Wall clock time and date at job start Fri Apr 10 2020 22:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47050 * 2 1 4 4 C 1.52997 * 109.46962 * 174.88308 * 3 2 1 5 5 C 1.50696 * 112.85318 * 54.52369 * 4 3 2 6 6 O 1.21278 * 120.00415 * 245.40767 * 5 4 3 7 7 N 1.34784 * 119.99976 * 65.40225 * 5 4 3 8 8 C 1.46494 * 119.99985 * 175.02858 * 7 5 4 9 9 H 1.09005 * 109.47384 * 328.61682 * 8 7 5 10 10 C 1.52998 * 109.47069 * 208.61913 * 8 7 5 11 11 N 1.46497 * 109.47089 * 54.99887 * 10 8 7 12 12 C 1.36942 * 119.99987 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00249 * 0.02562 * 12 11 10 14 14 C 1.38813 * 120.00006 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99802 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00082 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46987 * 89.99999 * 16 14 12 18 18 H 1.48503 * 109.47140 * 210.00473 * 16 14 12 19 19 H 1.48498 * 109.47084 * 330.00084 * 16 14 12 20 20 C 1.52997 * 109.47595 * 88.61731 * 8 7 5 21 21 C 1.52995 * 109.47604 * 185.74080 * 20 8 7 22 22 C 1.53001 * 109.47143 * 65.63170 * 21 20 8 23 23 C 1.53003 * 109.47234 * 185.63459 * 21 20 8 24 24 C 1.53787 * 113.61599 * 283.21667 * 4 3 2 25 25 C 1.53783 * 87.08103 * 220.01887 * 24 4 3 26 26 C 1.53782 * 113.61360 * 185.72113 * 4 3 2 27 27 H 1.08999 * 109.47316 * 300.00290 * 1 2 3 28 28 H 1.08994 * 109.47265 * 60.00075 * 1 2 3 29 29 H 1.09004 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46551 * 119.99680 * 2 1 3 31 31 H 1.08997 * 109.46816 * 239.99568 * 2 1 3 32 32 H 1.09002 * 109.47110 * 294.88217 * 3 2 1 33 33 H 1.09003 * 109.47240 * 54.88325 * 3 2 1 34 34 H 0.96999 * 119.99846 * 355.02418 * 7 5 4 35 35 H 1.09005 * 109.47684 * 175.00007 * 10 8 7 36 36 H 1.09003 * 109.47327 * 294.99762 * 10 8 7 37 37 H 0.97000 * 120.00085 * 0.02562 * 11 10 8 38 38 H 0.97001 * 119.99486 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47175 * 305.74310 * 20 8 7 40 40 H 1.09003 * 109.46622 * 65.73834 * 20 8 7 41 41 H 1.08999 * 109.47251 * 305.63259 * 21 20 8 42 42 H 1.08998 * 109.47107 * 184.38732 * 22 21 20 43 43 H 1.09004 * 109.47231 * 304.39146 * 22 21 20 44 44 H 1.08998 * 109.46992 * 64.38806 * 22 21 20 45 45 H 1.09000 * 109.47037 * 59.99840 * 23 21 20 46 46 H 1.09004 * 109.46660 * 180.02562 * 23 21 20 47 47 H 1.08999 * 109.46838 * 300.00053 * 23 21 20 48 48 H 1.08999 * 113.61365 * 334.56868 * 24 4 3 49 49 H 1.08997 * 113.61232 * 105.47138 * 24 4 3 50 50 H 1.08997 * 113.61604 * 270.88200 * 25 24 4 51 51 H 1.08998 * 113.60902 * 139.97800 * 25 24 4 52 52 H 1.09004 * 113.61543 * 254.52612 * 26 4 3 53 53 H 1.09002 * 113.61601 * 25.43237 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4443 0.1287 5 6 4.2418 0.6059 -0.9245 6 8 4.8566 -0.3894 -0.6046 7 7 4.1642 0.9619 -2.2222 8 6 4.9114 0.2107 -3.2338 9 1 5.8312 -0.1751 -2.7942 10 6 5.2539 1.1338 -4.4049 11 7 5.9683 2.3113 -3.9057 12 6 6.3789 3.2838 -4.7780 13 1 6.1757 3.1830 -5.8339 14 6 7.0554 4.3998 -4.3050 15 7 7.3027 4.5230 -3.0181 16 14 7.6148 5.7268 -5.4948 17 1 6.5439 6.7452 -5.6396 18 1 8.8455 6.3733 -4.9723 19 1 7.9000 5.1167 -6.8182 20 6 4.0583 -0.9557 -3.7364 21 6 4.8880 -1.8229 -4.6852 22 6 6.0302 -2.4803 -3.9079 23 6 3.9972 -2.9063 -5.2965 24 6 4.0627 1.1639 1.5563 25 6 5.1321 2.2413 1.3105 26 6 4.1683 2.8507 0.2787 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.7534 1.9291 -0.9323 33 1 1.6038 1.9821 0.8406 34 1 3.6136 1.7156 -2.4862 35 1 5.8849 0.6002 -5.1157 36 1 4.3353 1.4489 -4.8999 37 1 6.1506 2.4021 -2.9573 38 1 7.7751 5.3030 -2.6875 39 1 3.7292 -1.5569 -2.8889 40 1 3.1882 -0.5675 -4.2661 41 1 5.3002 -1.2005 -5.4795 42 1 6.6666 -3.0351 -4.5972 43 1 6.6194 -1.7113 -3.4082 44 1 5.6182 -3.1626 -3.1645 45 1 3.1836 -2.4379 -5.8503 46 1 4.5886 -3.5243 -5.9721 47 1 3.5851 -3.5286 -4.5022 48 1 3.3432 1.4313 2.3302 49 1 4.4734 0.1627 1.6866 50 1 6.0514 1.8522 0.8728 51 1 5.3114 2.8832 2.1729 52 1 4.6645 3.2113 -0.6224 53 1 3.4778 3.5794 0.7033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753738336.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:38 Heat of formation + Delta-G solvation = -61.554562 kcal Electronic energy + Delta-G solvation = -27990.189768 eV Core-core repulsion = 24474.611209 eV Total energy + Delta-G solvation = -3515.578559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.82575 -39.43351 -37.87595 -36.35156 -35.31220 -34.97562 -32.93630 -30.73408 -29.25748 -28.03426 -27.21135 -26.55720 -25.28296 -24.48576 -23.37259 -22.26504 -21.69254 -20.65150 -20.10097 -19.06440 -17.47652 -17.34963 -16.87792 -16.51733 -16.01895 -15.99854 -15.69752 -15.44384 -15.07750 -14.91281 -14.65880 -14.51137 -14.26989 -14.02705 -13.73602 -13.40071 -13.27574 -13.20283 -13.16200 -13.14260 -12.93616 -12.77259 -12.64411 -12.38890 -12.23135 -12.04622 -12.03222 -11.89225 -11.81825 -11.77278 -11.61313 -11.54503 -11.36082 -11.08243 -10.97543 -10.95451 -10.57788 -9.92351 -8.99191 -7.92617 -5.22116 1.48063 1.49168 1.57418 1.70456 2.26260 2.56463 3.41051 3.45295 3.58818 3.69020 3.78756 3.86968 3.93151 4.02402 4.09248 4.17443 4.18995 4.20111 4.29964 4.38840 4.45518 4.57704 4.74230 4.75485 4.79966 4.81285 4.81658 4.88413 4.90315 4.92750 4.93572 4.99082 5.02193 5.04279 5.05042 5.11044 5.16428 5.16920 5.22654 5.27879 5.33656 5.39562 5.46492 5.47793 5.49466 5.51316 5.53002 5.64661 6.27342 6.64075 7.32735 7.34948 8.07965 8.32809 9.29976 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.005295 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.771267 B = 5286.576268 C = 7320.707998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.104 4.104 5 C 0.541 3.459 6 O -0.582 6.582 7 N -0.706 5.706 8 C 0.145 3.855 9 H 0.060 0.940 10 C 0.147 3.853 11 N -0.740 5.740 12 C -0.244 4.244 13 H 0.077 0.923 14 C -0.069 4.069 15 N -0.964 5.964 16 Si 0.970 3.030 17 H -0.285 1.285 18 H -0.299 1.299 19 H -0.271 1.271 20 C -0.105 4.105 21 C -0.097 4.097 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.105 4.105 25 C -0.146 4.146 26 C -0.121 4.121 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.405 0.595 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.373 0.627 38 H 0.249 0.751 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.117 0.883 49 H 0.059 0.941 50 H 0.045 0.955 51 H 0.087 0.913 52 H 0.047 0.953 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.364 -9.982 4.813 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.129 4.129 4 C -0.107 4.107 5 C 0.328 3.672 6 O -0.462 6.462 7 N -0.355 5.355 8 C 0.040 3.960 9 H 0.078 0.922 10 C 0.020 3.980 11 N -0.384 5.384 12 C -0.376 4.376 13 H 0.094 0.906 14 C -0.262 4.262 15 N -0.614 5.614 16 Si 0.800 3.200 17 H -0.212 1.212 18 H -0.226 1.226 19 H -0.196 1.196 20 C -0.144 4.144 21 C -0.116 4.116 22 C -0.202 4.202 23 C -0.195 4.195 24 C -0.142 4.142 25 C -0.184 4.184 26 C -0.159 4.159 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.240 0.760 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.206 0.794 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.135 0.865 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.105 0.895 52 H 0.066 0.934 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.888 -10.616 4.836 18.138 hybrid contribution 0.914 1.214 -0.400 1.571 sum -12.974 -9.403 4.436 16.626 Atomic orbital electron populations 1.21721 0.94100 1.01953 1.02455 1.21473 0.97045 0.96319 1.01153 1.21550 0.89840 0.97616 1.03862 1.22008 0.97283 0.96431 0.95026 1.20354 0.79071 0.84408 0.83359 1.90616 1.44863 1.28604 1.82121 1.45878 1.48942 1.34363 1.06316 1.21144 0.94788 0.91896 0.88164 0.92153 1.21128 0.95258 0.87299 0.94274 1.42495 1.68026 1.20788 1.07045 1.19592 1.28686 0.98375 0.90952 0.90556 1.25497 1.02266 1.01032 0.97423 1.69830 1.47668 1.30476 1.13460 0.85194 0.77013 0.79417 0.78425 1.21222 1.22615 1.19639 1.21840 0.98327 0.95176 0.99046 1.21140 0.95974 0.97045 0.97397 1.21842 0.98276 1.00058 1.00033 1.21767 0.99343 0.97830 1.00568 1.22846 0.98044 0.99003 0.94322 1.22785 0.96863 0.98885 0.99856 1.22985 0.98692 0.94744 0.99484 0.91506 0.92449 0.92639 0.92360 0.94233 0.91143 0.88493 0.75973 0.94602 0.94665 0.79447 0.94173 0.92474 0.90474 0.91042 0.91697 0.94733 0.92938 0.91902 0.91804 0.92722 0.86486 0.92215 0.93632 0.89470 0.93428 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -2.51 5.51 30.59 0.17 -2.35 16 3 C -0.09 -1.84 4.67 30.59 0.14 -1.70 16 4 C -0.10 -2.81 0.82 -52.40 -0.04 -2.85 16 5 C 0.54 18.52 5.27 87.65 0.46 18.98 16 6 O -0.58 -23.83 15.60 -3.02 -0.05 -23.88 16 7 N -0.71 -23.54 4.48 -442.54 -1.98 -25.52 16 8 C 0.15 5.03 2.10 44.99 0.09 5.12 16 9 H 0.06 2.48 5.66 -2.38 -0.01 2.47 16 10 C 0.15 5.74 5.49 86.38 0.47 6.21 16 11 N -0.74 -36.97 5.43 -343.45 -1.87 -38.84 16 12 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 13 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 14 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 15 N -0.96 -58.33 13.06 21.65 0.28 -58.04 16 16 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 18 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 C -0.10 -2.91 4.46 30.59 0.14 -2.77 16 21 C -0.10 -2.43 2.80 -10.79 -0.03 -2.46 16 22 C -0.14 -3.92 9.06 71.98 0.65 -3.27 16 23 C -0.14 -2.71 9.19 71.98 0.66 -2.05 16 24 C -0.10 -2.65 6.83 31.12 0.21 -2.44 16 25 C -0.15 -4.27 7.81 31.12 0.24 -4.03 16 26 C -0.12 -3.45 7.22 31.12 0.22 -3.23 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.06 1.26 7.92 -2.39 -0.02 1.24 16 31 H 0.04 0.97 7.47 -2.39 -0.02 0.96 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.52 8.07 -2.39 -0.02 1.50 16 34 H 0.41 12.87 8.64 -92.71 -0.80 12.07 16 35 H 0.04 1.41 6.71 -2.38 -0.02 1.40 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.37 20.34 7.33 -92.71 -0.68 19.66 16 38 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 1.89 6.46 -2.39 -0.02 1.87 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.03 1.11 6.29 -2.39 -0.01 1.09 16 44 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.12 2.16 8.05 -2.39 -0.02 2.14 16 49 H 0.06 1.76 7.35 -2.39 -0.02 1.74 16 50 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.05 1.74 8.09 -2.38 -0.02 1.72 16 53 H 0.12 2.58 8.10 -2.39 -0.02 2.56 16 Total: -1.00 -66.71 412.33 3.22 -63.49 By element: Atomic # 1 Polarization: 50.10 SS G_CDS: -0.62 Total: 49.49 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.42 Total: -14.37 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -3.57 Total: -122.41 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -66.71 3.22 -63.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753738336.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.939 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds