Wall clock time and date at job start Fri Apr 10 2020 22:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47098 * 2 1 4 4 C 1.52997 * 109.47379 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47379 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47098 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 C 1.52999 * 109.47001 * 295.13027 * 13 12 11 15 15 N 1.46500 * 109.46759 * 179.97438 * 14 13 12 16 16 C 1.36943 * 120.00115 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00166 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00062 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47350 * 90.00093 * 20 18 16 22 22 H 1.48499 * 109.46916 * 210.00488 * 20 18 16 23 23 H 1.48504 * 109.47003 * 330.00298 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 25 25 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 26 26 H 1.09000 * 109.47351 * 300.00216 * 1 2 3 27 27 H 1.09001 * 109.47188 * 59.99830 * 1 2 3 28 28 H 1.08998 * 109.47368 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46646 * 240.00027 * 2 1 3 30 30 H 1.08994 * 109.46972 * 119.99864 * 2 1 3 31 31 H 1.09000 * 109.47196 * 59.99689 * 3 2 1 32 32 H 1.09001 * 109.47240 * 300.00138 * 3 2 1 33 33 H 1.09005 * 109.46848 * 59.99483 * 4 3 2 34 34 H 1.09001 * 109.46983 * 300.00216 * 4 3 2 35 35 H 1.08996 * 109.46993 * 60.00073 * 5 4 3 36 36 H 1.09001 * 109.47240 * 300.00058 * 5 4 3 37 37 H 1.09001 * 109.46646 * 60.00027 * 6 5 4 38 38 H 1.09001 * 109.47188 * 300.00170 * 6 5 4 39 39 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 40 40 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 41 41 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 42 42 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 43 43 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 44 44 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 45 45 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 46 46 H 1.08991 * 109.47450 * 299.99495 * 14 13 12 47 47 H 1.08999 * 109.47142 * 60.00302 * 14 13 12 48 48 H 0.97005 * 120.00425 * 359.97438 * 15 14 13 49 49 H 0.96996 * 119.99916 * 180.02562 * 19 18 16 50 50 H 1.08994 * 109.50232 * 301.42239 * 24 12 11 51 51 H 1.09007 * 109.52628 * 181.33900 * 24 12 11 52 52 H 1.08994 * 109.58580 * 353.38021 * 25 9 7 53 53 H 1.09006 * 109.57831 * 113.65514 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 6 6.1123 4.3059 0.0013 8 8 5.3241 5.2276 0.0026 9 7 7.4374 4.5522 0.0010 10 6 7.9423 5.9319 0.0016 11 6 8.9198 6.1018 1.1689 12 6 10.0118 5.0297 1.0707 13 6 11.0103 5.2143 2.2152 14 6 11.7350 6.5515 2.0490 15 7 12.6906 6.7285 3.1452 16 6 13.4592 7.8602 3.2076 17 1 13.3612 8.6220 2.4484 18 6 14.3643 8.0281 4.2465 19 7 14.4842 7.0994 5.1715 20 14 15.4133 9.5715 4.3312 21 1 14.7004 10.6121 5.1147 22 1 16.7065 9.2555 4.9891 23 1 15.6668 10.0737 2.9568 24 6 9.3776 3.6403 1.1665 25 6 8.4044 3.4460 -0.0012 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 3.7170 3.3983 0.8904 36 1 3.7163 3.3995 -0.8895 37 1 5.9733 2.3716 -0.8902 38 1 5.9734 2.3708 0.8897 39 1 8.4567 6.1332 -0.9380 40 1 7.1098 6.6256 0.1183 41 1 9.3725 7.0923 1.1231 42 1 8.3840 5.9894 2.1114 43 1 10.5305 5.1270 0.1170 44 1 10.4783 5.2051 3.1665 45 1 11.7373 4.4024 2.1976 46 1 12.2670 6.5608 1.0978 47 1 11.0080 7.3634 2.0667 48 1 12.7785 6.0444 3.8273 49 1 15.1164 7.2169 5.8976 50 1 8.8376 3.5510 2.1091 51 1 10.1573 2.8799 1.1204 52 1 7.8769 2.4994 0.1161 53 1 8.9546 3.4436 -0.9422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753576004.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:35 Heat of formation + Delta-G solvation = -93.104115 kcal Electronic energy + Delta-G solvation = -25313.892051 eV Core-core repulsion = 21796.945401 eV Total energy + Delta-G solvation = -3516.946650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.26670 -39.07350 -37.26367 -36.86600 -35.05434 -34.31125 -32.96676 -32.17249 -30.40679 -29.56478 -26.72244 -25.80689 -24.65701 -23.95688 -22.65801 -22.15204 -21.83443 -21.16410 -19.79082 -19.13870 -18.04291 -17.12296 -16.84806 -16.69320 -16.36235 -15.84926 -15.50535 -15.36787 -15.23337 -15.02520 -14.79232 -14.66354 -14.29107 -14.25255 -13.93614 -13.78256 -13.37802 -13.36254 -13.06123 -12.98420 -12.84581 -12.53417 -12.32933 -12.30328 -12.23597 -12.17048 -12.10777 -11.96200 -11.77073 -11.63212 -11.59415 -11.47883 -11.31678 -11.27969 -11.23529 -10.92303 -10.68943 -9.62933 -9.00243 -7.96722 -5.25702 1.46224 1.48271 1.56753 1.64774 2.05414 2.55128 3.36915 3.52149 3.71443 3.80210 3.84069 3.88165 4.01989 4.13067 4.18631 4.23349 4.25461 4.34197 4.35646 4.41592 4.51599 4.55411 4.57493 4.61428 4.69604 4.74484 4.76662 4.84165 4.88396 4.89302 4.91440 4.98455 5.00872 5.07224 5.10893 5.13907 5.15715 5.18504 5.24766 5.28465 5.31405 5.40945 5.43054 5.48222 5.50907 5.56169 5.56771 5.61569 6.26294 6.45850 7.19664 7.31911 8.09202 8.31796 9.26991 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.035002 B = 0.001731 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.769579 B =16167.833294 C =16377.665243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.112 4.112 5 C -0.102 4.102 6 C -0.132 4.132 7 C 0.504 3.496 8 O -0.595 6.595 9 N -0.612 5.612 10 C 0.114 3.886 11 C -0.125 4.125 12 C -0.074 4.074 13 C -0.107 4.107 14 C 0.149 3.851 15 N -0.749 5.749 16 C -0.249 4.249 17 H 0.074 0.926 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.269 1.269 24 C -0.126 4.126 25 C 0.106 3.894 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.373 0.627 49 H 0.252 0.748 50 H 0.060 0.940 51 H 0.095 0.905 52 H 0.115 0.885 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.946 -17.767 -14.926 32.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.160 4.160 4 C -0.150 4.150 5 C -0.140 4.140 6 C -0.172 4.172 7 C 0.294 3.706 8 O -0.476 6.476 9 N -0.344 5.344 10 C -0.009 4.009 11 C -0.163 4.163 12 C -0.094 4.094 13 C -0.145 4.145 14 C 0.023 3.977 15 N -0.392 5.392 16 C -0.381 4.381 17 H 0.092 0.908 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.194 1.194 24 C -0.164 4.164 25 C -0.015 4.015 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.113 0.887 52 H 0.133 0.867 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.291 -17.128 -15.014 32.577 hybrid contribution 0.802 1.139 0.835 1.625 sum -22.489 -15.989 -14.179 31.023 Atomic orbital electron populations 1.21803 0.96023 1.01845 1.01651 1.21527 0.95827 0.96396 1.02330 1.21623 0.95690 0.97099 1.01616 1.21570 0.95214 0.95105 1.03085 1.21305 0.93362 0.97542 1.01792 1.21777 0.97364 0.91602 1.06407 1.21510 0.81554 0.92953 0.74555 1.90666 1.56064 1.48448 1.52418 1.48332 1.05900 1.07835 1.72382 1.21510 0.97198 0.83425 0.98797 1.21999 0.96421 0.99937 0.97964 1.21079 0.94492 0.95313 0.98471 1.21630 0.97699 0.96489 0.98706 1.20901 0.90551 0.96152 0.90111 1.42642 1.45472 1.21965 1.29127 1.19665 1.13934 0.97446 1.07059 0.90792 1.25587 1.01973 1.01612 0.97607 1.69816 1.40606 1.36116 1.15523 0.85128 0.77755 0.78971 0.77849 1.21434 1.21917 1.19363 1.21962 0.99133 0.96513 0.98796 1.22039 0.90551 0.89584 0.99346 0.93081 0.92903 0.92267 0.91533 0.91784 0.92825 0.92516 0.90606 0.91029 0.93406 0.92899 0.86178 0.86823 0.90240 0.91259 0.91066 0.93116 0.90043 0.93170 0.91770 0.96304 0.96344 0.79559 0.93956 0.92125 0.88694 0.86741 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.15 5.93 30.60 0.18 -0.97 16 3 C -0.12 -1.38 5.21 30.59 0.16 -1.22 16 4 C -0.11 -1.12 5.21 30.59 0.16 -0.96 16 5 C -0.10 -1.52 4.50 30.60 0.14 -1.38 16 6 C -0.13 -1.65 4.05 29.85 0.12 -1.53 16 7 C 0.50 10.93 7.70 87.66 0.67 11.61 16 8 O -0.59 -18.56 15.39 -3.03 -0.05 -18.61 16 9 N -0.61 -11.69 2.97 -818.81 -2.43 -14.12 16 10 C 0.11 2.52 6.42 86.36 0.55 3.08 16 11 C -0.12 -3.03 5.16 30.78 0.16 -2.87 16 12 C -0.07 -1.66 2.15 -10.66 -0.02 -1.68 16 13 C -0.11 -3.28 4.80 30.60 0.15 -3.13 16 14 C 0.15 5.96 6.02 86.38 0.52 6.48 16 15 N -0.75 -39.15 5.60 -343.46 -1.92 -41.07 16 16 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 17 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 18 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 19 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 20 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C -0.13 -2.01 5.37 30.69 0.16 -1.85 16 25 C 0.11 1.28 6.34 86.38 0.55 1.83 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.12 0.86 7.94 -2.39 -0.02 0.84 16 38 H 0.11 1.00 7.69 -2.39 -0.02 0.98 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.84 7.00 -2.39 -0.02 1.82 16 41 H 0.07 1.88 6.52 -2.39 -0.02 1.87 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.02 0.75 6.53 -2.39 -0.02 0.74 16 48 H 0.37 20.60 7.67 -92.70 -0.71 19.89 16 49 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 50 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 52 H 0.11 0.73 5.93 -2.39 -0.01 0.71 16 53 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -72.91 410.36 3.56 -69.35 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.13 Total: 26.40 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.52 Total: -10.75 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.08 Total: -115.09 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.05 Total: -18.61 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -72.91 3.56 -69.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753576004.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.750 kcal (2) G-P(sol) polarization free energy of solvation -72.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds