Wall clock time and date at job start Fri Apr 10 2020 22:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46982 * 2 1 4 4 C 1.50701 * 109.46974 * 240.00357 * 2 1 3 5 5 H 1.08001 * 119.99609 * 240.00077 * 4 2 1 6 6 C 1.37872 * 120.00062 * 59.99566 * 4 2 1 7 7 N 1.31516 * 120.00385 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99912 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47103 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47049 * 120.00240 * 8 6 4 11 11 H 1.48500 * 109.47249 * 240.00335 * 8 6 4 12 12 N 1.46497 * 109.47091 * 119.99981 * 2 1 3 13 13 S 1.65600 * 120.00019 * 263.53593 * 12 2 1 14 14 O 1.42108 * 106.40055 * 179.16135 * 13 12 2 15 15 O 1.42102 * 106.40326 * 312.07895 * 13 12 2 16 16 C 1.76192 * 107.22095 * 65.62009 * 13 12 2 17 17 C 1.38533 * 120.02812 * 244.69257 * 16 13 12 18 18 C 1.38347 * 120.21591 * 179.75597 * 17 16 13 19 19 C 1.37985 * 120.32437 * 0.49806 * 18 17 16 20 20 C 1.39578 * 119.79454 * 359.76466 * 19 18 17 21 21 C 1.37502 * 120.02577 * 64.96666 * 16 13 12 22 22 C 1.50797 * 133.37404 * 0.02562 * 21 16 13 23 23 O 1.45396 * 106.41680 * 180.02562 * 22 21 16 24 24 C 1.34339 * 109.01446 * 0.02562 * 23 22 21 25 25 O 1.21476 * 124.89117 * 179.97438 * 24 23 22 26 26 H 1.09001 * 109.46773 * 294.34914 * 1 2 3 27 27 H 1.08990 * 109.47024 * 174.35254 * 1 2 3 28 28 H 1.09002 * 109.46859 * 54.34648 * 1 2 3 29 29 H 0.97001 * 120.00164 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99992 * 83.53426 * 12 2 1 31 31 H 1.08001 * 119.88882 * 359.97438 * 17 16 13 32 32 H 1.08004 * 119.83948 * 180.28265 * 18 17 16 33 33 H 1.08001 * 120.10344 * 179.73279 * 19 18 17 34 34 H 1.09000 * 110.06642 * 299.23756 * 22 21 16 35 35 H 1.08997 * 110.06828 * 60.76267 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6038 10 1 1.1678 -1.5864 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 7 2.0184 -0.6906 1.1961 13 16 2.4466 0.1801 2.5381 14 8 2.8528 -0.7661 3.5175 15 8 3.2830 1.2346 2.0822 16 6 0.9818 0.9390 3.1568 17 6 0.8630 2.3192 3.1568 18 6 -0.2875 2.9190 3.6371 19 6 -1.3213 2.1489 4.1292 20 6 -1.2068 0.7579 4.1376 21 6 -0.0420 0.1619 3.6453 22 6 -0.2321 -1.3266 3.7941 23 8 -1.5468 -1.5158 4.3857 24 6 -2.1142 -0.3145 4.5848 25 8 -3.2157 -0.1374 5.0653 26 1 -0.3633 0.4237 0.9363 27 1 -0.3633 -1.0226 -0.1011 28 1 -0.3633 0.5990 -0.8351 29 1 0.7094 1.1619 -3.4844 30 1 2.0909 -1.6579 1.2021 31 1 1.6698 2.9288 2.7774 32 1 -0.3755 3.9954 3.6300 33 1 -2.2160 2.6211 4.5072 34 1 -0.1891 -1.8086 2.8174 35 1 0.5358 -1.7381 4.4490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725831240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:08 Heat of formation + Delta-G solvation = -116.787346 kcal Electronic energy + Delta-G solvation = -24183.583932 eV Core-core repulsion = 20467.312131 eV Total energy + Delta-G solvation = -3716.271802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.75770 -38.58414 -37.50779 -36.93721 -35.65673 -35.57194 -32.41302 -32.17139 -31.65171 -28.51920 -27.50957 -25.38218 -24.72474 -22.55876 -21.66666 -21.09504 -19.15259 -17.97198 -17.59167 -17.43756 -16.96717 -16.51492 -16.23459 -15.74352 -15.49804 -15.00681 -14.64188 -14.17386 -13.89929 -13.72930 -13.61583 -13.21433 -12.83552 -12.50889 -12.37257 -12.21759 -11.92848 -11.79526 -11.73176 -11.35461 -11.13872 -11.08052 -11.03697 -10.73938 -10.48152 -10.35036 -10.21468 -9.68625 -9.38087 -9.25138 -8.78757 -8.46814 -6.23585 -4.30803 0.26672 0.53156 0.75216 2.18810 2.82759 3.18348 3.19635 3.28315 3.31025 3.39902 3.45463 3.79954 3.98161 4.27963 4.42389 4.65161 4.76376 4.93014 4.98844 5.09650 5.10354 5.24822 5.35955 5.62490 5.72765 5.91227 6.12212 6.31085 6.43271 6.60605 6.61327 6.82861 7.23284 7.39724 7.50350 7.68376 7.85455 8.10589 8.71874 9.36046 10.83075 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.004996 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.912407 B = 5603.025496 C = 5978.011167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.268 3.732 3 H 0.053 0.947 4 C -0.523 4.523 5 H 0.067 0.933 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -1.096 6.096 13 S 2.684 3.316 14 O -0.974 6.974 15 O -0.951 6.951 16 C -0.647 4.647 17 C 0.021 3.979 18 C -0.145 4.145 19 C 0.012 3.988 20 C -0.219 4.219 21 C 0.001 3.999 22 C 0.068 3.932 23 O -0.311 6.311 24 C 0.526 3.474 25 O -0.455 6.455 26 H 0.009 0.991 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.265 0.735 30 H 0.411 0.589 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 1.702 11.039 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.164 3.836 3 H 0.071 0.929 4 C -0.562 4.562 5 H 0.085 0.915 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.859 5.859 13 S 2.770 3.230 14 O -0.964 6.964 15 O -0.941 6.941 16 C -0.730 4.730 17 C 0.002 3.998 18 C -0.164 4.164 19 C -0.006 4.006 20 C -0.221 4.221 21 C -0.001 4.001 22 C -0.006 4.006 23 O -0.226 6.226 24 C 0.369 3.631 25 O -0.341 6.341 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.246 0.754 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.910 1.978 11.544 11.867 hybrid contribution -0.506 -0.456 -0.999 1.209 sum -2.416 1.522 10.545 10.925 Atomic orbital electron populations 1.22303 0.98504 1.01001 0.99871 1.18687 0.90700 0.93228 0.81007 0.92890 1.21217 1.32143 1.13284 0.89602 0.91503 1.24913 0.94763 0.94976 0.99167 1.69870 1.36154 1.22547 1.24007 0.86373 0.78627 0.79616 0.82393 1.19623 1.20933 1.20815 1.55560 1.83613 1.18901 1.27794 1.02222 0.73733 0.73917 0.73087 1.93554 1.80823 1.61609 1.60383 1.93587 1.62395 1.57392 1.80760 1.30521 1.21812 1.03928 1.16787 1.21356 0.97524 0.92185 0.88730 1.21337 0.93440 1.00990 1.00594 1.21105 0.98060 0.90797 0.90627 1.20869 0.97082 0.95658 1.08497 1.20254 0.92928 0.95716 0.91164 1.22912 0.83068 0.91999 1.02611 1.87257 1.30947 1.30141 1.74209 1.20390 0.85204 0.82050 0.75496 1.90877 1.18493 1.83812 1.40893 0.97209 0.94347 0.88902 0.92539 0.75438 0.82425 0.83574 0.84032 0.84897 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.21 37.16 0.34 -2.91 16 2 C 0.27 5.81 2.91 -69.08 -0.20 5.61 16 3 H 0.05 1.27 7.48 -51.93 -0.39 0.88 16 4 C -0.52 -12.80 8.77 -34.44 -0.30 -13.10 16 5 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.07 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.16 11.38 55.43 0.63 -22.53 16 8 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 9 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -1.10 -19.18 5.45 -5.88 -0.03 -19.21 16 13 S 2.68 44.15 5.51 -107.50 -0.59 43.55 16 14 O -0.97 -16.34 17.47 -57.17 -1.00 -17.34 16 15 O -0.95 -18.41 16.29 -57.17 -0.93 -19.35 16 16 C -0.65 -9.35 4.91 -39.74 -0.20 -9.54 16 17 C 0.02 0.27 9.56 -39.43 -0.38 -0.11 16 18 C -0.15 -1.54 10.02 -39.63 -0.40 -1.94 16 19 C 0.01 0.14 10.10 -39.17 -0.40 -0.25 16 20 C -0.22 -2.99 6.27 -105.08 -0.66 -3.64 16 21 C 0.00 0.02 5.60 -104.26 -0.58 -0.57 16 22 C 0.07 0.83 7.43 36.05 0.27 1.10 16 23 O -0.31 -4.34 11.13 -39.17 -0.44 -4.77 16 24 C 0.53 7.90 8.58 34.47 0.30 8.20 16 25 O -0.45 -7.81 18.04 -18.92 -0.34 -8.15 16 26 H 0.01 0.16 6.59 -51.93 -0.34 -0.18 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 2.17 6.24 -51.93 -0.32 1.85 16 29 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.41 6.28 8.84 -34.47 -0.30 5.97 16 31 H 0.16 1.86 7.34 -52.49 -0.39 1.47 16 32 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.14 1.43 7.98 -51.93 -0.41 1.02 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -31.04 317.78 -8.63 -39.67 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -3.39 Total: 4.18 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.30 Total: -15.61 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.60 Total: -41.74 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -2.71 Total: -49.60 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 44.15 SS G_CDS: -0.59 Total: 43.55 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.04 -8.63 -39.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725831240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.122 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds