -0.597 6.597 10 N -0.607 5.607 11 C 0.097 3.903 12 C -0.122 4.122 13 C -0.122 4.122 14 C 0.169 3.831 15 H 0.039 0.961 16 N -0.610 5.610 17 C 0.182 3.818 18 C -0.265 4.265 19 H 0.066 0.934 20 C -0.054 4.054 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.273 1.273 26 C 0.114 3.886 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.021 0.979 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.121 0.879 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.063 0.937 47 H 0.055 0.945 48 H -0.005 1.005 49 H 0.021 0.979 50 H 0.035 0.965 51 H 0.248 0.752 52 H 0.038 0.962 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 15.261 20.045 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.145 4.145 4 C -0.118 4.118 5 C -0.139 4.139 6 C -0.153 4.153 7 C -0.212 4.212 8 C 0.298 3.702 9 O -0.478 6.478 10 N -0.340 5.340 11 C -0.023 4.023 12 C -0.160 4.160 13 C -0.161 4.161 14 C 0.061 3.939 15 H 0.057 0.943 16 N -0.333 5.333 17 C 0.037 3.963 18 C -0.395 4.395 19 H 0.083 0.917 20 C -0.248 4.248 21 N -0.585 5.585 22 Si 0.798 3.202 23 H -0.207 1.207 24 H -0.221 1.221 25 H -0.198 1.198 26 C -0.011 4.011 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.128 0.872 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.013 0.987 49 H 0.040 0.960 50 H 0.053 0.947 51 H 0.058 0.942 52 H 0.057 0.943 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.927 14.603 19.951 25.964 hybrid contribution 0.459 -1.775 -1.283 2.238 sum -7.468 12.827 18.668 23.849 Atomic orbital electron populations 1.21726 0.94396 1.01547 1.02649 1.21573 0.96925 0.97518 1.00633 1.21771 0.90818 0.96875 1.04990 1.21487 0.98891 1.01031 0.90412 1.21444 0.99578 0.99335 0.93550 1.21543 1.01620 0.99433 0.92660 1.21787 1.00258 1.00796 0.98398 1.21577 0.76680 0.86016 0.85895 1.90672 1.48324 1.21373 1.87389 1.48347 1.58483 1.21330 1.05822 1.22223 0.95352 0.82724 1.02048 1.21891 0.97491 1.03007 0.93651 1.21915 1.00253 0.95648 0.98333 1.20750 0.93433 0.94962 0.84714 0.94280 1.44183 1.42770 1.25751 1.20603 1.20486 0.89550 0.91294 0.94958 1.19545 0.98380 1.00360 1.21220 0.91666 1.25786 0.95749 1.00789 1.02526 1.70245 1.07258 1.43230 1.37792 0.85221 0.77355 0.78750 0.78855 1.20657 1.22124 1.19751 1.21900 0.97521 0.96645 0.85080 0.92634 0.93749 0.90545 0.95995 0.92010 0.87255 0.89875 0.85974 0.92898 0.93769 0.90397 0.90242 0.93521 0.93471 0.91271 0.86086 0.89922 0.92030 0.87151 0.91800 0.92622 0.98686 0.96018 0.94713 0.94250 0.94339 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.91 71.98 0.71 -1.85 16 2 C -0.13 -2.81 5.33 30.59 0.16 -2.65 16 3 C -0.11 -1.66 4.45 30.59 0.14 -1.53 16 4 C -0.10 -1.94 1.65 -11.54 -0.02 -1.95 16 5 C -0.10 -2.12 3.85 30.59 0.12 -2.00 16 6 C -0.12 -1.52 5.56 30.59 0.17 -1.35 16 7 C -0.16 -2.14 9.91 71.98 0.71 -1.43 16 8 C 0.51 16.28 5.55 87.66 0.49 16.76 16 9 O -0.60 -25.93 15.28 -3.03 -0.05 -25.97 16 10 N -0.61 -18.70 2.97 -818.91 -2.43 -21.14 16 11 C 0.10 1.91 5.73 86.36 0.49 2.40 16 12 C -0.12 -2.54 6.08 30.67 0.19 -2.36 16 13 C -0.12 -3.83 5.13 30.62 0.16 -3.67 16 14 C 0.17 7.16 2.74 45.07 0.12 7.28 16 15 H 0.04 1.81 7.86 -2.39 -0.02 1.79 16 16 N -0.61 -31.81 2.82 -702.33 -1.98 -33.79 16 17 C 0.18 9.23 7.91 127.77 1.01 10.24 16 18 C -0.26 -15.33 9.62 84.03 0.81 -14.52 16 19 H 0.07 3.72 7.80 -2.91 -0.02 3.70 16 20 C -0.05 -3.14 5.13 84.86 0.44 -2.71 16 21 N -0.94 -57.76 10.53 21.65 0.23 -57.53 16 22 Si 0.97 47.17 29.57 68.60 2.03 49.20 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 26 C 0.11 4.69 5.80 86.36 0.50 5.19 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.02 0.67 6.81 -2.38 -0.02 0.65 16 31 H 0.06 1.36 6.63 -2.38 -0.02 1.35 16 32 H 0.11 1.03 6.55 -2.38 -0.02 1.02 16 33 H 0.08 1.12 6.02 -2.39 -0.01 1.11 16 34 H 0.12 1.69 7.31 -2.39 -0.02 1.67 16 35 H 0.05 1.34 6.30 -2.39 -0.02 1.33 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.83 6.75 -2.39 -0.02 0.82 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.12 1.50 4.29 -2.39 -0.01 1.49 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.95 6.71 -2.39 -0.02 1.93 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H -0.01 -0.29 7.48 -2.39 -0.02 -0.31 16 49 H 0.02 1.18 7.08 -2.38 -0.02 1.16 16 50 H 0.03 1.47 6.46 -2.39 -0.02 1.45 16 51 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 52 H 0.04 1.96 7.00 -2.39 -0.02 1.94 16 53 H 0.06 2.32 7.51 -2.39 -0.02 2.30 16 Total: -1.00 -76.28 391.40 4.85 -71.44 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.85 Total: 11.93 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 6.20 Total: 5.86 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -4.19 Total: -112.45 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.28 4.85 -71.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752995849.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.510 kcal (2) G-P(sol) polarization free energy of solvation -76.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds