Wall clock time and date at job start Fri Apr 10 2020 22:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47098 * 2 1 4 4 C 1.52997 * 109.47379 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47379 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47098 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 C 1.52999 * 109.47001 * 295.13027 * 13 12 11 15 15 N 1.46500 * 109.46759 * 179.97438 * 14 13 12 16 16 C 1.36943 * 120.00115 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00166 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00062 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47350 * 90.00093 * 20 18 16 22 22 H 1.48499 * 109.46916 * 210.00488 * 20 18 16 23 23 H 1.48504 * 109.47003 * 330.00298 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 25 25 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 26 26 H 1.09000 * 109.47351 * 300.00216 * 1 2 3 27 27 H 1.09001 * 109.47188 * 59.99830 * 1 2 3 28 28 H 1.08998 * 109.47368 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46646 * 240.00027 * 2 1 3 30 30 H 1.08994 * 109.46972 * 119.99864 * 2 1 3 31 31 H 1.09000 * 109.47196 * 59.99689 * 3 2 1 32 32 H 1.09001 * 109.47240 * 300.00138 * 3 2 1 33 33 H 1.09005 * 109.46848 * 59.99483 * 4 3 2 34 34 H 1.09001 * 109.46983 * 300.00216 * 4 3 2 35 35 H 1.08996 * 109.46993 * 60.00073 * 5 4 3 36 36 H 1.09001 * 109.47240 * 300.00058 * 5 4 3 37 37 H 1.09001 * 109.46646 * 60.00027 * 6 5 4 38 38 H 1.09001 * 109.47188 * 300.00170 * 6 5 4 39 39 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 40 40 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 41 41 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 42 42 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 43 43 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 44 44 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 45 45 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 46 46 H 1.08991 * 109.47450 * 299.99495 * 14 13 12 47 47 H 1.08999 * 109.47142 * 60.00302 * 14 13 12 48 48 H 0.97005 * 120.00425 * 359.97438 * 15 14 13 49 49 H 0.96996 * 119.99916 * 180.02562 * 19 18 16 50 50 H 1.08994 * 109.50232 * 301.42239 * 24 12 11 51 51 H 1.09007 * 109.52628 * 181.33900 * 24 12 11 52 52 H 1.08994 * 109.58580 * 353.38021 * 25 9 7 53 53 H 1.09006 * 109.57831 * 113.65514 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 6 6.1123 4.3059 0.0013 8 8 5.3241 5.2276 0.0026 9 7 7.4374 4.5522 0.0010 10 6 7.9423 5.9319 0.0016 11 6 8.9198 6.1018 1.1689 12 6 10.0118 5.0297 1.0707 13 6 11.0103 5.2143 2.2152 14 6 11.7350 6.5515 2.0490 15 7 12.6906 6.7285 3.1452 16 6 13.4592 7.8602 3.2076 17 1 13.3612 8.6220 2.4484 18 6 14.3643 8.0281 4.2465 19 7 14.4842 7.0994 5.1715 20 14 15.4133 9.5715 4.3312 21 1 14.7004 10.6121 5.1147 22 1 16.7065 9.2555 4.9891 23 1 15.6668 10.0737 2.9568 24 6 9.3776 3.6403 1.1665 25 6 8.4044 3.4460 -0.0012 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 3.7170 3.3983 0.8904 36 1 3.7163 3.3995 -0.8895 37 1 5.9733 2.3716 -0.8902 38 1 5.9734 2.3708 0.8897 39 1 8.4567 6.1332 -0.9380 40 1 7.1098 6.6256 0.1183 41 1 9.3725 7.0923 1.1231 42 1 8.3840 5.9894 2.1114 43 1 10.5305 5.1270 0.1170 44 1 10.4783 5.2051 3.1665 45 1 11.7373 4.4024 2.1976 46 1 12.2670 6.5608 1.0978 47 1 11.0080 7.3634 2.0667 48 1 12.7785 6.0444 3.8273 49 1 15.1164 7.2169 5.8976 50 1 8.8376 3.5510 2.1091 51 1 10.1573 2.8799 1.1204 52 1 7.8769 2.4994 0.1161 53 1 8.9546 3.4436 -0.9422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753576004.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:36 Heat of formation + Delta-G solvation = -74.958882 kcal Electronic energy + Delta-G solvation = -25313.105215 eV Core-core repulsion = 21796.945401 eV Total energy + Delta-G solvation = -3516.159814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.40249 -38.08967 -36.70439 -35.32533 -33.82431 -33.47208 -31.36611 -31.17313 -29.58383 -28.31388 -25.57443 -24.79616 -23.35239 -22.87775 -21.71381 -21.35987 -21.09131 -20.13788 -18.96724 -17.28055 -16.95587 -16.51982 -16.00550 -15.69043 -14.78833 -14.70887 -14.61228 -14.40079 -14.08388 -13.92006 -13.76300 -13.66379 -13.24182 -13.17566 -13.01563 -12.77742 -12.67616 -12.58555 -12.15823 -11.80326 -11.78877 -11.38802 -11.30112 -11.22327 -11.14241 -11.08962 -10.98990 -10.94272 -10.83215 -10.75825 -10.57634 -10.31930 -10.17444 -9.99625 -9.79460 -9.65188 -8.84307 -8.75392 -6.88986 -5.74670 -3.03008 2.49213 2.83898 3.44807 3.49698 3.51466 4.18209 4.40591 4.50575 4.56131 4.60494 4.67471 4.73140 4.79805 4.82770 4.85335 5.00854 5.03497 5.07733 5.18561 5.21974 5.28766 5.34168 5.38666 5.40920 5.46802 5.56704 5.57372 5.61294 5.61937 5.69495 5.71596 5.74665 5.74908 5.84008 5.89256 5.91588 5.97942 5.99490 6.07389 6.11412 6.20118 6.34060 6.40115 6.47268 6.49007 6.89177 6.94185 7.25882 7.71608 8.03886 8.44722 9.55475 10.14801 10.49024 11.48434 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.035002 B = 0.001731 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.769579 B =16167.833294 C =16377.665243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.105 4.105 6 C -0.140 4.140 7 C 0.512 3.488 8 O -0.546 6.546 9 N -0.612 5.612 10 C 0.110 3.890 11 C -0.131 4.131 12 C -0.082 4.082 13 C -0.120 4.120 14 C 0.152 3.848 15 N -0.735 5.735 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.130 4.130 25 C 0.107 3.893 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.067 0.933 51 H 0.077 0.923 52 H 0.083 0.917 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.078 -16.059 -13.451 31.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.143 4.143 6 C -0.180 4.180 7 C 0.301 3.699 8 O -0.423 6.423 9 N -0.345 5.345 10 C -0.012 4.012 11 C -0.169 4.169 12 C -0.102 4.102 13 C -0.158 4.158 14 C 0.025 3.975 15 N -0.379 5.379 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.168 4.168 25 C -0.016 4.016 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.037 0.963 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.095 0.905 52 H 0.101 0.899 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.418 -15.403 -13.500 31.112 hybrid contribution 0.882 0.581 0.400 1.130 sum -22.536 -14.822 -13.101 29.986 Atomic orbital electron populations 1.21784 0.95984 1.01510 1.01849 1.21541 0.95822 0.97006 1.01926 1.21618 0.95302 0.96650 1.02291 1.21626 0.95594 0.96527 1.02035 1.21362 0.92734 0.96561 1.03602 1.21726 0.98020 0.94071 1.04155 1.20748 0.81716 0.91774 0.75655 1.90685 1.54823 1.46666 1.50150 1.48197 1.05512 1.07679 1.73149 1.21656 0.98173 0.82650 0.98752 1.22096 0.96225 1.00314 0.98222 1.21136 0.95541 0.93644 0.99831 1.21755 0.97378 0.99118 0.97571 1.20700 0.91387 0.93606 0.91847 1.42388 1.44655 1.22862 1.27963 1.19250 1.13925 0.96645 1.07183 0.91234 1.24739 1.00291 0.98387 0.97673 1.69662 1.39705 1.34127 1.14857 0.86189 0.79840 0.82746 0.77433 1.21727 1.21761 1.20768 1.21996 0.98470 0.98131 0.98251 1.21811 0.91087 0.89352 0.99375 0.92740 0.92789 0.92877 0.92131 0.92077 0.91901 0.91966 0.91991 0.91922 0.91212 0.91288 0.89057 0.88914 0.91604 0.89203 0.89773 0.91581 0.91020 0.92069 0.91943 0.96637 0.96264 0.78382 0.93561 0.91424 0.90468 0.89871 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.13 -0.68 5.93 -26.73 -0.16 -0.84 16 3 C -0.12 -0.74 5.21 -26.73 -0.14 -0.88 16 4 C -0.12 -0.72 5.21 -26.73 -0.14 -0.86 16 5 C -0.10 -0.83 4.50 -26.73 -0.12 -0.95 16 6 C -0.14 -1.06 4.05 -27.88 -0.11 -1.17 16 7 C 0.51 5.86 7.70 -10.99 -0.08 5.77 16 8 O -0.55 -8.33 15.39 5.56 0.09 -8.24 16 9 N -0.61 -6.42 2.97 -172.74 -0.51 -6.93 16 10 C 0.11 1.25 6.42 -3.71 -0.02 1.23 16 11 C -0.13 -1.60 5.16 -26.45 -0.14 -1.74 16 12 C -0.08 -0.99 2.15 -90.42 -0.19 -1.18 16 13 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 14 C 0.15 3.05 6.02 -4.04 -0.02 3.03 16 15 N -0.73 -19.02 5.60 -59.91 -0.34 -19.36 16 16 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 20 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 C -0.13 -1.23 5.37 -26.59 -0.14 -1.38 16 25 C 0.11 0.85 6.34 -3.68 -0.02 0.82 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.09 0.53 7.94 -51.93 -0.41 0.11 16 38 H 0.09 0.58 7.69 -51.93 -0.40 0.18 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.15 7.00 -51.93 -0.36 0.79 16 41 H 0.08 1.10 6.52 -51.93 -0.34 0.76 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.39 6.53 -51.93 -0.34 0.05 16 48 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 49 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 52 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 53 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 410.36 15.07 6.18 6.18 Total: -1.00 -33.07 410.36 -10.66 -43.73 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -10.47 Total: 3.00 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.31 Total: -8.10 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.12 Total: -54.22 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.07 -10.66 -43.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753576004.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.232 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds