Wall clock time and date at job start Fri Apr 10 2020 22:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47095 * 2 1 4 4 C 1.52994 * 109.47320 * 175.45495 * 3 2 1 5 5 C 1.50702 * 112.85169 * 303.21532 * 4 3 2 6 6 O 1.21281 * 120.00285 * 121.66805 * 5 4 3 7 7 N 1.34778 * 119.99793 * 301.66893 * 5 4 3 8 8 C 1.46497 * 120.00174 * 174.82355 * 7 5 4 9 9 H 1.09005 * 109.47052 * 37.94374 * 8 7 5 10 10 C 1.53001 * 109.47237 * 157.93808 * 8 7 5 11 11 N 1.46500 * 109.47040 * 305.00435 * 10 8 7 12 12 C 1.36935 * 119.99890 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.38811 * 119.99986 * 179.97438 * 12 11 10 15 15 N 1.31617 * 120.00444 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00053 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47222 * 60.00312 * 16 14 12 18 18 H 1.48503 * 109.47028 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47256 * 300.00111 * 16 14 12 20 20 C 1.52997 * 109.47336 * 277.93783 * 8 7 5 21 21 C 1.52997 * 109.47101 * 173.92206 * 20 8 7 22 22 C 1.53004 * 109.47362 * 173.20068 * 21 20 8 23 23 C 1.53001 * 109.47632 * 293.19784 * 21 20 8 24 24 C 1.53782 * 113.61618 * 172.01597 * 4 3 2 25 25 C 1.53958 * 87.01868 * 220.04812 * 24 4 3 26 26 C 1.53775 * 87.11381 * 25.36144 * 25 24 4 27 27 H 1.08999 * 109.47492 * 299.99761 * 1 2 3 28 28 H 1.09007 * 109.47510 * 60.00206 * 1 2 3 29 29 H 1.09000 * 109.46950 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47679 * 120.00213 * 2 1 3 31 31 H 1.09001 * 109.47127 * 240.00628 * 2 1 3 32 32 H 1.09002 * 109.47015 * 295.45909 * 3 2 1 33 33 H 1.09000 * 109.46758 * 55.45358 * 3 2 1 34 34 H 0.97003 * 120.00047 * 354.83114 * 7 5 4 35 35 H 1.09004 * 109.47075 * 65.00411 * 10 8 7 36 36 H 1.08998 * 109.47330 * 185.00539 * 10 8 7 37 37 H 0.96996 * 120.00305 * 0.02562 * 11 10 8 38 38 H 0.96994 * 120.00931 * 179.97438 * 15 14 12 39 39 H 1.08996 * 109.47300 * 293.92489 * 20 8 7 40 40 H 1.08998 * 109.46887 * 53.92497 * 20 8 7 41 41 H 1.09001 * 109.47172 * 53.20364 * 21 20 8 42 42 H 1.08993 * 109.46963 * 59.99779 * 22 21 20 43 43 H 1.08994 * 109.47366 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46675 * 300.00058 * 22 21 20 45 45 H 1.08994 * 109.47493 * 185.61802 * 23 21 20 46 46 H 1.09002 * 109.46898 * 305.62736 * 23 21 20 47 47 H 1.09005 * 109.46698 * 65.61527 * 23 21 20 48 48 H 1.08999 * 113.61307 * 334.56629 * 24 4 3 49 49 H 1.08995 * 113.61322 * 105.47435 * 24 4 3 50 50 H 1.08996 * 113.54030 * 270.80859 * 25 24 4 51 51 H 1.08997 * 113.66494 * 139.93268 * 25 24 4 52 52 H 1.08999 * 113.61695 * 220.08960 * 26 25 24 53 53 H 1.09002 * 113.61292 * 89.18425 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5656 1.4441 0.1143 5 6 4.0617 0.7149 1.3363 6 8 4.8174 -0.2260 1.2160 7 7 3.6655 1.1084 2.5630 8 6 4.0554 0.3323 3.7427 9 1 5.0751 -0.0319 3.6173 10 6 3.9807 1.2214 4.9856 11 7 4.7975 2.4198 4.7786 12 6 4.8837 3.3681 5.7627 13 1 4.3498 3.2323 6.6917 14 6 5.6581 4.5033 5.5668 15 7 6.3092 4.6686 4.4349 16 14 5.7762 5.7966 6.9095 17 1 6.3421 5.1842 8.1383 18 1 6.6579 6.9021 6.4558 19 1 4.4222 6.3320 7.2017 20 6 3.1060 -0.8560 3.9080 21 6 3.6012 -1.7498 5.0468 22 6 2.5664 -2.8420 5.3248 23 6 4.9295 -2.3957 4.6476 24 6 4.1959 2.8344 -0.0716 25 6 5.3062 2.1349 -0.8767 26 6 4.2810 1.0303 -1.1826 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.7446 1.9323 -0.9279 33 1 1.6116 1.9793 0.8465 34 1 3.1221 1.9055 2.6647 35 1 2.9454 1.5134 5.1618 36 1 4.3550 0.6713 5.8489 37 1 5.2768 2.5419 3.9442 38 1 6.8500 5.4620 4.2978 39 1 2.1053 -0.4920 4.1407 40 1 3.0777 -1.4299 2.9818 41 1 3.7448 -1.1485 5.9445 42 1 2.4227 -3.4433 4.4272 43 1 2.9190 -3.4785 6.1364 44 1 1.6201 -2.3819 5.6093 45 1 5.2323 -3.1081 5.4149 46 1 4.8098 -2.9149 3.6966 47 1 5.6928 -1.6241 4.5466 48 1 3.5865 3.5139 -0.6675 49 1 4.5460 3.2830 0.8580 50 1 6.1418 1.7974 -0.2636 51 1 5.6244 2.6915 -1.7582 52 1 4.6997 0.0244 -1.1485 53 1 3.6949 1.2156 -2.0827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753738337.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:43 Heat of formation + Delta-G solvation = -45.372977 kcal Electronic energy + Delta-G solvation = -27992.832294 eV Core-core repulsion = 24477.955421 eV Total energy + Delta-G solvation = -3514.876873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.61454 -38.16568 -36.55310 -34.82048 -34.37216 -33.39845 -31.09030 -29.31945 -28.24313 -27.00288 -25.56695 -25.49509 -24.17128 -22.81675 -22.04568 -21.15805 -20.58058 -19.40004 -18.81472 -17.09419 -16.25727 -15.95769 -15.55114 -15.24593 -14.95040 -14.55910 -14.39624 -14.04072 -13.72489 -13.57315 -13.32668 -13.15106 -13.05914 -12.78764 -12.35030 -12.32560 -12.19700 -12.17058 -12.14412 -11.84865 -11.62348 -11.54808 -11.08105 -11.05980 -10.87157 -10.82134 -10.75568 -10.73989 -10.66866 -10.41059 -10.26326 -10.05748 -9.98404 -9.95028 -9.73192 -9.29313 -8.90003 -8.53270 -6.95378 -5.78030 -3.07558 3.01581 3.42264 3.47150 3.47958 3.54369 4.48505 4.56789 4.65606 4.81800 4.95675 4.99320 5.04695 5.05139 5.09658 5.13285 5.22480 5.36344 5.47447 5.54997 5.56196 5.60659 5.74324 5.75852 5.77189 5.77963 5.82340 5.82412 5.87333 5.92708 5.96058 6.02861 6.03317 6.12612 6.13533 6.15310 6.20691 6.24326 6.26723 6.30547 6.37803 6.38690 6.48069 6.53542 6.56382 6.62712 6.76883 7.04054 7.67318 7.98469 8.39829 8.65938 9.51669 10.07911 10.43588 11.44138 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.009176 B = 0.005142 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.600256 B = 5444.497721 C = 7287.518805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.097 4.097 4 C -0.107 4.107 5 C 0.544 3.456 6 O -0.546 6.546 7 N -0.709 5.709 8 C 0.136 3.864 9 H 0.088 0.912 10 C 0.145 3.855 11 N -0.730 5.730 12 C -0.243 4.243 13 H 0.069 0.931 14 C -0.010 4.010 15 N -0.930 5.930 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.118 4.118 21 C -0.097 4.097 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.116 4.116 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.022 0.978 36 H 0.034 0.966 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.086 0.914 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.066 0.934 52 H 0.079 0.921 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.272 -10.431 -9.069 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.135 4.135 4 C -0.111 4.111 5 C 0.330 3.670 6 O -0.424 6.424 7 N -0.358 5.358 8 C 0.032 3.968 9 H 0.106 0.894 10 C 0.017 3.983 11 N -0.375 5.375 12 C -0.374 4.374 13 H 0.087 0.913 14 C -0.207 4.207 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.157 4.157 21 C -0.116 4.116 22 C -0.201 4.201 23 C -0.204 4.204 24 C -0.165 4.165 25 C -0.178 4.178 26 C -0.154 4.154 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.238 0.762 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.105 0.895 49 H 0.100 0.900 50 H 0.102 0.898 51 H 0.085 0.915 52 H 0.097 0.903 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.751 -11.017 -8.987 17.241 hybrid contribution -0.007 1.274 0.591 1.405 sum -9.758 -9.743 -8.396 16.144 Atomic orbital electron populations 1.21758 0.95901 1.01410 1.01669 1.21517 0.95582 0.96751 1.02375 1.21526 0.92247 0.97214 1.02516 1.22019 0.95976 0.98272 0.94789 1.19764 0.79807 0.83494 0.83979 1.90643 1.35457 1.29713 1.86570 1.45920 1.54509 1.29840 1.05561 1.21294 0.99282 0.91147 0.85116 0.89422 1.21001 0.95127 0.88488 0.93702 1.42339 1.56702 1.19307 1.19166 1.19159 1.24151 0.98146 0.95908 0.91284 1.24725 1.00022 0.98624 0.97301 1.69648 1.34912 1.29041 1.24259 0.86290 0.77350 0.81378 0.81263 1.21294 1.21713 1.21311 1.21965 0.98930 0.96149 0.98620 1.21132 0.95322 0.96387 0.98751 1.21820 0.98747 0.98471 1.01066 1.21856 0.97125 1.00583 1.00798 1.23009 0.97449 0.94224 1.01802 1.22847 0.97329 0.97411 1.00178 1.22813 0.97219 1.00330 0.94998 0.92688 0.92925 0.92978 0.91948 0.91962 0.91121 0.91407 0.76194 0.96006 0.94798 0.78004 0.93463 0.92009 0.91846 0.90462 0.93063 0.92935 0.92910 0.93208 0.92864 0.92160 0.89505 0.89955 0.89834 0.91505 0.90277 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.15 0.37 -1.00 16 2 C -0.12 -1.35 5.66 -26.73 -0.15 -1.50 16 3 C -0.10 -1.06 4.60 -26.73 -0.12 -1.19 16 4 C -0.11 -1.42 0.81 -154.85 -0.13 -1.55 16 5 C 0.54 8.90 5.15 -10.98 -0.06 8.84 16 6 O -0.55 -10.57 15.57 5.56 0.09 -10.49 16 7 N -0.71 -11.48 4.49 -53.81 -0.24 -11.72 16 8 C 0.14 2.30 2.10 -67.93 -0.14 2.15 16 9 H 0.09 1.70 5.96 -51.93 -0.31 1.39 16 10 C 0.14 2.81 5.47 -4.04 -0.02 2.78 16 11 N -0.73 -17.90 5.43 -59.91 -0.33 -18.22 16 12 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 15 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 16 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.12 -1.65 4.38 -26.73 -0.12 -1.77 16 21 C -0.10 -1.26 2.81 -90.62 -0.25 -1.51 16 22 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 23 C -0.15 -1.96 8.85 37.16 0.33 -1.63 16 24 C -0.13 -1.72 7.24 -25.82 -0.19 -1.91 16 25 C -0.14 -1.89 7.81 -25.83 -0.20 -2.10 16 26 C -0.12 -1.46 6.85 -25.92 -0.18 -1.63 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.79 7.15 -51.93 -0.37 0.42 16 31 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 32 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 33 H 0.07 0.74 8.01 -51.93 -0.42 0.33 16 34 H 0.40 6.43 8.45 -40.82 -0.34 6.09 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.03 0.67 6.70 -51.93 -0.35 0.32 16 37 H 0.39 10.13 7.33 -40.82 -0.30 9.83 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.08 1.06 6.42 -51.93 -0.33 0.72 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.91 6.76 -51.93 -0.35 0.56 16 48 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 49 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 50 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.08 1.12 7.35 -51.93 -0.38 0.74 16 53 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 LS Contribution 412.24 15.07 6.21 6.21 Total: -1.00 -30.18 412.24 -9.63 -39.81 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -10.29 Total: 14.59 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -0.77 Total: -10.37 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.16 Total: -56.85 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.18 -9.63 -39.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753738337.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.562 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds