Wall clock time and date at job start Fri Apr 10 2020 22:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99819 * 2 1 4 4 H 1.48505 * 109.47170 * 269.99587 * 3 2 1 5 5 H 1.48494 * 109.47452 * 29.99771 * 3 2 1 6 6 H 1.48501 * 109.46991 * 149.99959 * 3 2 1 7 7 C 1.37882 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99788 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99780 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46956 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47118 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99963 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00236 * 359.97438 * 12 11 10 14 14 C 1.47604 * 120.00085 * 179.97438 * 12 11 10 15 15 C 1.39717 * 120.09711 * 359.97438 * 14 12 11 16 16 C 1.37813 * 119.95304 * 180.08192 * 15 14 12 17 17 Cl 1.73602 * 119.87608 * 180.02562 * 16 15 14 18 18 C 1.39112 * 120.24775 * 0.02562 * 16 15 14 19 19 C 1.39204 * 120.04253 * 359.84776 * 18 16 15 20 20 C 1.38321 * 119.97194 * 0.20073 * 19 18 16 21 21 O 1.36155 * 120.76081 * 180.21818 * 19 18 16 22 22 C 1.43170 * 116.70162 * 342.74839 * 21 19 18 23 23 C 1.53468 * 108.22969 * 46.20758 * 22 21 19 24 24 O 1.35992 * 119.23414 * 179.65126 * 18 16 15 25 25 H 0.97001 * 120.00524 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46973 * 60.00674 * 9 7 2 27 27 H 1.08995 * 109.47555 * 299.99976 * 9 7 2 28 28 H 1.08995 * 109.47135 * 59.99737 * 10 9 7 29 29 H 1.09002 * 109.46715 * 300.00570 * 10 9 7 30 30 H 0.97001 * 120.00249 * 0.02562 * 11 10 9 31 31 H 1.08003 * 120.01947 * 0.05227 * 15 14 12 32 32 H 1.08004 * 120.01243 * 179.90988 * 20 19 18 33 33 H 1.09002 * 109.71441 * 165.89598 * 22 21 19 34 34 H 1.09005 * 109.71040 * 286.53346 * 22 21 19 35 35 H 1.08995 * 109.70404 * 180.51937 * 23 22 21 36 36 H 1.08998 * 109.74739 * 59.91659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1604 -3.8036 0.0008 13 8 5.5525 -4.8567 0.0018 14 6 7.6364 -3.8036 0.0002 15 6 8.3371 -2.5948 -0.0015 16 6 9.7152 -2.5983 -0.0036 17 17 10.5837 -1.0952 -0.0051 18 6 10.4129 -3.8018 -0.0047 19 6 9.7200 -5.0091 -0.0004 20 6 8.3368 -5.0120 0.0008 21 8 10.3881 -6.1954 0.0031 22 6 11.7679 -6.1579 -0.3772 23 6 12.4380 -4.9917 0.3619 24 8 11.7727 -3.7811 -0.0141 25 1 -0.4851 0.8400 -0.0004 26 1 3.8751 -0.6796 0.8895 27 1 3.8745 -0.6808 -0.8905 28 1 3.6579 -3.1506 -0.8896 29 1 3.6585 -3.1502 0.8903 30 1 5.9715 -1.7965 0.0005 31 1 7.7990 -1.6584 -0.0015 32 1 7.7985 -5.9483 0.0027 33 1 12.2512 -7.0948 -0.1004 34 1 11.8486 -6.0058 -1.4535 35 1 13.4899 -4.9352 0.0822 36 1 12.3514 -5.1394 1.4383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701281052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:06 Heat of formation + Delta-G solvation = -114.409063 kcal Electronic energy + Delta-G solvation = -22486.286850 eV Core-core repulsion = 18768.074472 eV Total energy + Delta-G solvation = -3718.212378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.49566 -40.96785 -38.76233 -38.45277 -37.33972 -36.70256 -34.84136 -32.86455 -31.78305 -31.70197 -29.76859 -27.10695 -26.08881 -24.27213 -23.16200 -22.62662 -21.35768 -20.05449 -19.13195 -18.85099 -18.59481 -17.54761 -16.92929 -16.77211 -16.47886 -16.21003 -16.08852 -15.82211 -15.41167 -15.30658 -15.14220 -15.03176 -14.63966 -14.54059 -14.01238 -13.38634 -13.20061 -13.05709 -13.02399 -12.25537 -12.23794 -12.12703 -12.12170 -11.92142 -11.74461 -11.64394 -11.50414 -11.12718 -10.76909 -10.15916 -9.75346 -9.39305 -8.28040 -6.35179 -0.52788 -0.13088 0.89789 1.41440 1.43784 1.50911 1.54869 1.84657 1.93328 2.26780 2.38828 2.49994 3.07296 3.10296 3.49666 3.55671 3.73988 3.88442 3.95745 4.13057 4.15926 4.35490 4.44624 4.50444 4.54220 4.60138 4.70483 4.76767 4.94351 5.06662 5.11578 5.40148 5.42543 5.64069 5.66094 6.11221 6.23690 6.49445 6.72875 7.12578 7.29355 8.88675 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.003033 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.418178 B = 9229.307603 C =10468.530889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.234 1.234 7 C -0.538 4.538 8 H 0.030 0.970 9 C -0.015 4.015 10 C 0.144 3.856 11 N -0.707 5.707 12 C 0.558 3.442 13 O -0.578 6.578 14 C -0.123 4.123 15 C -0.065 4.065 16 C -0.048 4.048 17 Cl -0.037 7.037 18 C 0.087 3.913 19 C 0.054 3.946 20 C -0.057 4.057 21 O -0.313 6.313 22 C 0.011 3.989 23 C 0.012 3.988 24 O -0.302 6.302 25 H 0.267 0.733 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.413 0.587 31 H 0.166 0.834 32 H 0.146 0.854 33 H 0.160 0.840 34 H 0.086 0.914 35 H 0.162 0.838 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.214 -6.950 0.025 33.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.157 1.157 7 C -0.576 4.576 8 H 0.048 0.952 9 C -0.053 4.053 10 C 0.020 3.980 11 N -0.359 5.359 12 C 0.346 3.654 13 O -0.459 6.459 14 C -0.126 4.126 15 C -0.084 4.084 16 C -0.075 4.075 17 Cl -0.007 7.007 18 C 0.040 3.960 19 C 0.008 3.992 20 C -0.077 4.077 21 O -0.228 6.228 22 C -0.063 4.063 23 C -0.062 4.062 24 O -0.216 6.216 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.251 0.749 31 H 0.184 0.816 32 H 0.164 0.836 33 H 0.177 0.823 34 H 0.104 0.896 35 H 0.179 0.821 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 32.772 -7.473 0.028 33.613 hybrid contribution -0.209 0.859 -0.032 0.885 sum 32.563 -6.614 -0.003 33.228 Atomic orbital electron populations 1.70073 1.08596 1.28395 1.52061 1.26070 0.95664 1.03841 0.93728 0.85573 0.79799 0.77398 0.79348 1.19008 1.21427 1.15723 1.21247 0.91552 0.93393 1.51429 0.95153 1.19679 0.94470 0.92821 0.98286 1.21127 0.77580 0.98718 1.00536 1.45962 1.07810 1.08629 1.73464 1.18271 0.87264 0.83706 0.76113 1.90772 1.70650 1.32485 1.52017 1.19324 0.91859 0.93462 1.07989 1.21147 0.91272 0.98714 0.97306 1.19971 0.91614 0.86380 1.09563 1.98388 1.76331 1.29126 1.96905 1.18756 0.84509 0.91701 1.01057 1.18424 0.91431 0.84636 1.04671 1.20559 0.90713 0.99039 0.97349 1.86383 1.26111 1.25984 1.84342 1.24103 0.78405 1.03019 1.00771 1.24133 0.99367 0.81810 1.00908 1.86367 1.13551 1.38324 1.83334 0.92370 0.94275 0.94435 0.93198 0.93213 0.74943 0.81642 0.83625 0.82267 0.89587 0.82056 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 2 C 0.00 0.23 5.47 84.66 0.46 0.69 16 3 Si 0.96 41.99 27.47 68.60 1.88 43.87 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.23 -9.06 6.54 99.48 0.65 -8.41 16 7 C -0.54 -30.43 9.66 25.60 0.25 -30.18 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.65 4.16 29.85 0.12 -0.52 16 10 C 0.14 5.78 5.61 86.38 0.48 6.26 16 11 N -0.71 -22.25 5.51 -466.20 -2.57 -24.82 16 12 C 0.56 18.29 7.76 86.72 0.67 18.96 16 13 O -0.58 -23.61 16.34 -4.00 -0.07 -23.67 16 14 C -0.12 -3.15 5.87 -20.10 -0.12 -3.27 16 15 C -0.06 -1.36 9.30 22.53 0.21 -1.15 16 16 C -0.05 -0.98 6.32 22.38 0.14 -0.83 16 17 Cl -0.04 -0.69 28.44 -2.72 -0.08 -0.76 16 18 C 0.09 1.75 6.50 22.71 0.15 1.90 16 19 C 0.05 1.15 6.48 22.52 0.15 1.30 16 20 C -0.06 -1.41 9.50 22.63 0.22 -1.20 16 21 O -0.31 -5.63 10.42 -83.10 -0.87 -6.50 16 22 C 0.01 0.09 7.26 72.14 0.52 0.62 16 23 C 0.01 0.09 7.26 72.14 0.52 0.61 16 24 O -0.30 -4.92 9.82 -81.25 -0.80 -5.71 16 25 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 26 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 27 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.41 10.08 6.49 -92.71 -0.60 9.48 16 31 H 0.17 2.75 6.39 -2.91 -0.02 2.73 16 32 H 0.15 3.84 7.64 -2.91 -0.02 3.82 16 33 H 0.16 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -74.75 324.31 2.07 -72.69 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.48 Total: 10.64 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 3.78 Total: -6.81 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -2.27 Total: -83.74 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.73 Total: -35.88 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.76 kcal Total: -74.75 2.07 -72.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701281052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.724 kcal (2) G-P(sol) polarization free energy of solvation -74.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds