Wall clock time and date at job start Fri Apr 10 2020 22:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47229 * 2 1 4 4 H 1.08999 * 109.49238 * 305.00391 * 3 2 1 5 5 C 1.53191 * 109.49631 * 65.06099 * 3 2 1 6 6 N 1.46925 * 108.77441 * 174.58721 * 5 3 2 7 7 C 1.34777 * 120.62820 * 126.37467 * 6 5 3 8 8 O 1.21273 * 120.00201 * 355.16271 * 7 6 5 9 9 C 1.50704 * 119.99511 * 175.16869 * 7 6 5 10 10 C 1.52994 * 109.47174 * 65.80228 * 9 7 6 11 11 C 1.53002 * 109.46702 * 185.80172 * 9 7 6 12 12 C 1.53001 * 109.47088 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47255 * 305.79967 * 9 7 6 14 14 C 1.53002 * 109.47135 * 294.72270 * 13 9 7 15 15 C 1.46928 * 118.74002 * 306.39322 * 6 5 3 16 16 C 1.53195 * 108.77535 * 53.60739 * 15 6 5 17 17 C 1.53036 * 109.33831 * 305.38322 * 16 15 6 18 18 H 1.08997 * 109.43517 * 301.30839 * 17 16 15 19 19 N 1.46499 * 109.48700 * 181.35047 * 17 16 15 20 20 C 1.36946 * 119.99994 * 84.91374 * 19 17 16 21 21 H 1.08004 * 119.99392 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99984 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00211 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99913 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46863 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47072 * 119.99639 * 24 22 20 27 27 H 1.48497 * 109.46966 * 239.99804 * 24 22 20 28 28 H 1.09007 * 109.47410 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47158 * 59.99961 * 1 2 3 30 30 H 1.08997 * 109.47372 * 299.99743 * 1 2 3 31 31 H 1.09005 * 109.47158 * 120.00039 * 2 1 3 32 32 H 1.08999 * 109.47078 * 239.99817 * 2 1 3 33 33 H 1.08995 * 109.59139 * 294.37670 * 5 3 2 34 34 H 1.09008 * 109.58732 * 54.65851 * 5 3 2 35 35 H 1.09004 * 109.47290 * 75.55314 * 10 9 7 36 36 H 1.09000 * 109.47428 * 195.55183 * 10 9 7 37 37 H 1.08998 * 109.47703 * 315.55065 * 10 9 7 38 38 H 1.08998 * 109.47077 * 299.99698 * 11 9 7 39 39 H 1.08998 * 109.47396 * 59.99738 * 11 9 7 40 40 H 1.08992 * 109.47273 * 179.97438 * 12 11 9 41 41 H 1.09008 * 109.46515 * 299.99599 * 12 11 9 42 42 H 1.08998 * 109.47486 * 59.99463 * 12 11 9 43 43 H 1.09001 * 109.47142 * 54.72202 * 13 9 7 44 44 H 1.09003 * 109.47160 * 174.72281 * 13 9 7 45 45 H 1.08993 * 109.47063 * 59.99928 * 14 13 9 46 46 H 1.09001 * 109.47039 * 180.02562 * 14 13 9 47 47 H 1.09001 * 109.47050 * 299.99988 * 14 13 9 48 48 H 1.08996 * 109.58889 * 173.39722 * 15 6 5 49 49 H 1.09006 * 109.58562 * 293.67789 * 15 6 5 50 50 H 1.08999 * 109.49583 * 65.31259 * 16 15 6 51 51 H 1.08997 * 109.50022 * 185.38453 * 16 15 6 52 52 H 0.97003 * 120.00648 * 264.91680 * 19 17 16 53 53 H 0.96997 * 120.00331 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9819 -0.8417 5 6 1.6364 2.1275 1.3094 6 7 2.2429 3.4651 1.3498 7 6 1.4831 4.5574 1.5646 8 8 0.2772 4.4521 1.6393 9 6 2.1320 5.9095 1.7119 10 6 2.7865 6.3080 0.3877 11 6 1.0714 6.9458 2.0887 12 6 1.7300 8.3188 2.2376 13 6 3.1968 5.8475 2.8088 14 6 2.5252 5.5786 4.1569 15 6 3.6934 3.5894 1.1513 16 6 4.0739 2.8880 -0.1564 17 6 3.5654 1.4450 -0.1241 18 1 4.0000 0.9263 0.7304 19 7 3.9556 0.7615 -1.3597 20 6 5.1939 0.1857 -1.4619 21 1 5.8829 0.2358 -0.6317 22 6 5.5638 -0.4615 -2.6329 23 7 4.7243 -0.5222 -3.6447 24 14 7.2532 -1.2464 -2.7726 25 1 8.0012 -1.0396 -1.5065 26 1 7.1033 -2.7016 -3.0276 27 1 7.9981 -0.6212 -3.8948 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 0.5511 2.2169 1.3557 34 1 1.9908 1.5376 2.1548 35 1 2.0171 6.6198 -0.3187 36 1 3.4788 7.1325 0.5581 37 1 3.3301 5.4557 -0.0201 38 1 0.3128 6.9901 1.3073 39 1 0.6050 6.6619 3.0321 40 1 0.9744 9.0571 2.5057 41 1 2.4889 8.2748 3.0190 42 1 2.1961 8.6025 1.2941 43 1 3.9006 5.0452 2.5870 44 1 3.7302 6.7972 2.8516 45 1 1.9919 4.6290 4.1142 46 1 3.2838 5.5348 4.9385 47 1 1.8214 6.3809 4.3787 48 1 3.9653 4.6433 1.0932 49 1 4.2177 3.1223 1.9850 50 1 3.6208 3.4141 -0.9966 51 1 5.1582 2.8897 -0.2680 52 1 3.3369 0.7168 -2.1055 53 1 4.9826 -0.9747 -4.4629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037982345.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:24 Heat of formation + Delta-G solvation = -36.836351 kcal Electronic energy + Delta-G solvation = -28396.301630 eV Core-core repulsion = 24881.794933 eV Total energy + Delta-G solvation = -3514.506697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93569 -38.20881 -36.70121 -34.76168 -33.76045 -31.74914 -31.31814 -30.27408 -29.44655 -28.35677 -25.73424 -24.59584 -24.08303 -23.38327 -22.82021 -20.93291 -20.59055 -19.48822 -18.48338 -17.10347 -16.43958 -16.16945 -15.54665 -15.26646 -14.94016 -14.66845 -14.11247 -13.87635 -13.70352 -13.50594 -13.33931 -13.21817 -13.02138 -12.96426 -12.65435 -12.62031 -12.23584 -12.16345 -12.00589 -11.74562 -11.61035 -11.55070 -11.27577 -11.19634 -11.06294 -10.93646 -10.86175 -10.68498 -10.61841 -10.36985 -10.24634 -10.18673 -10.10855 -9.73520 -9.58505 -9.37317 -8.89977 -8.39248 -6.97118 -5.79003 -3.07609 2.78017 3.15871 3.40660 3.46412 3.48707 4.38987 4.49498 4.56177 4.70691 4.90402 5.03840 5.07013 5.19638 5.24189 5.25942 5.28465 5.34234 5.41061 5.46806 5.48708 5.55436 5.57065 5.62326 5.66058 5.68218 5.70245 5.74136 5.79596 5.89645 5.91065 5.97349 5.99844 6.05228 6.06144 6.13952 6.14863 6.21000 6.32518 6.33828 6.39334 6.42066 6.47452 6.60889 6.70440 6.83992 6.97139 7.06785 7.60881 7.67715 8.33830 8.39207 9.50772 10.08517 10.43364 11.43493 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.003817 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.248033 B = 7333.806124 C = 8205.993302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.603 5.603 7 C 0.526 3.474 8 O -0.550 6.550 9 C -0.077 4.077 10 C -0.157 4.157 11 C -0.100 4.100 12 C -0.154 4.154 13 C -0.132 4.132 14 C -0.155 4.155 15 C 0.087 3.913 16 C -0.153 4.153 17 C 0.184 3.816 18 H 0.047 0.953 19 N -0.720 5.720 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.100 0.900 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.384 0.616 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 13.799 13.351 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.335 5.335 7 C 0.315 3.685 8 O -0.428 6.428 9 C -0.080 4.080 10 C -0.214 4.214 11 C -0.138 4.138 12 C -0.211 4.211 13 C -0.169 4.169 14 C -0.212 4.212 15 C -0.036 4.036 16 C -0.194 4.194 17 C 0.074 3.926 18 H 0.065 0.935 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.117 0.883 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.094 0.906 52 H 0.218 0.782 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.233 13.643 13.408 19.831 hybrid contribution 0.874 -0.526 -0.522 1.146 sum -4.359 13.117 12.886 18.897 Atomic orbital electron populations 1.21839 0.96835 1.00973 1.01296 1.21451 0.94358 0.95788 1.03391 1.21765 0.97571 0.96188 0.96819 0.91292 1.21723 0.99391 0.81693 0.97635 1.48076 1.08354 1.06597 1.70459 1.20486 0.86868 0.85700 0.75487 1.90643 1.14393 1.86253 1.51499 1.20797 0.97003 0.92894 0.97288 1.22218 1.01193 1.02710 0.95325 1.21404 0.96643 0.93137 1.02583 1.21880 1.00774 0.96530 1.01939 1.22077 0.97425 1.03409 0.93992 1.21848 1.00734 1.02009 0.96609 1.22435 0.79881 1.02326 0.98918 1.22709 1.02105 0.99367 0.95209 1.20168 0.90806 0.90503 0.91129 0.93529 1.42425 1.16449 1.64452 1.12741 1.19257 0.91759 1.27250 0.98574 0.91214 1.24718 0.98095 1.01572 0.96442 1.69665 1.35157 1.48405 1.04740 0.86171 0.84076 0.78916 0.77335 1.20603 1.21936 1.21958 0.93210 0.93015 0.93251 0.92525 0.89838 0.89290 0.91903 0.91904 0.91289 0.90511 0.91396 0.91190 0.92815 0.92441 0.92446 0.89814 0.90741 0.92813 0.92609 0.92185 0.88263 0.91703 0.92178 0.90625 0.78219 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 37.16 0.36 -1.80 16 2 C -0.11 -1.83 5.31 -26.73 -0.14 -1.97 16 3 C -0.10 -1.71 1.92 -90.50 -0.17 -1.88 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.75 5.33 -3.71 -0.02 1.73 16 6 N -0.60 -8.43 2.96 -172.76 -0.51 -8.94 16 7 C 0.53 7.58 5.47 -10.98 -0.06 7.52 16 8 O -0.55 -9.71 15.40 5.56 0.09 -9.63 16 9 C -0.08 -0.84 0.30 -155.66 -0.05 -0.89 16 10 C -0.16 -1.61 7.24 37.15 0.27 -1.34 16 11 C -0.10 -1.05 3.74 -26.73 -0.10 -1.15 16 12 C -0.15 -1.23 9.24 37.16 0.34 -0.89 16 13 C -0.13 -1.21 4.09 -26.73 -0.11 -1.32 16 14 C -0.15 -1.44 9.23 37.16 0.34 -1.10 16 15 C 0.09 1.11 3.80 -3.71 -0.01 1.09 16 16 C -0.15 -2.48 5.46 -26.61 -0.15 -2.62 16 17 C 0.18 3.42 2.19 -67.89 -0.15 3.27 16 18 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 19 N -0.72 -17.02 4.33 -53.39 -0.23 -17.25 16 20 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 21 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 24 Si 0.90 21.84 29.55 -169.99 -5.02 16.82 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.65 6.70 -51.93 -0.35 0.31 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.63 7.22 -51.93 -0.37 1.25 16 33 H 0.09 1.39 5.72 -51.93 -0.30 1.10 16 34 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.07 0.56 7.17 -51.93 -0.37 0.19 16 37 H 0.08 0.86 4.74 -51.93 -0.25 0.61 16 38 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 39 H 0.07 0.78 6.34 -51.93 -0.33 0.45 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.42 6.55 -51.92 -0.34 0.08 16 42 H 0.06 0.44 6.80 -51.93 -0.35 0.08 16 43 H 0.08 0.77 4.43 -51.93 -0.23 0.55 16 44 H 0.07 0.57 6.64 -51.93 -0.34 0.22 16 45 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.54 6.34 -51.93 -0.33 0.21 16 48 H 0.10 1.07 2.88 -51.93 -0.15 0.92 16 49 H 0.06 0.77 7.97 -51.93 -0.41 0.36 16 50 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 51 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 52 H 0.38 9.86 7.51 -40.82 -0.31 9.55 16 53 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -29.94 382.78 -8.49 -38.43 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -9.41 Total: 9.71 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 0.11 Total: -8.20 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.02 Total: -52.90 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.94 -8.49 -38.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037982345.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.594 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds