Wall clock time and date at job start Fri Apr 10 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47389 * 119.99759 * 3 2 1 6 6 H 1.48496 * 109.47094 * 240.00103 * 3 2 1 7 7 C 1.37874 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00060 * 17.16044 * 7 2 1 9 9 C 1.50705 * 119.99753 * 197.14989 * 7 2 1 10 10 H 1.08999 * 109.47275 * 305.67034 * 9 7 2 11 11 C 1.52997 * 109.47063 * 65.67854 * 9 7 2 12 12 Cl 1.80293 * 109.46895 * 185.32687 * 11 9 7 13 13 O 1.42902 * 109.46902 * 185.67788 * 9 7 2 14 14 C 1.35588 * 117.00259 * 139.71879 * 13 9 7 15 15 C 1.38328 * 121.02839 * 5.57217 * 14 13 9 16 16 C 1.38931 * 119.71444 * 179.76810 * 15 14 13 17 17 N 1.31235 * 121.82504 * 0.49962 * 16 15 14 18 18 C 1.33732 * 121.62351 * 359.76126 * 17 16 15 19 19 C 1.40678 * 120.99849 * 179.97438 * 18 17 16 20 20 Cl 1.73596 * 120.13770 * 0.02562 * 19 18 17 21 21 C 1.36218 * 119.73306 * 180.02562 * 19 18 17 22 22 C 1.39283 * 121.03311 * 359.97438 * 21 19 18 23 23 C 1.36217 * 120.84065 * 0.02562 * 22 21 19 24 24 C 1.40254 * 119.65413 * 359.96110 * 23 22 21 25 25 H 0.97005 * 120.00193 * 174.88780 * 1 2 3 26 26 H 1.09001 * 109.46824 * 305.32435 * 11 9 7 27 27 H 1.08998 * 109.47389 * 65.32103 * 11 9 7 28 28 H 1.08000 * 120.14498 * 359.97438 * 15 14 13 29 29 H 1.07999 * 119.08950 * 180.26658 * 16 15 14 30 30 H 1.08001 * 119.48564 * 179.97438 * 21 19 18 31 31 H 1.07999 * 119.57818 * 180.02562 * 22 21 19 32 32 H 1.08002 * 120.16877 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.5005 -2.1087 -0.2750 9 6 3.4613 -1.2228 0.3854 10 1 4.0142 -0.5144 -0.2315 11 6 3.6071 -0.8383 1.8591 12 17 5.3565 -0.7202 2.2790 13 8 3.9816 -2.5382 0.1826 14 6 5.2290 -2.6330 -0.3403 15 6 6.0006 -1.5048 -0.5530 16 6 7.2771 -1.6339 -1.0858 17 7 7.7780 -2.8037 -1.4067 18 6 7.0857 -3.9345 -1.2327 19 6 7.6353 -5.1816 -1.5818 20 17 9.2352 -5.2728 -2.2493 21 6 6.9070 -6.3173 -1.3940 22 6 5.6218 -6.2660 -0.8595 23 6 5.0578 -5.0763 -0.5100 24 6 5.7793 -3.8870 -0.6894 25 1 -0.4851 -0.8367 -0.0749 26 1 3.1260 0.1243 2.0327 27 1 3.1345 -1.5981 2.4814 28 1 5.6136 -0.5280 -0.3030 29 1 7.8724 -0.7467 -1.2437 30 1 7.3327 -7.2725 -1.6639 31 1 5.0655 -7.1811 -0.7202 32 1 4.0607 -5.0492 -0.0960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229603075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:31 Heat of formation + Delta-G solvation = -4.639401 kcal Electronic energy + Delta-G solvation = -20790.265079 eV Core-core repulsion = 17381.688741 eV Total energy + Delta-G solvation = -3408.576338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 311.022 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83689 -38.61890 -36.89828 -36.21107 -35.38616 -33.72792 -32.07267 -30.72908 -30.11331 -29.35583 -25.10994 -24.08909 -23.76869 -22.07056 -20.89794 -18.42651 -18.19110 -17.43530 -17.13388 -15.56463 -15.23335 -15.02429 -14.63497 -14.29098 -13.95910 -13.76347 -13.71053 -13.63159 -13.14507 -12.67645 -12.43147 -12.24045 -11.85795 -11.63128 -11.45248 -11.21289 -11.01303 -10.78828 -10.63422 -10.34850 -10.11647 -9.76707 -9.48778 -9.33397 -9.02493 -8.74953 -8.70663 -7.62988 -6.99118 -4.65926 0.54586 0.90262 2.13229 2.21242 2.80751 3.01490 3.02917 3.13380 3.25449 3.56168 4.03848 4.21768 4.35401 4.73201 4.81479 4.89040 5.02125 5.10683 5.26980 5.45335 5.52705 5.61629 5.69184 5.79635 5.94003 6.01472 6.10126 6.25071 6.37562 6.50656 6.54488 6.81567 7.16465 7.70559 7.93879 8.13537 8.45381 9.04200 10.41858 Molecular weight = 311.02amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.004445 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.009698 B = 6296.999654 C = 6712.657944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.043 3.957 3 Si 1.025 2.975 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.613 4.613 8 H 0.077 0.923 9 C 0.186 3.814 10 H 0.046 0.954 11 C -0.052 4.052 12 Cl -0.226 7.226 13 O -0.284 6.284 14 C 0.219 3.781 15 C -0.279 4.279 16 C 0.176 3.824 17 N -0.508 5.508 18 C 0.166 3.834 19 C -0.030 4.030 20 Cl -0.057 7.057 21 C -0.081 4.081 22 C -0.140 4.140 23 C -0.054 4.054 24 C -0.123 4.123 25 H 0.277 0.723 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.158 0.842 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.355 -6.832 -0.586 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.166 4.166 3 Si 0.851 3.149 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.650 4.650 8 H 0.095 0.905 9 C 0.131 3.869 10 H 0.064 0.936 11 C -0.114 4.114 12 Cl -0.200 7.200 13 O -0.192 6.192 14 C 0.162 3.838 15 C -0.300 4.300 16 C 0.008 3.992 17 N -0.221 5.221 18 C 0.043 3.957 19 C -0.058 4.058 20 Cl -0.028 7.028 21 C -0.102 4.102 22 C -0.158 4.158 23 C -0.073 4.073 24 C -0.126 4.126 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.165 0.835 29 H 0.175 0.825 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.014 -5.467 -0.823 13.225 hybrid contribution -0.571 -1.310 0.356 1.473 sum 11.443 -6.777 -0.467 13.308 Atomic orbital electron populations 1.70850 1.06508 1.31691 1.41443 1.25771 0.96148 1.02026 0.92696 0.84293 0.76195 0.76228 0.78179 1.19583 1.19406 1.19714 1.21901 0.92244 0.97752 1.53140 0.90519 1.20967 0.96447 0.78888 0.90613 0.93643 1.26311 0.79005 1.05447 1.00661 1.98674 1.27161 1.99060 1.95085 1.86089 1.25011 1.34293 1.73849 1.19354 0.85209 0.92484 0.86764 1.22285 0.97595 0.99949 1.10169 1.22599 0.91830 0.95127 0.89670 1.68076 1.35538 0.97496 1.21039 1.18242 0.89387 0.92230 0.95853 1.20273 0.88487 0.92754 1.04263 1.98343 1.22252 1.98427 1.83728 1.20788 0.94306 0.97166 0.97927 1.20703 0.94989 0.98356 1.01786 1.21097 0.99764 0.90970 0.95443 1.18171 0.95531 0.92833 1.06107 0.91217 0.87451 0.88638 0.83516 0.82494 0.84702 0.84867 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.79 13.70 55.43 0.76 -23.04 16 2 C 0.04 1.09 5.31 -17.82 -0.09 0.99 16 3 Si 1.03 21.49 26.29 -169.99 -4.47 17.02 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.27 -5.05 5.71 56.52 0.32 -4.73 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.61 -15.32 9.15 -34.44 -0.32 -15.63 16 8 H 0.08 2.10 8.06 -52.49 -0.42 1.68 16 9 C 0.19 3.98 1.72 -27.88 -0.05 3.93 16 10 H 0.05 0.96 4.10 -51.93 -0.21 0.75 16 11 C -0.05 -1.00 6.01 37.16 0.22 -0.78 16 12 Cl -0.23 -4.00 26.08 -51.86 -1.35 -5.35 16 13 O -0.28 -5.87 8.99 -18.46 -0.17 -6.03 16 14 C 0.22 4.11 6.29 -38.37 -0.24 3.87 16 15 C -0.28 -4.85 7.47 -39.29 -0.29 -5.14 16 16 C 0.18 2.78 11.13 -17.55 -0.20 2.58 16 17 N -0.51 -8.68 9.81 -11.04 -0.11 -8.79 16 18 C 0.17 2.83 6.60 -84.85 -0.56 2.27 16 19 C -0.03 -0.45 6.33 -39.39 -0.25 -0.70 16 20 Cl -0.06 -0.77 28.52 -51.86 -1.48 -2.25 16 21 C -0.08 -1.00 9.71 -39.92 -0.39 -1.39 16 22 C -0.14 -1.72 9.96 -39.92 -0.40 -2.12 16 23 C -0.05 -0.82 9.58 -39.55 -0.38 -1.20 16 24 C -0.12 -2.15 5.75 -106.70 -0.61 -2.77 16 25 H 0.28 7.52 8.73 -40.82 -0.36 7.16 16 26 H 0.11 2.09 4.83 -51.93 -0.25 1.84 16 27 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 28 H 0.15 2.53 5.06 -52.49 -0.27 2.27 16 29 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 2.07 7.67 -52.49 -0.40 1.67 16 LS Contribution 299.08 15.07 4.51 4.51 Total: -1.00 -26.88 299.08 -8.34 -35.22 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -2.48 Total: 4.79 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -3.55 Total: -16.07 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.65 Total: -31.83 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.17 Total: -6.03 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.47 Total: 17.02 kcal Atomic # 17 Polarization: -4.77 SS G_CDS: -2.83 Total: -7.60 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.88 -8.34 -35.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229603075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.582 kcal (2) G-P(sol) polarization free energy of solvation -26.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds