Wall clock time and date at job start Fri Apr 10 2020 22:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99819 * 2 1 4 4 H 1.48505 * 109.47170 * 269.99587 * 3 2 1 5 5 H 1.48494 * 109.47452 * 29.99771 * 3 2 1 6 6 H 1.48501 * 109.46991 * 149.99959 * 3 2 1 7 7 C 1.37882 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99788 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99780 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46956 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47118 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99963 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00236 * 359.97438 * 12 11 10 14 14 C 1.47604 * 120.00085 * 179.97438 * 12 11 10 15 15 C 1.39717 * 120.09711 * 359.97438 * 14 12 11 16 16 C 1.37813 * 119.95304 * 180.08192 * 15 14 12 17 17 Cl 1.73602 * 119.87608 * 180.02562 * 16 15 14 18 18 C 1.39112 * 120.24775 * 0.02562 * 16 15 14 19 19 C 1.39204 * 120.04253 * 359.84776 * 18 16 15 20 20 C 1.38321 * 119.97194 * 0.20073 * 19 18 16 21 21 O 1.36155 * 120.76081 * 180.21818 * 19 18 16 22 22 C 1.43170 * 116.70162 * 342.74839 * 21 19 18 23 23 C 1.53468 * 108.22969 * 46.20758 * 22 21 19 24 24 O 1.35992 * 119.23414 * 179.65126 * 18 16 15 25 25 H 0.97001 * 120.00524 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46973 * 60.00674 * 9 7 2 27 27 H 1.08995 * 109.47555 * 299.99976 * 9 7 2 28 28 H 1.08995 * 109.47135 * 59.99737 * 10 9 7 29 29 H 1.09002 * 109.46715 * 300.00570 * 10 9 7 30 30 H 0.97001 * 120.00249 * 0.02562 * 11 10 9 31 31 H 1.08003 * 120.01947 * 0.05227 * 15 14 12 32 32 H 1.08004 * 120.01243 * 179.90988 * 20 19 18 33 33 H 1.09002 * 109.71441 * 165.89598 * 22 21 19 34 34 H 1.09005 * 109.71040 * 286.53346 * 22 21 19 35 35 H 1.08995 * 109.70404 * 180.51937 * 23 22 21 36 36 H 1.08998 * 109.74739 * 59.91659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1604 -3.8036 0.0008 13 8 5.5525 -4.8567 0.0018 14 6 7.6364 -3.8036 0.0002 15 6 8.3371 -2.5948 -0.0015 16 6 9.7152 -2.5983 -0.0036 17 17 10.5837 -1.0952 -0.0051 18 6 10.4129 -3.8018 -0.0047 19 6 9.7200 -5.0091 -0.0004 20 6 8.3368 -5.0120 0.0008 21 8 10.3881 -6.1954 0.0031 22 6 11.7679 -6.1579 -0.3772 23 6 12.4380 -4.9917 0.3619 24 8 11.7727 -3.7811 -0.0141 25 1 -0.4851 0.8400 -0.0004 26 1 3.8751 -0.6796 0.8895 27 1 3.8745 -0.6808 -0.8905 28 1 3.6579 -3.1506 -0.8896 29 1 3.6585 -3.1502 0.8903 30 1 5.9715 -1.7965 0.0005 31 1 7.7990 -1.6584 -0.0015 32 1 7.7985 -5.9483 0.0027 33 1 12.2512 -7.0948 -0.1004 34 1 11.8486 -6.0058 -1.4535 35 1 13.4899 -4.9352 0.0822 36 1 12.3514 -5.1394 1.4383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701281052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:06 Heat of formation + Delta-G solvation = -91.179742 kcal Electronic energy + Delta-G solvation = -22485.279551 eV Core-core repulsion = 18768.074472 eV Total energy + Delta-G solvation = -3717.205079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74942 -39.75111 -37.90993 -37.65378 -36.48638 -35.10724 -32.91305 -31.87027 -30.85787 -30.27484 -28.88701 -25.78630 -24.95714 -23.19906 -22.27217 -20.88267 -20.30716 -19.19754 -18.10094 -17.86223 -16.92729 -16.58396 -15.97837 -15.72255 -15.35985 -15.13403 -14.94828 -14.68565 -14.47506 -14.17020 -14.08237 -13.74050 -13.35060 -13.08974 -12.64111 -12.46155 -12.30914 -11.58264 -11.50584 -11.36048 -11.27453 -11.12100 -10.98315 -10.41880 -10.34652 -9.98059 -9.69878 -9.33484 -8.91148 -8.74311 -8.62031 -8.48911 -6.11458 -4.11846 0.41829 0.73398 1.74316 2.40345 2.64038 2.72815 3.25606 3.33520 3.34322 3.45793 3.57708 3.70162 4.16297 4.29897 4.37006 4.37553 4.58194 4.65626 4.79362 4.86298 4.96050 5.11542 5.21476 5.42507 5.55694 5.83845 5.90686 6.11308 6.17548 6.32968 6.53132 6.64311 6.83502 7.10071 7.20928 7.64961 7.77722 8.38321 8.45367 8.92794 9.48483 11.01508 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.003033 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.418178 B = 9229.307603 C =10468.530889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.129 3.871 11 N -0.717 5.717 12 C 0.555 3.445 13 O -0.536 6.536 14 C -0.111 4.111 15 C -0.075 4.075 16 C -0.039 4.039 17 Cl -0.045 7.045 18 C 0.078 3.922 19 C 0.053 3.947 20 C -0.049 4.049 21 O -0.298 6.298 22 C 0.019 3.981 23 C 0.018 3.982 24 O -0.293 6.293 25 H 0.265 0.735 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.396 0.604 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.192 -8.238 0.012 30.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.061 4.061 10 C 0.008 3.992 11 N -0.367 5.367 12 C 0.341 3.659 13 O -0.415 6.415 14 C -0.114 4.114 15 C -0.094 4.094 16 C -0.067 4.067 17 Cl -0.016 7.016 18 C 0.031 3.969 19 C 0.008 3.992 20 C -0.069 4.069 21 O -0.213 6.213 22 C -0.057 4.057 23 C -0.057 4.057 24 O -0.207 6.207 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.231 0.769 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.144 0.856 34 H 0.099 0.901 35 H 0.144 0.856 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 28.688 -8.757 0.015 29.995 hybrid contribution 0.928 1.419 -0.024 1.695 sum 29.616 -7.338 -0.009 30.511 Atomic orbital electron populations 1.69899 1.06301 1.27083 1.50337 1.24998 0.94762 0.99153 0.94343 0.86763 0.80306 0.83548 0.78543 1.20192 1.21272 1.19009 1.20900 0.88566 0.94927 1.51762 0.90558 1.19813 0.98099 0.91223 0.96956 1.21594 0.75270 1.00393 1.01987 1.46263 1.09475 1.07566 1.73428 1.17863 0.85943 0.84587 0.77524 1.90794 1.69459 1.31065 1.50157 1.19734 0.94124 0.92313 1.05264 1.21073 0.91052 0.98907 0.98386 1.19908 0.91569 0.85857 1.09321 1.98386 1.76560 1.29682 1.96929 1.18677 0.83586 0.92008 1.02587 1.18516 0.91842 0.83831 1.05015 1.20592 0.89854 0.99559 0.96859 1.86396 1.23909 1.26613 1.84373 1.23706 0.80462 1.01187 1.00332 1.23738 0.98057 0.83409 1.00490 1.86370 1.14556 1.36072 1.83651 0.92528 0.95883 0.96329 0.91562 0.91549 0.76940 0.83349 0.82612 0.85606 0.90087 0.85581 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.02 -0.52 4.16 -27.88 -0.12 -0.63 16 10 C 0.13 2.58 5.61 -4.04 -0.02 2.55 16 11 N -0.72 -11.61 5.51 -61.33 -0.34 -11.95 16 12 C 0.56 9.09 7.76 -12.44 -0.10 8.99 16 13 O -0.54 -10.61 16.34 5.28 0.09 -10.53 16 14 C -0.11 -1.46 5.87 -104.99 -0.62 -2.07 16 15 C -0.07 -0.85 9.30 -39.18 -0.36 -1.22 16 16 C -0.04 -0.44 6.32 -39.41 -0.25 -0.69 16 17 Cl -0.04 -0.47 28.44 -51.86 -1.47 -1.95 16 18 C 0.08 0.87 6.50 -38.90 -0.25 0.61 16 19 C 0.05 0.60 6.48 -39.19 -0.25 0.35 16 20 C -0.05 -0.61 9.50 -39.02 -0.37 -0.99 16 21 O -0.30 -2.93 10.42 -33.00 -0.34 -3.27 16 22 C 0.02 0.10 7.26 37.40 0.27 0.38 16 23 C 0.02 0.10 7.26 37.40 0.27 0.37 16 24 O -0.29 -2.79 9.82 -32.48 -0.32 -3.11 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 27 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.40 5.31 6.49 -40.82 -0.27 5.05 16 31 H 0.15 1.44 6.39 -52.48 -0.34 1.11 16 32 H 0.16 1.98 7.64 -52.48 -0.40 1.57 16 33 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -33.29 324.31 -7.52 -40.81 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.89 Total: 0.61 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.23 Total: -5.29 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.44 Total: -38.36 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.58 Total: -16.91 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.47 Total: -1.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.29 -7.52 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701281052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.370 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds