Wall clock time and date at job start Fri Apr 10 2020 22:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 C 1.53005 * 109.47324 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47009 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46826 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47141 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47066 * 54.99931 * 7 6 5 9 9 C 1.53000 * 109.47166 * 294.99927 * 7 6 5 10 10 C 1.50702 * 109.47159 * 174.99728 * 7 6 5 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 7 6 12 12 N 1.34777 * 119.99928 * 179.72352 * 10 7 6 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 7 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.08998 * 110.64093 * 308.15088 * 14 13 12 16 16 C 1.55160 * 110.72280 * 185.00158 * 14 13 12 17 17 C 1.54909 * 101.58059 * 206.13749 * 16 14 13 18 18 N 1.47423 * 104.83561 * 37.01012 * 17 16 14 19 19 C 1.36937 * 125.65168 * 155.91011 * 18 17 16 20 20 H 1.08000 * 119.99879 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99919 * 359.97162 * 19 18 17 22 22 N 1.31626 * 119.99789 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00125 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47305 * 60.00059 * 23 21 19 25 25 H 1.48499 * 109.47276 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47092 * 299.99942 * 23 21 19 27 27 C 1.47030 * 108.70306 * 335.87227 * 18 17 16 28 28 H 1.09001 * 109.47101 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46774 * 299.99713 * 1 2 3 30 30 H 1.09000 * 109.47753 * 59.99723 * 1 2 3 31 31 H 1.09000 * 109.46774 * 240.00287 * 2 1 3 32 32 H 1.09000 * 109.47753 * 120.00276 * 2 1 3 33 33 H 1.09000 * 109.47046 * 60.00454 * 3 2 1 34 34 H 1.08999 * 109.47456 * 300.00428 * 3 2 1 35 35 H 1.09000 * 109.46991 * 60.00049 * 4 3 2 36 36 H 1.08999 * 109.46900 * 300.00397 * 4 3 2 37 37 H 1.09000 * 109.47504 * 59.99996 * 5 4 3 38 38 H 1.09001 * 109.46481 * 299.99412 * 5 4 3 39 39 H 1.09005 * 109.47761 * 59.99504 * 6 5 4 40 40 H 1.09000 * 109.47436 * 299.99708 * 6 5 4 41 41 H 1.08994 * 109.47175 * 59.99981 * 9 7 6 42 42 H 1.09001 * 109.46739 * 179.97438 * 9 7 6 43 43 H 1.08996 * 109.46783 * 299.99412 * 9 7 6 44 44 H 0.97000 * 120.00317 * 0.28382 * 12 10 7 45 45 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 46 46 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 47 47 H 1.08993 * 111.00024 * 324.21044 * 16 14 13 48 48 H 1.08996 * 111.00126 * 88.02774 * 16 14 13 49 49 H 1.09002 * 110.36576 * 155.84749 * 17 16 14 50 50 H 1.09006 * 110.36840 * 278.17191 * 17 16 14 51 51 H 0.97004 * 119.99575 * 180.02562 * 22 21 19 52 52 H 1.09003 * 109.87704 * 241.64243 * 27 18 17 53 53 H 1.08990 * 109.88462 * 120.47550 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 -0.0013 7 6 6.1199 4.3275 -0.0013 8 1 5.6860 4.8663 0.8411 9 6 5.7141 5.0120 -1.3081 10 6 7.6219 4.3293 0.1213 11 8 8.2252 3.2801 0.2004 12 7 8.2954 5.4966 0.1370 13 6 9.7560 5.4982 0.2501 14 6 10.2664 6.9405 0.2452 15 1 9.8646 7.4874 -0.6077 16 6 11.8177 6.9739 0.2374 17 6 12.1026 8.3438 0.9022 18 7 11.0655 8.4823 1.9408 19 6 11.1603 9.2585 3.0649 20 1 10.3414 9.2927 3.7682 21 6 12.3090 10.0013 3.3006 22 7 13.3069 9.9598 2.4432 23 14 12.4388 11.0596 4.8343 24 1 12.3128 10.2017 6.0399 25 1 13.7551 11.7467 4.8518 26 1 11.3518 12.0713 4.8310 27 6 9.9120 7.6496 1.5694 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 3.7170 3.3984 0.8904 38 1 3.7162 3.3993 -0.8896 39 1 5.9726 2.3718 -0.8919 40 1 5.9740 2.3706 0.8880 41 1 4.6277 5.0107 -1.3968 42 1 6.0770 6.0397 -1.3078 43 1 6.1481 4.4732 -2.1504 44 1 7.8130 6.3358 0.0735 45 1 10.0488 5.0127 1.1810 46 1 10.1863 4.9572 -0.5927 47 1 12.2289 6.1581 0.8318 48 1 12.2039 6.9456 -0.7814 49 1 13.0946 8.3472 1.3539 50 1 12.0155 9.1464 0.1698 51 1 14.1098 10.4786 2.6081 52 1 9.0316 8.2769 1.4299 53 1 9.7232 6.9097 2.3470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753135011.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:25 Heat of formation + Delta-G solvation = -62.304880 kcal Electronic energy + Delta-G solvation = -25395.084089 eV Core-core repulsion = 21879.472993 eV Total energy + Delta-G solvation = -3515.611095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.96077 -37.78222 -37.02318 -35.13573 -34.62466 -32.62435 -31.95566 -29.79648 -28.50742 -27.95541 -25.81170 -25.27163 -23.83996 -22.64233 -21.34325 -21.09747 -20.34076 -19.85255 -19.32826 -17.09487 -16.69369 -16.34822 -16.03227 -15.58799 -15.18201 -14.70060 -14.47269 -14.35828 -14.08643 -13.82280 -13.66539 -13.35034 -13.02376 -12.86937 -12.59899 -12.50269 -12.33454 -12.01581 -11.87664 -11.75410 -11.69012 -11.49269 -11.36163 -11.32353 -11.08345 -10.96061 -10.91146 -10.79310 -10.70276 -10.66414 -10.39808 -10.15185 -10.01740 -9.86572 -9.65128 -9.44699 -8.91068 -8.65091 -6.83772 -5.65676 -3.07424 2.72225 3.27347 3.40107 3.44238 3.45647 4.31518 4.48226 4.52847 4.56041 4.70360 4.73283 4.74478 4.91565 5.06229 5.11629 5.12234 5.20949 5.26716 5.30306 5.38865 5.40699 5.43418 5.49640 5.52863 5.57197 5.59493 5.63493 5.69695 5.73736 5.76570 5.82390 5.85105 5.89563 5.94425 6.02096 6.09111 6.12340 6.14535 6.20441 6.35012 6.48868 6.55915 6.58972 6.73484 6.91241 7.50849 7.60351 7.61926 7.85298 8.31117 8.36225 9.21794 9.82806 10.47759 11.38178 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.001879 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.955554 B =14894.593484 C =15558.488019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.099 4.099 7 C -0.112 4.112 8 H 0.096 0.904 9 C -0.145 4.145 10 C 0.513 3.487 11 O -0.546 6.546 12 N -0.725 5.725 13 C 0.132 3.868 14 C -0.114 4.114 15 H 0.075 0.925 16 C -0.136 4.136 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.224 4.224 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.142 3.858 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.400 0.600 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.107 0.893 50 H 0.012 0.988 51 H 0.252 0.748 52 H 0.017 0.983 53 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.953 -14.888 -8.752 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.137 4.137 7 C -0.133 4.133 8 H 0.114 0.886 9 C -0.202 4.202 10 C 0.299 3.701 11 O -0.423 6.423 12 N -0.376 5.376 13 C 0.008 3.992 14 C -0.133 4.133 15 H 0.094 0.906 16 C -0.175 4.175 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.352 4.352 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.212 1.212 27 C 0.016 3.984 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.235 0.765 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.125 0.875 50 H 0.030 0.970 51 H 0.063 0.937 52 H 0.035 0.965 53 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -20.341 -15.487 -8.583 26.968 hybrid contribution -0.175 1.107 0.748 1.347 sum -20.516 -14.380 -7.836 26.251 Atomic orbital electron populations 1.21782 0.96026 1.01503 1.01759 1.21547 0.95733 0.97125 1.02004 1.21633 0.95586 0.96605 1.01974 1.21605 0.95073 0.96920 1.02229 1.21676 0.95211 0.96846 1.02113 1.21396 0.94590 0.94232 1.03516 1.21342 0.92182 0.99305 1.00518 0.88558 1.21825 1.02185 1.00329 0.95910 1.20654 0.89867 0.83678 0.75862 1.90686 1.70433 1.31499 1.49719 1.46125 1.08367 1.08619 1.74497 1.21448 0.78696 0.97129 1.01901 1.22442 0.98119 0.93675 0.99113 0.90644 1.23007 0.92659 1.01642 1.00170 1.21933 0.96624 0.89369 0.89363 1.44500 1.13382 1.51925 1.23249 1.19032 1.00555 1.18449 0.97204 0.90604 1.24790 0.96544 1.00504 0.98828 1.69792 1.06499 1.44826 1.35970 0.86147 0.76864 0.80054 0.82393 1.21168 1.21534 1.21244 1.21328 0.91359 0.92961 0.92749 0.92897 0.92793 0.92815 0.92113 0.92075 0.92067 0.92117 0.91999 0.91956 0.91973 0.91740 0.91381 0.91119 0.91285 0.92090 0.92117 0.76537 0.91345 0.91781 0.91857 0.92154 0.87543 0.97027 0.93682 0.96469 0.95838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.75 5.93 -26.74 -0.16 -0.91 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.88 16 4 C -0.12 -0.84 5.21 -26.73 -0.14 -0.98 16 5 C -0.12 -0.87 4.97 -26.73 -0.13 -1.00 16 6 C -0.10 -0.93 4.03 -26.73 -0.11 -1.04 16 7 C -0.11 -1.06 2.73 -91.77 -0.25 -1.31 16 8 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 9 C -0.14 -1.10 8.84 37.16 0.33 -0.77 16 10 C 0.51 6.85 7.16 -10.98 -0.08 6.77 16 11 O -0.55 -9.42 15.92 5.55 0.09 -9.33 16 12 N -0.73 -9.27 5.36 -60.29 -0.32 -9.60 16 13 C 0.13 1.97 5.02 -4.04 -0.02 1.95 16 14 C -0.11 -1.90 2.96 -88.78 -0.26 -2.16 16 15 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 16 C -0.14 -2.53 6.53 -24.58 -0.16 -2.69 16 17 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 18 N -0.60 -15.48 3.39 -170.06 -0.58 -16.05 16 19 C -0.22 -6.27 10.27 -15.06 -0.15 -6.43 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 22 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.14 2.89 6.75 -3.06 -0.02 2.87 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.77 7.96 -51.93 -0.41 0.36 16 41 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 42 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.40 4.30 7.88 -40.82 -0.32 3.98 16 45 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.18 8.05 -51.93 -0.42 0.77 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.11 2.90 5.88 -51.93 -0.31 2.60 16 50 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 52 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 53 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 LS Contribution 411.30 15.07 6.20 6.20 Total: -1.00 -31.69 411.30 -10.62 -42.31 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -10.50 Total: -0.48 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.04 Total: -3.79 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.34 Total: -51.98 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.69 -10.62 -42.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753135011.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.994 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds