Wall clock time and date at job start Fri Apr 10 2020 22:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47229 * 2 1 4 4 H 1.08999 * 109.49238 * 305.00391 * 3 2 1 5 5 C 1.53191 * 109.49631 * 65.06099 * 3 2 1 6 6 N 1.46925 * 108.77441 * 174.58721 * 5 3 2 7 7 C 1.34777 * 120.62820 * 126.37467 * 6 5 3 8 8 O 1.21273 * 120.00201 * 355.16271 * 7 6 5 9 9 C 1.50704 * 119.99511 * 175.16869 * 7 6 5 10 10 C 1.52994 * 109.47174 * 65.80228 * 9 7 6 11 11 C 1.53002 * 109.46702 * 185.80172 * 9 7 6 12 12 C 1.53001 * 109.47088 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47255 * 305.79967 * 9 7 6 14 14 C 1.53002 * 109.47135 * 294.72270 * 13 9 7 15 15 C 1.46928 * 118.74002 * 306.39322 * 6 5 3 16 16 C 1.53195 * 108.77535 * 53.60739 * 15 6 5 17 17 C 1.53036 * 109.33831 * 305.38322 * 16 15 6 18 18 H 1.08997 * 109.43517 * 301.30839 * 17 16 15 19 19 N 1.46499 * 109.48700 * 181.35047 * 17 16 15 20 20 C 1.36946 * 119.99994 * 84.91374 * 19 17 16 21 21 H 1.08004 * 119.99392 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99984 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00211 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99913 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46863 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47072 * 119.99639 * 24 22 20 27 27 H 1.48497 * 109.46966 * 239.99804 * 24 22 20 28 28 H 1.09007 * 109.47410 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47158 * 59.99961 * 1 2 3 30 30 H 1.08997 * 109.47372 * 299.99743 * 1 2 3 31 31 H 1.09005 * 109.47158 * 120.00039 * 2 1 3 32 32 H 1.08999 * 109.47078 * 239.99817 * 2 1 3 33 33 H 1.08995 * 109.59139 * 294.37670 * 5 3 2 34 34 H 1.09008 * 109.58732 * 54.65851 * 5 3 2 35 35 H 1.09004 * 109.47290 * 75.55314 * 10 9 7 36 36 H 1.09000 * 109.47428 * 195.55183 * 10 9 7 37 37 H 1.08998 * 109.47703 * 315.55065 * 10 9 7 38 38 H 1.08998 * 109.47077 * 299.99698 * 11 9 7 39 39 H 1.08998 * 109.47396 * 59.99738 * 11 9 7 40 40 H 1.08992 * 109.47273 * 179.97438 * 12 11 9 41 41 H 1.09008 * 109.46515 * 299.99599 * 12 11 9 42 42 H 1.08998 * 109.47486 * 59.99463 * 12 11 9 43 43 H 1.09001 * 109.47142 * 54.72202 * 13 9 7 44 44 H 1.09003 * 109.47160 * 174.72281 * 13 9 7 45 45 H 1.08993 * 109.47063 * 59.99928 * 14 13 9 46 46 H 1.09001 * 109.47039 * 180.02562 * 14 13 9 47 47 H 1.09001 * 109.47050 * 299.99988 * 14 13 9 48 48 H 1.08996 * 109.58889 * 173.39722 * 15 6 5 49 49 H 1.09006 * 109.58562 * 293.67789 * 15 6 5 50 50 H 1.08999 * 109.49583 * 65.31259 * 16 15 6 51 51 H 1.08997 * 109.50022 * 185.38453 * 16 15 6 52 52 H 0.97003 * 120.00648 * 264.91680 * 19 17 16 53 53 H 0.96997 * 120.00331 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9819 -0.8417 5 6 1.6364 2.1275 1.3094 6 7 2.2429 3.4651 1.3498 7 6 1.4831 4.5574 1.5646 8 8 0.2772 4.4521 1.6393 9 6 2.1320 5.9095 1.7119 10 6 2.7865 6.3080 0.3877 11 6 1.0714 6.9458 2.0887 12 6 1.7300 8.3188 2.2376 13 6 3.1968 5.8475 2.8088 14 6 2.5252 5.5786 4.1569 15 6 3.6934 3.5894 1.1513 16 6 4.0739 2.8880 -0.1564 17 6 3.5654 1.4450 -0.1241 18 1 4.0000 0.9263 0.7304 19 7 3.9556 0.7615 -1.3597 20 6 5.1939 0.1857 -1.4619 21 1 5.8829 0.2358 -0.6317 22 6 5.5638 -0.4615 -2.6329 23 7 4.7243 -0.5222 -3.6447 24 14 7.2532 -1.2464 -2.7726 25 1 8.0012 -1.0396 -1.5065 26 1 7.1033 -2.7016 -3.0276 27 1 7.9981 -0.6212 -3.8948 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 0.5511 2.2169 1.3557 34 1 1.9908 1.5376 2.1548 35 1 2.0171 6.6198 -0.3187 36 1 3.4788 7.1325 0.5581 37 1 3.3301 5.4557 -0.0201 38 1 0.3128 6.9901 1.3073 39 1 0.6050 6.6619 3.0321 40 1 0.9744 9.0571 2.5057 41 1 2.4889 8.2748 3.0190 42 1 2.1961 8.6025 1.2941 43 1 3.9006 5.0452 2.5870 44 1 3.7302 6.7972 2.8516 45 1 1.9919 4.6290 4.1142 46 1 3.2838 5.5348 4.9385 47 1 1.8214 6.3809 4.3787 48 1 3.9653 4.6433 1.0932 49 1 4.2177 3.1223 1.9850 50 1 3.6208 3.4141 -0.9966 51 1 5.1582 2.8897 -0.2680 52 1 3.3369 0.7168 -2.1055 53 1 4.9826 -0.9747 -4.4629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037982345.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:23 Heat of formation + Delta-G solvation = -53.405287 kcal Electronic energy + Delta-G solvation = -28397.020113 eV Core-core repulsion = 24881.794933 eV Total energy + Delta-G solvation = -3515.225180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.02579 -39.50410 -37.76102 -36.22041 -35.29521 -33.45031 -32.08855 -31.23326 -30.98822 -29.58884 -27.03121 -25.81630 -25.27962 -24.52796 -24.04595 -22.29911 -21.76571 -20.82470 -19.53939 -19.03093 -17.61131 -17.18420 -16.76895 -16.50595 -16.18843 -15.85471 -15.59511 -15.35625 -15.00483 -14.76563 -14.51663 -14.41453 -14.27390 -13.86514 -13.75023 -13.65168 -13.45441 -13.21537 -13.00318 -12.88758 -12.87412 -12.74155 -12.60538 -12.52894 -12.38749 -12.10623 -12.04275 -11.98749 -11.85081 -11.78503 -11.60088 -11.53114 -11.39982 -11.10297 -11.08780 -10.85793 -10.43845 -9.61911 -8.94400 -7.89893 -5.17440 1.49163 1.49675 1.59091 1.65483 2.04230 2.58857 3.41338 3.44265 3.68397 3.76358 3.79700 3.90992 3.98631 4.04622 4.12659 4.24616 4.32871 4.34860 4.41318 4.45253 4.51109 4.55519 4.61277 4.65304 4.70273 4.74137 4.79799 4.81436 4.84087 4.90211 4.93362 4.97342 5.01797 5.05875 5.10501 5.14521 5.17583 5.27179 5.27748 5.31342 5.31995 5.36701 5.41009 5.46757 5.53315 5.59216 5.61106 5.68919 6.31320 6.47639 7.19745 7.37976 8.13900 8.37348 9.33900 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.003817 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.248033 B = 7333.806124 C = 8205.993302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.047 0.953 5 C 0.124 3.876 6 N -0.604 5.604 7 C 0.521 3.479 8 O -0.588 6.588 9 C -0.073 4.073 10 C -0.156 4.156 11 C -0.098 4.098 12 C -0.148 4.148 13 C -0.129 4.129 14 C -0.153 4.153 15 C 0.095 3.905 16 C -0.143 4.143 17 C 0.180 3.820 18 H 0.047 0.953 19 N -0.731 5.731 20 C -0.228 4.228 21 H 0.079 0.921 22 C -0.076 4.076 23 N -0.971 5.971 24 Si 0.966 3.034 25 H -0.263 1.263 26 H -0.299 1.299 27 H -0.297 1.297 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.126 0.874 49 H 0.084 0.916 50 H 0.044 0.956 51 H 0.069 0.931 52 H 0.370 0.630 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 15.512 15.677 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.066 0.934 5 C 0.001 3.999 6 N -0.335 5.335 7 C 0.311 3.689 8 O -0.468 6.468 9 C -0.076 4.076 10 C -0.213 4.213 11 C -0.136 4.136 12 C -0.205 4.205 13 C -0.166 4.166 14 C -0.211 4.211 15 C -0.026 4.026 16 C -0.184 4.184 17 C 0.071 3.929 18 H 0.065 0.935 19 N -0.370 5.370 20 C -0.360 4.360 21 H 0.096 0.904 22 C -0.268 4.268 23 N -0.623 5.623 24 Si 0.796 3.204 25 H -0.187 1.187 26 H -0.227 1.227 27 H -0.225 1.225 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.144 0.856 49 H 0.102 0.898 50 H 0.063 0.937 51 H 0.088 0.912 52 H 0.201 0.799 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.750 15.386 15.791 22.364 hybrid contribution 0.335 -1.042 -1.195 1.620 sum -3.415 14.344 14.596 20.747 Atomic orbital electron populations 1.21770 0.95038 1.01865 1.01546 1.21358 0.95939 0.95311 1.01918 1.21609 0.95998 0.96317 0.97227 0.93401 1.21591 0.99120 0.82388 0.96774 1.48149 1.08904 1.06273 1.70176 1.21216 0.86506 0.86860 0.74345 1.90623 1.16180 1.86888 1.53140 1.20856 0.97550 0.90601 0.98563 1.22232 1.01304 1.03286 0.94513 1.21372 0.96275 0.94677 1.01251 1.21850 1.01134 0.94700 1.02834 1.22110 0.96686 1.04926 0.92872 1.21835 1.01076 1.00829 0.97315 1.22504 0.79103 1.03714 0.97326 1.22503 1.01394 0.97609 0.96891 1.20397 0.92138 0.91429 0.88903 0.93492 1.42601 1.15488 1.65011 1.13884 1.19637 0.92484 1.25550 0.98295 0.90351 1.25467 1.01510 1.03261 0.96567 1.69827 1.37041 1.50195 1.05202 0.85167 0.80307 0.77285 0.77593 1.18745 1.22671 1.22502 0.92024 0.93782 0.91928 0.91682 0.93454 0.90048 0.90299 0.92859 0.88372 0.91495 0.93560 0.92173 0.92264 0.90984 0.91724 0.89583 0.88088 0.95157 0.90950 0.91956 0.85635 0.89766 0.93667 0.91191 0.79885 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.67 71.98 0.70 -3.41 16 2 C -0.11 -3.56 5.31 30.59 0.16 -3.40 16 3 C -0.09 -3.05 1.92 -10.72 -0.02 -3.07 16 4 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.12 3.58 5.33 86.36 0.46 4.04 16 6 N -0.60 -16.13 2.96 -818.89 -2.43 -18.56 16 7 C 0.52 14.54 5.47 87.66 0.48 15.02 16 8 O -0.59 -20.87 15.40 -3.01 -0.05 -20.91 16 9 C -0.07 -1.44 0.30 -52.93 -0.02 -1.46 16 10 C -0.16 -2.82 7.24 71.98 0.52 -2.30 16 11 C -0.10 -1.92 3.74 30.60 0.11 -1.80 16 12 C -0.15 -1.93 9.24 71.98 0.67 -1.26 16 13 C -0.13 -1.90 4.09 30.60 0.12 -1.78 16 14 C -0.15 -2.44 9.23 71.98 0.66 -1.77 16 15 C 0.10 2.21 3.80 86.36 0.33 2.54 16 16 C -0.14 -4.51 5.46 30.67 0.17 -4.35 16 17 C 0.18 6.66 2.19 45.02 0.10 6.75 16 18 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 19 N -0.73 -35.23 4.33 -322.82 -1.40 -36.63 16 20 C -0.23 -12.06 9.93 84.03 0.83 -11.22 16 21 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 22 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 23 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 24 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 28 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.06 1.61 6.70 -2.39 -0.02 1.59 16 31 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.05 1.92 7.22 -2.39 -0.02 1.91 16 33 H 0.08 2.52 5.72 -2.39 -0.01 2.51 16 34 H 0.08 2.04 8.14 -2.38 -0.02 2.03 16 35 H 0.05 1.07 8.05 -2.39 -0.02 1.05 16 36 H 0.10 1.21 7.17 -2.39 -0.02 1.19 16 37 H 0.07 1.35 4.74 -2.39 -0.01 1.34 16 38 H 0.05 1.09 8.04 -2.39 -0.02 1.07 16 39 H 0.06 1.29 6.34 -2.39 -0.02 1.27 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.74 6.55 -2.38 -0.02 0.73 16 42 H 0.06 0.76 6.80 -2.39 -0.02 0.75 16 43 H 0.09 1.24 4.43 -2.39 -0.01 1.23 16 44 H 0.10 1.02 6.64 -2.39 -0.02 1.01 16 45 H 0.03 0.62 7.39 -2.39 -0.02 0.60 16 46 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 0.96 6.34 -2.39 -0.02 0.94 16 48 H 0.13 2.31 2.88 -2.39 -0.01 2.31 16 49 H 0.08 1.71 7.97 -2.38 -0.02 1.69 16 50 H 0.04 1.56 7.87 -2.39 -0.02 1.54 16 51 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.37 19.80 7.51 -92.71 -0.70 19.10 16 53 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -66.72 382.78 4.38 -62.34 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.19 Total: 36.37 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 5.75 Total: -11.27 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -3.54 Total: -113.78 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -66.72 4.38 -62.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037982345.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.933 kcal (2) G-P(sol) polarization free energy of solvation -66.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds