Wall clock time and date at job start Fri Apr 10 2020 22:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47095 * 2 1 4 4 C 1.52994 * 109.47320 * 175.45495 * 3 2 1 5 5 C 1.50702 * 112.85169 * 303.21532 * 4 3 2 6 6 O 1.21281 * 120.00285 * 121.66805 * 5 4 3 7 7 N 1.34778 * 119.99793 * 301.66893 * 5 4 3 8 8 C 1.46497 * 120.00174 * 174.82355 * 7 5 4 9 9 H 1.09005 * 109.47052 * 37.94374 * 8 7 5 10 10 C 1.53001 * 109.47237 * 157.93808 * 8 7 5 11 11 N 1.46500 * 109.47040 * 305.00435 * 10 8 7 12 12 C 1.36935 * 119.99890 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.38811 * 119.99986 * 179.97438 * 12 11 10 15 15 N 1.31617 * 120.00444 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00053 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47222 * 60.00312 * 16 14 12 18 18 H 1.48503 * 109.47028 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47256 * 300.00111 * 16 14 12 20 20 C 1.52997 * 109.47336 * 277.93783 * 8 7 5 21 21 C 1.52997 * 109.47101 * 173.92206 * 20 8 7 22 22 C 1.53004 * 109.47362 * 173.20068 * 21 20 8 23 23 C 1.53001 * 109.47632 * 293.19784 * 21 20 8 24 24 C 1.53782 * 113.61618 * 172.01597 * 4 3 2 25 25 C 1.53958 * 87.01868 * 220.04812 * 24 4 3 26 26 C 1.53775 * 87.11381 * 25.36144 * 25 24 4 27 27 H 1.08999 * 109.47492 * 299.99761 * 1 2 3 28 28 H 1.09007 * 109.47510 * 60.00206 * 1 2 3 29 29 H 1.09000 * 109.46950 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47679 * 120.00213 * 2 1 3 31 31 H 1.09001 * 109.47127 * 240.00628 * 2 1 3 32 32 H 1.09002 * 109.47015 * 295.45909 * 3 2 1 33 33 H 1.09000 * 109.46758 * 55.45358 * 3 2 1 34 34 H 0.97003 * 120.00047 * 354.83114 * 7 5 4 35 35 H 1.09004 * 109.47075 * 65.00411 * 10 8 7 36 36 H 1.08998 * 109.47330 * 185.00539 * 10 8 7 37 37 H 0.96996 * 120.00305 * 0.02562 * 11 10 8 38 38 H 0.96994 * 120.00931 * 179.97438 * 15 14 12 39 39 H 1.08996 * 109.47300 * 293.92489 * 20 8 7 40 40 H 1.08998 * 109.46887 * 53.92497 * 20 8 7 41 41 H 1.09001 * 109.47172 * 53.20364 * 21 20 8 42 42 H 1.08993 * 109.46963 * 59.99779 * 22 21 20 43 43 H 1.08994 * 109.47366 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.46675 * 300.00058 * 22 21 20 45 45 H 1.08994 * 109.47493 * 185.61802 * 23 21 20 46 46 H 1.09002 * 109.46898 * 305.62736 * 23 21 20 47 47 H 1.09005 * 109.46698 * 65.61527 * 23 21 20 48 48 H 1.08999 * 113.61307 * 334.56629 * 24 4 3 49 49 H 1.08995 * 113.61322 * 105.47435 * 24 4 3 50 50 H 1.08996 * 113.54030 * 270.80859 * 25 24 4 51 51 H 1.08997 * 113.66494 * 139.93268 * 25 24 4 52 52 H 1.08999 * 113.61695 * 220.08960 * 26 25 24 53 53 H 1.09002 * 113.61292 * 89.18425 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5656 1.4441 0.1143 5 6 4.0617 0.7149 1.3363 6 8 4.8174 -0.2260 1.2160 7 7 3.6655 1.1084 2.5630 8 6 4.0554 0.3323 3.7427 9 1 5.0751 -0.0319 3.6173 10 6 3.9807 1.2214 4.9856 11 7 4.7975 2.4198 4.7786 12 6 4.8837 3.3681 5.7627 13 1 4.3498 3.2323 6.6917 14 6 5.6581 4.5033 5.5668 15 7 6.3092 4.6686 4.4349 16 14 5.7762 5.7966 6.9095 17 1 6.3421 5.1842 8.1383 18 1 6.6579 6.9021 6.4558 19 1 4.4222 6.3320 7.2017 20 6 3.1060 -0.8560 3.9080 21 6 3.6012 -1.7498 5.0468 22 6 2.5664 -2.8420 5.3248 23 6 4.9295 -2.3957 4.6476 24 6 4.1959 2.8344 -0.0716 25 6 5.3062 2.1349 -0.8767 26 6 4.2810 1.0303 -1.1826 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.7446 1.9323 -0.9279 33 1 1.6116 1.9793 0.8465 34 1 3.1221 1.9055 2.6647 35 1 2.9454 1.5134 5.1618 36 1 4.3550 0.6713 5.8489 37 1 5.2768 2.5419 3.9442 38 1 6.8500 5.4620 4.2978 39 1 2.1053 -0.4920 4.1407 40 1 3.0777 -1.4299 2.9818 41 1 3.7448 -1.1485 5.9445 42 1 2.4227 -3.4433 4.4272 43 1 2.9190 -3.4785 6.1364 44 1 1.6201 -2.3819 5.6093 45 1 5.2323 -3.1081 5.4149 46 1 4.8098 -2.9149 3.6966 47 1 5.6928 -1.6241 4.5466 48 1 3.5865 3.5139 -0.6675 49 1 4.5460 3.2830 0.8580 50 1 6.1418 1.7974 -0.2636 51 1 5.6244 2.6915 -1.7582 52 1 4.6997 0.0244 -1.1485 53 1 3.6949 1.2156 -2.0827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753738337.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:42 Heat of formation + Delta-G solvation = -62.138513 kcal Electronic energy + Delta-G solvation = -27993.559302 eV Core-core repulsion = 24477.955421 eV Total energy + Delta-G solvation = -3515.603881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83566 -39.43189 -37.85488 -36.36644 -35.36232 -34.92440 -32.94556 -30.74354 -29.23326 -28.02988 -27.22909 -26.58670 -25.30108 -24.49717 -23.34295 -22.25331 -21.68714 -20.64175 -20.13010 -19.06875 -17.48915 -17.33459 -16.87617 -16.54642 -16.04427 -15.99313 -15.67500 -15.38683 -15.08118 -14.92021 -14.67441 -14.50496 -14.29057 -14.06625 -13.75076 -13.39821 -13.30795 -13.20933 -13.18602 -13.03983 -12.94958 -12.73188 -12.62677 -12.46208 -12.26040 -12.04747 -12.01638 -11.91609 -11.82045 -11.76738 -11.59930 -11.54762 -11.37873 -11.09702 -10.97387 -10.95427 -10.58336 -9.91763 -9.00656 -7.93460 -5.23332 1.47844 1.50359 1.56419 1.70450 2.25267 2.56233 3.40201 3.45903 3.58095 3.68494 3.78163 3.86253 3.91705 4.01878 4.08449 4.17326 4.18765 4.21057 4.31068 4.39603 4.45615 4.56987 4.72863 4.74098 4.80110 4.81149 4.83983 4.86355 4.89348 4.92832 4.93797 4.99078 5.01778 5.03175 5.04686 5.10869 5.15291 5.16660 5.21367 5.28573 5.33296 5.40246 5.45524 5.47583 5.49229 5.51138 5.52504 5.64922 6.26356 6.64108 7.32751 7.33864 8.06762 8.31434 9.29168 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.009176 B = 0.005142 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.600256 B = 5444.497721 C = 7287.518805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.106 4.106 5 C 0.539 3.461 6 O -0.582 6.582 7 N -0.707 5.707 8 C 0.146 3.854 9 H 0.057 0.943 10 C 0.148 3.852 11 N -0.741 5.741 12 C -0.245 4.245 13 H 0.077 0.923 14 C -0.070 4.070 15 N -0.966 5.966 16 Si 0.972 3.028 17 H -0.281 1.281 18 H -0.298 1.298 19 H -0.275 1.275 20 C -0.104 4.104 21 C -0.097 4.097 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.122 4.122 25 C -0.146 4.146 26 C -0.105 4.105 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.405 0.595 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.373 0.627 38 H 0.250 0.750 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.048 0.952 47 H 0.033 0.967 48 H 0.118 0.882 49 H 0.046 0.954 50 H 0.047 0.953 51 H 0.089 0.911 52 H 0.059 0.941 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 -10.503 -9.305 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.129 4.129 4 C -0.109 4.109 5 C 0.327 3.673 6 O -0.463 6.463 7 N -0.356 5.356 8 C 0.041 3.959 9 H 0.075 0.925 10 C 0.021 3.979 11 N -0.384 5.384 12 C -0.377 4.377 13 H 0.095 0.905 14 C -0.263 4.263 15 N -0.617 5.617 16 Si 0.801 3.199 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.201 1.201 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.195 4.195 23 C -0.201 4.201 24 C -0.160 4.160 25 C -0.183 4.183 26 C -0.142 4.142 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.205 0.795 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.052 0.948 48 H 0.137 0.863 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.108 0.892 52 H 0.078 0.922 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.277 -11.113 -9.193 18.940 hybrid contribution 0.800 1.234 0.682 1.621 sum -11.477 -9.879 -8.511 17.371 Atomic orbital electron populations 1.21720 0.94295 1.01930 1.02337 1.21479 0.96918 0.96326 1.01259 1.21552 0.89879 0.97607 1.03901 1.22026 0.97891 0.97547 0.93440 1.20389 0.78996 0.83124 0.84802 1.90620 1.37053 1.31507 1.87088 1.45917 1.54303 1.29795 1.05576 1.21110 0.98680 0.91672 0.84457 0.92478 1.21112 0.94725 0.87089 0.94932 1.42502 1.57249 1.20476 1.18195 1.19572 1.23252 0.98429 0.96456 0.90461 1.25522 1.00392 1.00923 0.99458 1.69820 1.36126 1.29462 1.26275 0.85245 0.77485 0.78563 0.78622 1.20711 1.22426 1.20113 1.21848 0.98717 0.94845 0.98870 1.21143 0.95737 0.96898 0.97794 1.21765 0.98277 0.97761 1.01697 1.21822 0.96858 1.00131 1.01250 1.23030 0.97835 0.94551 1.00591 1.22824 0.96622 0.98327 1.00531 1.22827 0.96811 0.98747 0.95841 0.92760 0.91477 0.92600 0.94356 0.91866 0.88469 0.91359 0.75956 0.94602 0.94547 0.79480 0.94130 0.90501 0.92532 0.91042 0.92715 0.91763 0.91916 0.91471 0.93250 0.94762 0.86341 0.93523 0.93427 0.89207 0.92236 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.57 16 2 C -0.12 -2.44 5.66 30.59 0.17 -2.26 16 3 C -0.09 -1.81 4.60 30.59 0.14 -1.67 16 4 C -0.11 -2.76 0.81 -52.40 -0.04 -2.80 16 5 C 0.54 18.32 5.15 87.66 0.45 18.78 16 6 O -0.58 -23.83 15.57 -3.03 -0.05 -23.88 16 7 N -0.71 -23.68 4.49 -442.53 -1.99 -25.66 16 8 C 0.15 5.07 2.10 44.99 0.09 5.17 16 9 H 0.06 2.36 5.96 -2.38 -0.01 2.35 16 10 C 0.15 5.78 5.47 86.38 0.47 6.26 16 11 N -0.74 -37.12 5.43 -343.45 -1.87 -38.98 16 12 C -0.25 -13.45 9.99 84.03 0.84 -12.61 16 13 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 14 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 15 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 16 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 C -0.10 -2.89 4.38 30.59 0.13 -2.75 16 21 C -0.10 -2.44 2.81 -10.79 -0.03 -2.47 16 22 C -0.14 -2.71 9.19 71.98 0.66 -2.04 16 23 C -0.14 -3.88 8.85 71.98 0.64 -3.24 16 24 C -0.12 -3.26 7.24 31.18 0.23 -3.04 16 25 C -0.15 -3.95 7.81 31.18 0.24 -3.70 16 26 C -0.10 -2.52 6.85 31.12 0.21 -2.31 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.94 7.15 -2.39 -0.02 0.93 16 31 H 0.06 1.24 8.05 -2.39 -0.02 1.22 16 32 H 0.10 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.07 1.36 8.01 -2.39 -0.02 1.34 16 34 H 0.41 13.20 8.45 -92.71 -0.78 12.41 16 35 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.04 1.43 6.70 -2.39 -0.02 1.42 16 37 H 0.37 20.43 7.33 -92.71 -0.68 19.75 16 38 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.68 8.09 -2.39 -0.02 1.66 16 41 H 0.07 1.90 6.42 -2.39 -0.02 1.88 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.03 1.08 6.76 -2.38 -0.02 1.07 16 48 H 0.12 2.40 8.10 -2.39 -0.02 2.39 16 49 H 0.05 1.58 8.09 -2.39 -0.02 1.56 16 50 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 51 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 52 H 0.06 1.69 7.35 -2.39 -0.02 1.67 16 53 H 0.12 2.02 8.08 -2.39 -0.02 2.00 16 Total: -1.00 -67.09 412.24 3.21 -63.89 By element: Atomic # 1 Polarization: 49.91 SS G_CDS: -0.60 Total: 49.31 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 5.39 Total: -13.81 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -3.57 Total: -123.23 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -67.09 3.21 -63.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753738337.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.751 kcal (2) G-P(sol) polarization free energy of solvation -67.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds