Wall clock time and date at job start Fri Apr 10 2020 22:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47138 * 2 1 4 4 C 1.53006 * 109.47359 * 175.14158 * 3 2 1 5 5 C 1.52998 * 109.46668 * 294.93151 * 4 3 2 6 6 C 1.53003 * 109.47512 * 304.60906 * 5 4 3 7 7 C 1.52994 * 109.47240 * 185.28537 * 6 5 4 8 8 C 1.50695 * 109.47213 * 174.93388 * 4 3 2 9 9 O 1.21283 * 120.00445 * 7.02602 * 8 4 3 10 10 N 1.34775 * 119.99829 * 187.03400 * 8 4 3 11 11 C 1.46927 * 120.63025 * 4.58676 * 10 8 4 12 12 C 1.53630 * 108.54329 * 126.36962 * 11 10 8 13 13 C 1.53043 * 109.23934 * 54.85488 * 12 11 10 14 14 H 1.09007 * 109.45824 * 178.48861 * 13 12 11 15 15 N 1.46497 * 109.46065 * 58.53252 * 13 12 11 16 16 C 1.36945 * 120.00079 * 84.93181 * 15 13 12 17 17 H 1.08001 * 119.99518 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99775 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99594 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00441 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47556 * 89.99871 * 20 18 16 22 22 H 1.48500 * 109.47397 * 210.00071 * 20 18 16 23 23 H 1.48504 * 109.47149 * 329.99907 * 20 18 16 24 24 C 1.53037 * 109.53901 * 298.50921 * 13 12 11 25 25 H 1.08995 * 109.50071 * 301.41718 * 24 13 12 26 26 C 1.53004 * 109.52202 * 181.33171 * 24 13 12 27 27 C 1.46927 * 120.62931 * 184.86566 * 10 8 4 28 28 H 1.08992 * 109.47068 * 300.00008 * 1 2 3 29 29 H 1.08995 * 109.46758 * 60.00069 * 1 2 3 30 30 H 1.09000 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47122 * 239.99890 * 2 1 3 32 32 H 1.08997 * 109.47449 * 120.00180 * 2 1 3 33 33 H 1.08998 * 109.47401 * 55.13724 * 3 2 1 34 34 H 1.09004 * 109.47382 * 295.14093 * 3 2 1 35 35 H 1.09002 * 109.46796 * 54.92824 * 4 3 2 36 36 H 1.09004 * 109.47509 * 64.61207 * 5 4 3 37 37 H 1.09002 * 109.46895 * 184.61221 * 5 4 3 38 38 H 1.09002 * 109.46853 * 305.28934 * 6 5 4 39 39 H 1.09000 * 109.46948 * 65.28489 * 6 5 4 40 40 H 1.08999 * 109.46854 * 299.99692 * 7 6 5 41 41 H 1.08997 * 109.47396 * 60.00585 * 7 6 5 42 42 H 1.09002 * 109.47059 * 180.02562 * 7 6 5 43 43 H 1.09004 * 109.58599 * 246.19899 * 11 10 8 44 44 H 1.09000 * 109.58656 * 6.62912 * 11 10 8 45 45 H 1.08997 * 109.63613 * 294.86578 * 12 11 10 46 46 H 1.08996 * 109.42891 * 174.72396 * 12 11 10 47 47 H 0.97002 * 119.99975 * 264.92782 * 15 13 12 48 48 H 0.96999 * 119.99710 * 179.97438 * 19 18 16 49 49 H 1.08995 * 109.47451 * 300.14678 * 26 24 13 50 50 H 1.09005 * 109.46640 * 60.15291 * 26 24 13 51 51 H 1.08998 * 109.46746 * 180.14462 * 26 24 13 52 52 H 1.08996 * 109.59173 * 353.37359 * 27 10 8 53 53 H 1.08999 * 109.58372 * 113.65882 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4443 0.1222 5 6 3.9683 0.8740 1.4835 6 6 3.2741 1.6652 2.5939 7 6 3.7775 1.1822 3.9555 8 6 4.0775 2.8560 -0.0027 9 8 3.2966 3.7831 -0.0446 10 7 5.4035 3.0883 -0.0680 11 6 6.3574 1.9720 -0.1197 12 6 7.2717 2.1668 -1.3388 13 6 7.9252 3.5486 -1.2636 14 1 8.5955 3.6801 -2.1131 15 7 8.6884 3.6604 -0.0182 16 6 9.9740 3.1924 0.0414 17 1 10.4251 2.7406 -0.8297 18 6 10.6970 3.2978 1.2217 19 7 11.9325 2.8476 1.2790 20 14 9.9167 4.0786 2.7285 21 1 9.2343 3.0321 3.5311 22 1 10.9693 4.7261 3.5519 23 1 8.9259 5.0987 2.3005 24 6 6.8422 4.6294 -1.2966 25 1 6.2580 4.5313 -2.2116 26 6 7.4976 6.0113 -1.2548 27 6 5.9228 4.4627 -0.0827 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6073 1.9809 0.8432 34 1 1.7495 1.9306 -0.9303 35 1 3.9938 0.8307 -0.6702 36 1 3.6696 -0.1727 1.5419 37 1 5.0490 0.9507 1.6039 38 1 3.4981 2.7257 2.4788 39 1 2.1967 1.5124 2.5297 40 1 3.5534 0.1217 4.0704 41 1 4.8548 1.3351 4.0197 42 1 3.2825 1.7456 4.7465 43 1 6.9560 1.9604 0.7912 44 1 5.8146 1.0316 -0.2148 45 1 6.6835 2.0918 -2.2534 46 1 8.0446 1.3983 -1.3388 47 1 8.2832 4.0659 0.7643 48 1 12.4379 2.9216 2.1036 49 1 8.0825 6.1086 -0.3403 50 1 8.1516 6.1295 -2.1188 51 1 6.7254 6.7804 -1.2758 52 1 5.0932 5.1661 -0.1533 53 1 6.4845 4.6508 0.8323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753764045.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:51 Heat of formation + Delta-G solvation = -55.346109 kcal Electronic energy + Delta-G solvation = -28250.023441 eV Core-core repulsion = 24734.714101 eV Total energy + Delta-G solvation = -3515.309340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.51472 -38.25986 -36.55672 -34.48163 -33.78018 -32.89191 -31.52256 -30.80009 -29.74188 -26.81292 -26.20799 -25.38040 -23.59573 -23.14935 -22.23543 -21.65809 -20.53532 -18.99382 -18.20190 -17.85238 -16.70605 -16.03439 -15.83617 -15.41402 -14.76077 -14.55918 -14.40193 -13.99391 -13.90929 -13.77650 -13.55440 -13.42936 -13.38805 -12.81716 -12.60161 -12.42110 -12.27941 -12.12507 -11.92524 -11.80063 -11.62545 -11.55243 -11.36507 -11.13206 -11.08035 -11.00815 -10.95092 -10.75365 -10.68717 -10.59762 -10.48327 -10.35390 -10.23641 -9.86750 -9.57969 -9.43065 -8.97456 -8.31543 -7.30587 -5.81465 -3.16577 2.80219 3.19771 3.31659 3.34629 3.41412 4.46560 4.53902 4.57474 4.73410 4.88360 4.94675 5.00256 5.03961 5.12114 5.15222 5.23631 5.32615 5.35052 5.40245 5.47087 5.51397 5.55702 5.59653 5.62128 5.63516 5.70064 5.73806 5.78222 5.81343 5.84728 5.88378 5.94233 5.96663 6.01344 6.07941 6.16279 6.17510 6.21766 6.23006 6.30331 6.34721 6.37960 6.49031 6.57477 6.66449 6.74911 6.89856 7.65729 7.95230 8.36180 8.37855 9.16109 9.88789 10.08837 11.37003 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.004303 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.789793 B = 6505.319902 C = 7249.413092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.126 4.126 7 C -0.152 4.152 8 C 0.520 3.480 9 O -0.553 6.553 10 N -0.604 5.604 11 C 0.111 3.889 12 C -0.150 4.150 13 C 0.185 3.815 14 H 0.059 0.941 15 N -0.743 5.743 16 C -0.240 4.240 17 H 0.090 0.910 18 C 0.007 3.993 19 N -0.933 5.933 20 Si 0.877 3.123 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.111 4.111 25 H 0.070 0.930 26 C -0.138 4.138 27 C 0.118 3.882 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.064 0.936 50 H 0.057 0.943 51 H 0.045 0.955 52 H 0.085 0.915 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.386 -4.614 -2.066 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.210 4.210 8 C 0.308 3.692 9 O -0.432 6.432 10 N -0.336 5.336 11 C -0.011 4.011 12 C -0.191 4.191 13 C 0.075 3.925 14 H 0.077 0.923 15 N -0.387 5.387 16 C -0.370 4.370 17 H 0.108 0.892 18 C -0.189 4.189 19 N -0.581 5.581 20 Si 0.708 3.292 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.131 4.131 25 H 0.089 0.911 26 C -0.196 4.196 27 C -0.005 4.005 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.064 0.936 52 H 0.104 0.896 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.544 -4.214 -2.129 20.106 hybrid contribution -0.187 0.462 1.164 1.266 sum -19.731 -3.751 -0.965 20.108 Atomic orbital electron populations 1.21753 0.95922 1.01332 1.01859 1.21597 0.95836 0.96841 1.02095 1.21472 0.92584 0.96508 1.03314 1.21372 0.97727 0.94047 0.99726 1.21740 1.01490 0.99882 0.92346 1.21594 1.00275 1.00183 0.94283 1.21771 1.01497 1.00892 0.96805 1.20577 0.81779 0.91252 0.75575 1.90643 1.55518 1.45853 1.51137 1.48145 1.05605 1.07737 1.72126 1.21909 0.90705 0.87931 1.00571 1.22584 0.98704 1.01767 0.96043 1.20174 0.90952 0.90696 0.90656 0.92292 1.42845 1.13509 1.73185 1.09187 1.19058 0.87675 1.31859 0.98372 0.89176 1.24630 0.95893 1.00991 0.97388 1.69691 1.09442 1.51929 1.27045 0.86672 0.78540 0.79486 0.84507 1.21140 1.21737 1.20431 1.21740 0.96769 0.96782 0.97800 0.91114 1.21680 0.99941 0.94841 1.03162 1.21606 0.97481 0.82947 0.98451 0.92787 0.92801 0.92924 0.92116 0.91653 0.90809 0.91586 0.88829 0.90715 0.90739 0.91988 0.91592 0.92823 0.92571 0.92917 0.90331 0.90564 0.92930 0.90269 0.80599 0.93079 0.91682 0.92368 0.93584 0.89614 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.05 5.80 -26.73 -0.15 -1.21 16 3 C -0.10 -1.07 3.67 -26.73 -0.10 -1.17 16 4 C -0.11 -1.22 1.65 -91.77 -0.15 -1.37 16 5 C -0.12 -1.23 4.27 -26.73 -0.11 -1.34 16 6 C -0.13 -1.40 5.17 -26.73 -0.14 -1.54 16 7 C -0.15 -1.58 9.91 37.15 0.37 -1.21 16 8 C 0.52 7.71 5.87 -10.99 -0.06 7.64 16 9 O -0.55 -9.81 15.42 5.55 0.09 -9.72 16 10 N -0.60 -9.10 2.97 -172.50 -0.51 -9.61 16 11 C 0.11 1.62 4.69 -3.48 -0.02 1.60 16 12 C -0.15 -2.33 5.80 -26.38 -0.15 -2.48 16 13 C 0.18 3.28 2.53 -67.89 -0.17 3.10 16 14 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 15 N -0.74 -16.04 3.44 -53.38 -0.18 -16.22 16 16 C -0.24 -6.30 10.41 -15.06 -0.16 -6.46 16 17 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 18 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 19 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 20 Si 0.88 21.44 27.73 -169.99 -4.71 16.72 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 24 C -0.11 -1.73 2.67 -90.50 -0.24 -1.97 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 C -0.14 -2.11 9.06 37.16 0.34 -1.77 16 27 C 0.12 1.88 5.42 -3.71 -0.02 1.86 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.52 6.45 -51.93 -0.34 0.18 16 33 H 0.07 0.85 6.18 -51.93 -0.32 0.53 16 34 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.09 0.96 7.11 -51.93 -0.37 0.59 16 36 H 0.07 0.66 6.69 -51.93 -0.35 0.31 16 37 H 0.07 0.86 6.02 -51.93 -0.31 0.55 16 38 H 0.06 0.84 7.20 -51.93 -0.37 0.46 16 39 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.32 7.73 -51.93 -0.40 0.92 16 44 H 0.08 0.91 5.06 -51.93 -0.26 0.65 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.36 7.84 3.79 -40.82 -0.15 7.69 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.06 1.13 7.53 -51.93 -0.39 0.73 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 53 H 0.06 1.11 6.65 -51.93 -0.35 0.77 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -30.09 390.77 -8.98 -39.07 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -9.82 Total: 8.47 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.50 Total: -7.01 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.08 Total: -53.42 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.09 -8.98 -39.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753764045.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.272 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds