Wall clock time and date at job start Fri Apr 10 2020 22:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46879 * 2 1 4 4 C 1.53002 * 109.46986 * 185.15486 * 3 2 1 5 5 C 1.53005 * 109.46769 * 304.69858 * 4 3 2 6 6 C 1.53003 * 109.46950 * 295.42575 * 5 4 3 7 7 C 1.53001 * 109.46817 * 185.13955 * 6 5 4 8 8 C 1.50695 * 109.47385 * 64.69641 * 4 3 2 9 9 O 1.21287 * 120.00115 * 255.30208 * 8 4 3 10 10 N 1.34774 * 120.00250 * 75.29916 * 8 4 3 11 11 C 1.46931 * 120.62736 * 354.21759 * 10 8 4 12 12 C 1.53187 * 108.77704 * 233.58379 * 11 10 8 13 13 C 1.53044 * 109.31152 * 305.36668 * 12 11 10 14 14 H 1.08997 * 109.46260 * 181.38252 * 13 12 11 15 15 N 1.46500 * 109.45910 * 301.34236 * 13 12 11 16 16 C 1.36932 * 120.00069 * 275.06971 * 15 13 12 17 17 H 1.07998 * 120.00184 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99890 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00406 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99934 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46815 * 89.99527 * 20 18 16 22 22 H 1.48496 * 109.47033 * 210.00062 * 20 18 16 23 23 H 1.48501 * 109.46844 * 329.99638 * 20 18 16 24 24 C 1.53043 * 109.53867 * 61.36189 * 13 12 11 25 25 H 1.09000 * 109.49767 * 58.62311 * 24 13 12 26 26 C 1.53000 * 109.49835 * 178.68529 * 24 13 12 27 27 C 1.46921 * 120.63385 * 174.19262 * 10 8 4 28 28 H 1.08996 * 109.47708 * 300.00177 * 1 2 3 29 29 H 1.09004 * 109.47256 * 60.00089 * 1 2 3 30 30 H 1.09002 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47502 * 240.00557 * 2 1 3 32 32 H 1.08998 * 109.47078 * 119.99529 * 2 1 3 33 33 H 1.08993 * 109.47037 * 65.15527 * 3 2 1 34 34 H 1.09001 * 109.47169 * 305.14974 * 3 2 1 35 35 H 1.08993 * 109.47381 * 184.69942 * 4 3 2 36 36 H 1.09004 * 109.47498 * 55.42781 * 5 4 3 37 37 H 1.09006 * 109.47096 * 175.43127 * 5 4 3 38 38 H 1.08996 * 109.47145 * 305.14331 * 6 5 4 39 39 H 1.08996 * 109.46889 * 65.14406 * 6 5 4 40 40 H 1.08996 * 109.47022 * 60.00533 * 7 6 5 41 41 H 1.09001 * 109.47077 * 179.97438 * 7 6 5 42 42 H 1.08996 * 109.47571 * 300.00116 * 7 6 5 43 43 H 1.09002 * 109.58726 * 353.37304 * 11 10 8 44 44 H 1.08998 * 109.58404 * 113.65256 * 11 10 8 45 45 H 1.08996 * 109.49806 * 185.41447 * 12 11 10 46 46 H 1.08998 * 109.49992 * 65.31189 * 12 11 10 47 47 H 0.97000 * 119.99700 * 95.06849 * 15 13 12 48 48 H 0.96991 * 120.00365 * 180.02562 * 19 18 16 49 49 H 1.08996 * 109.47520 * 59.99489 * 26 24 13 50 50 H 1.08995 * 109.47536 * 180.02562 * 26 24 13 51 51 H 1.09004 * 109.47141 * 300.00164 * 26 24 13 52 52 H 1.09002 * 109.58559 * 6.62491 * 27 10 8 53 53 H 1.09007 * 109.58597 * 246.20655 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5644 1.4446 -0.1296 5 6 4.1720 0.5889 0.9838 6 6 3.8710 1.2289 2.3406 7 6 4.5854 0.4453 3.4437 8 6 3.9555 0.8767 -1.4696 9 8 4.4057 -0.2470 -1.5440 10 7 3.8049 1.6175 -2.5854 11 6 3.1454 2.9293 -2.5296 12 6 2.0102 2.9547 -3.5579 13 6 2.5672 2.5892 -4.9357 14 1 1.7662 2.6305 -5.6738 15 7 3.6196 3.5394 -5.3044 16 6 3.2909 4.7295 -5.8965 17 1 2.2558 4.9675 -6.0922 18 6 4.2882 5.6295 -6.2463 19 7 5.5497 5.3392 -6.0084 20 14 3.8396 7.2534 -7.0535 21 1 3.6219 8.2832 -6.0061 22 1 4.9440 7.6830 -7.9484 23 1 2.5963 7.0845 -7.8478 24 6 3.1494 1.1745 -4.8937 25 1 2.3727 0.4701 -4.5960 26 6 3.6764 0.7977 -6.2797 27 6 4.2975 1.1290 -3.8805 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.7539 1.9290 0.9325 34 1 1.6032 1.9824 -0.8403 35 1 3.9349 2.4662 -0.0459 36 1 3.7402 -0.4114 0.9501 37 1 5.2511 0.5237 0.8442 38 1 4.2226 2.2606 2.3417 39 1 2.7961 1.2111 2.5202 40 1 5.6603 0.4631 3.2640 41 1 4.3714 0.9015 4.4102 42 1 4.2338 -0.5864 3.4426 43 1 2.7381 3.0914 -1.5316 44 1 3.8682 3.7117 -2.7607 45 1 1.5749 3.9533 -3.5946 46 1 1.2444 2.2336 -3.2722 47 1 4.5493 3.3254 -5.1290 48 1 6.2465 5.9682 -6.2525 49 1 4.4538 1.5016 -6.5767 50 1 4.0905 -0.2100 -6.2495 51 1 2.8598 0.8330 -7.0009 52 1 4.6504 0.1032 -3.7738 53 1 5.1137 1.7645 -4.2243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753764044.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:45 Heat of formation + Delta-G solvation = -73.156717 kcal Electronic energy + Delta-G solvation = -28114.954149 eV Core-core repulsion = 24598.872482 eV Total energy + Delta-G solvation = -3516.081666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.65374 -39.43389 -37.52919 -35.86291 -34.67375 -34.33792 -32.98311 -31.62248 -30.90146 -27.87209 -27.07122 -26.65700 -25.33801 -24.39546 -23.08994 -22.89965 -21.45599 -20.28090 -19.32878 -19.18177 -17.90047 -17.10603 -16.81341 -16.47786 -16.32361 -15.86979 -15.65230 -15.31610 -14.91876 -14.84327 -14.68758 -14.59308 -14.25763 -14.09646 -13.86066 -13.56039 -13.20470 -13.01901 -12.98473 -12.84954 -12.80786 -12.69086 -12.61383 -12.42239 -12.32046 -12.10437 -11.96581 -11.86091 -11.80053 -11.76025 -11.60545 -11.55448 -11.46664 -11.18501 -11.14709 -10.86653 -10.51525 -9.54068 -8.91163 -7.87535 -5.13761 1.50311 1.50963 1.58664 1.67242 2.07506 2.60698 3.45641 3.48464 3.74986 3.85231 3.87621 3.92583 4.04624 4.10957 4.14116 4.22629 4.30007 4.32894 4.37474 4.40834 4.55106 4.55974 4.64737 4.66562 4.71523 4.74957 4.82609 4.86555 4.87955 4.93065 4.99666 5.03145 5.04737 5.08480 5.13484 5.15268 5.22849 5.24826 5.29758 5.32497 5.35664 5.39713 5.43949 5.47198 5.49729 5.57931 5.61475 5.67984 6.34067 6.53206 7.21766 7.41643 8.17974 8.41710 9.35755 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.003667 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.645613 B = 7634.643177 C = 7977.354664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.104 4.104 5 C -0.097 4.097 6 C -0.119 4.119 7 C -0.152 4.152 8 C 0.516 3.484 9 O -0.586 6.586 10 N -0.602 5.602 11 C 0.117 3.883 12 C -0.140 4.140 13 C 0.173 3.827 14 H 0.046 0.954 15 N -0.725 5.725 16 C -0.226 4.226 17 H 0.075 0.925 18 C -0.073 4.073 19 N -0.969 5.969 20 Si 0.963 3.037 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.272 1.272 24 C -0.097 4.097 25 H 0.082 0.918 26 C -0.132 4.132 27 C 0.123 3.877 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.108 0.892 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.373 0.627 48 H 0.247 0.753 49 H 0.039 0.961 50 H 0.062 0.938 51 H 0.059 0.941 52 H 0.078 0.922 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.419 -9.212 16.006 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.125 4.125 5 C -0.135 4.135 6 C -0.156 4.156 7 C -0.210 4.210 8 C 0.306 3.694 9 O -0.467 6.467 10 N -0.334 5.334 11 C -0.005 4.005 12 C -0.181 4.181 13 C 0.065 3.935 14 H 0.064 0.936 15 N -0.366 5.366 16 C -0.358 4.358 17 H 0.093 0.907 18 C -0.265 4.265 19 N -0.621 5.621 20 Si 0.794 3.206 21 H -0.217 1.217 22 H -0.231 1.231 23 H -0.197 1.197 24 C -0.117 4.117 25 H 0.100 0.900 26 C -0.189 4.189 27 C 0.000 4.000 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.126 0.874 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.206 0.794 48 H 0.056 0.944 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.078 0.922 52 H 0.096 0.904 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.300 -9.658 15.867 20.773 hybrid contribution 0.828 1.007 -1.018 1.654 sum -8.472 -8.651 14.849 19.160 Atomic orbital electron populations 1.21740 0.94635 1.01828 1.02288 1.21555 0.96637 0.96479 1.01433 1.21748 0.90867 0.97909 1.04228 1.21462 0.99109 1.01365 0.90564 1.21434 0.99620 0.99050 0.93350 1.21550 1.01635 0.99587 0.92871 1.21766 1.00192 1.00377 0.98646 1.21248 0.76690 0.84790 0.86678 1.90618 1.48134 1.20483 1.87435 1.48167 1.57916 1.19809 1.07471 1.21764 0.94942 0.82914 1.00910 1.22375 0.97158 1.01981 0.96574 1.20420 0.90864 0.88058 0.94188 0.93606 1.42591 1.04773 1.17247 1.71963 1.19567 0.92631 0.94308 1.29266 0.90664 1.25383 0.95301 1.01923 1.03907 1.69803 0.99359 1.37418 1.55482 0.85280 0.76624 0.80811 0.77884 1.21670 1.23075 1.19701 1.21599 0.97538 0.97302 0.95232 0.89964 1.21602 1.01184 1.00567 0.95597 1.21438 0.96215 0.99544 0.82778 0.91297 0.93023 0.92786 0.94674 0.91201 0.88165 0.90935 0.88049 0.91597 0.93661 0.91502 0.90346 0.93454 0.91576 0.92825 0.87425 0.93288 0.91319 0.90702 0.79368 0.94433 0.94163 0.91921 0.92188 0.90353 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -2.38 5.17 30.60 0.16 -2.22 16 3 C -0.11 -1.96 4.19 30.60 0.13 -1.83 16 4 C -0.10 -2.33 1.65 -11.54 -0.02 -2.35 16 5 C -0.10 -2.06 3.69 30.60 0.11 -1.95 16 6 C -0.12 -1.82 5.55 30.60 0.17 -1.65 16 7 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 8 C 0.52 15.96 5.87 87.66 0.51 16.47 16 9 O -0.59 -21.91 15.31 -3.05 -0.05 -21.96 16 10 N -0.60 -19.18 2.97 -818.92 -2.43 -21.62 16 11 C 0.12 3.52 5.35 86.36 0.46 3.98 16 12 C -0.14 -4.29 5.78 30.67 0.18 -4.11 16 13 C 0.17 6.29 2.53 45.02 0.11 6.40 16 14 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 15 N -0.72 -33.51 3.65 -322.81 -1.18 -34.69 16 16 C -0.23 -11.70 9.93 84.04 0.83 -10.86 16 17 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.97 -57.63 13.06 21.65 0.28 -57.35 16 20 Si 0.96 44.93 29.55 68.60 2.03 46.96 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 C -0.10 -3.15 2.67 -10.72 -0.03 -3.18 16 25 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 26 C -0.13 -4.27 9.05 71.98 0.65 -3.62 16 27 C 0.12 4.31 5.43 86.36 0.47 4.78 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.03 0.89 7.07 -2.39 -0.02 0.87 16 32 H 0.07 1.27 6.56 -2.39 -0.02 1.26 16 33 H 0.10 1.30 6.91 -2.39 -0.02 1.29 16 34 H 0.07 1.34 5.98 -2.39 -0.01 1.32 16 35 H 0.10 2.11 7.38 -2.39 -0.02 2.09 16 36 H 0.07 1.53 6.14 -2.38 -0.01 1.51 16 37 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.99 6.92 -2.39 -0.02 0.98 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.11 2.52 4.35 -2.39 -0.01 2.51 16 44 H 0.05 1.83 7.74 -2.39 -0.02 1.81 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.37 19.00 5.92 -92.71 -0.55 18.45 16 48 H 0.25 14.47 8.31 -92.72 -0.77 13.70 16 49 H 0.04 1.55 7.54 -2.39 -0.02 1.53 16 50 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 52 H 0.08 2.79 7.00 -2.39 -0.02 2.77 16 53 H 0.05 1.90 6.64 -2.38 -0.02 1.89 16 Total: -1.00 -63.58 394.26 4.61 -58.97 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.31 Total: 36.48 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.64 Total: -6.79 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -3.33 Total: -113.66 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -63.58 4.61 -58.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753764044.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.185 kcal (2) G-P(sol) polarization free energy of solvation -63.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds