Wall clock time and date at job start Fri Apr 10 2020 22:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46982 * 2 1 4 4 C 1.50701 * 109.46974 * 240.00357 * 2 1 3 5 5 H 1.08001 * 119.99609 * 240.00077 * 4 2 1 6 6 C 1.37872 * 120.00062 * 59.99566 * 4 2 1 7 7 N 1.31516 * 120.00385 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99912 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47103 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47049 * 120.00240 * 8 6 4 11 11 H 1.48500 * 109.47249 * 240.00335 * 8 6 4 12 12 N 1.46497 * 109.47091 * 119.99981 * 2 1 3 13 13 S 1.65600 * 120.00019 * 263.53593 * 12 2 1 14 14 O 1.42108 * 106.40055 * 179.16135 * 13 12 2 15 15 O 1.42102 * 106.40326 * 312.07895 * 13 12 2 16 16 C 1.76192 * 107.22095 * 65.62009 * 13 12 2 17 17 C 1.38533 * 120.02812 * 244.69257 * 16 13 12 18 18 C 1.38347 * 120.21591 * 179.75597 * 17 16 13 19 19 C 1.37985 * 120.32437 * 0.49806 * 18 17 16 20 20 C 1.39578 * 119.79454 * 359.76466 * 19 18 17 21 21 C 1.37502 * 120.02577 * 64.96666 * 16 13 12 22 22 C 1.50797 * 133.37404 * 0.02562 * 21 16 13 23 23 O 1.45396 * 106.41680 * 180.02562 * 22 21 16 24 24 C 1.34339 * 109.01446 * 0.02562 * 23 22 21 25 25 O 1.21476 * 124.89117 * 179.97438 * 24 23 22 26 26 H 1.09001 * 109.46773 * 294.34914 * 1 2 3 27 27 H 1.08990 * 109.47024 * 174.35254 * 1 2 3 28 28 H 1.09002 * 109.46859 * 54.34648 * 1 2 3 29 29 H 0.97001 * 120.00164 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99992 * 83.53426 * 12 2 1 31 31 H 1.08001 * 119.88882 * 359.97438 * 17 16 13 32 32 H 1.08004 * 119.83948 * 180.28265 * 18 17 16 33 33 H 1.08001 * 120.10344 * 179.73279 * 19 18 17 34 34 H 1.09000 * 110.06642 * 299.23756 * 22 21 16 35 35 H 1.08997 * 110.06828 * 60.76267 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6038 10 1 1.1678 -1.5864 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 7 2.0184 -0.6906 1.1961 13 16 2.4466 0.1801 2.5381 14 8 2.8528 -0.7661 3.5175 15 8 3.2830 1.2346 2.0822 16 6 0.9818 0.9390 3.1568 17 6 0.8630 2.3192 3.1568 18 6 -0.2875 2.9190 3.6371 19 6 -1.3213 2.1489 4.1292 20 6 -1.2068 0.7579 4.1376 21 6 -0.0420 0.1619 3.6453 22 6 -0.2321 -1.3266 3.7941 23 8 -1.5468 -1.5158 4.3857 24 6 -2.1142 -0.3145 4.5848 25 8 -3.2157 -0.1374 5.0653 26 1 -0.3633 0.4237 0.9363 27 1 -0.3633 -1.0226 -0.1011 28 1 -0.3633 0.5990 -0.8351 29 1 0.7094 1.1619 -3.4844 30 1 2.0909 -1.6579 1.2021 31 1 1.6698 2.9288 2.7774 32 1 -0.3755 3.9954 3.6300 33 1 -2.2160 2.6211 4.5072 34 1 -0.1891 -1.8086 2.8174 35 1 0.5358 -1.7381 4.4490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725831240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:08 Heat of formation + Delta-G solvation = -138.207752 kcal Electronic energy + Delta-G solvation = -24184.512791 eV Core-core repulsion = 20467.312131 eV Total energy + Delta-G solvation = -3717.200660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.81532 -39.63469 -38.66290 -38.31071 -37.29424 -36.97116 -34.13862 -33.22805 -32.67703 -30.16295 -28.50783 -27.22833 -25.76091 -23.56945 -22.90989 -22.65630 -20.46496 -19.27673 -18.90577 -18.63789 -18.05725 -17.77680 -17.58438 -17.12719 -16.74359 -16.45890 -15.90915 -15.42322 -15.11022 -14.98899 -14.61029 -14.53366 -14.25481 -14.02608 -13.57816 -13.49277 -13.26338 -13.18591 -13.11074 -13.03621 -12.82872 -12.42873 -12.24786 -12.18583 -12.13189 -11.98580 -11.50933 -11.11986 -10.72033 -10.59526 -10.23709 -10.12160 -8.13488 -6.25671 -0.77593 -0.63130 -0.38243 1.10962 1.45653 1.49674 1.58788 1.78383 2.01064 2.27390 2.37876 2.46333 2.70163 2.77871 3.18090 3.33514 3.64546 3.81985 4.01305 4.03488 4.19122 4.23241 4.41383 4.50983 4.65678 4.84443 4.90344 4.98298 4.99537 5.13884 5.30588 5.47117 5.60965 5.76989 6.03899 6.10248 6.12136 6.41490 6.84793 7.43974 8.92228 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.004996 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.912407 B = 5603.025496 C = 5978.011167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.274 3.726 3 H 0.028 0.972 4 C -0.538 4.538 5 H 0.068 0.932 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.957 3.043 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.285 1.285 12 N -1.096 6.096 13 S 2.701 3.299 14 O -0.978 6.978 15 O -0.985 6.985 16 C -0.658 4.658 17 C 0.010 3.990 18 C -0.133 4.133 19 C 0.020 3.980 20 C -0.233 4.233 21 C -0.004 4.004 22 C 0.062 3.938 23 O -0.316 6.316 24 C 0.526 3.474 25 O -0.485 6.485 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.264 0.736 30 H 0.421 0.579 31 H 0.165 0.835 32 H 0.187 0.813 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 1.950 11.597 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.169 3.831 3 H 0.045 0.955 4 C -0.577 4.577 5 H 0.086 0.914 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.783 3.217 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.211 1.211 12 N -0.858 5.858 13 S 2.791 3.209 14 O -0.968 6.968 15 O -0.975 6.975 16 C -0.745 4.745 17 C -0.009 4.009 18 C -0.151 4.151 19 C 0.002 3.998 20 C -0.236 4.236 21 C -0.006 4.006 22 C -0.012 4.012 23 O -0.231 6.231 24 C 0.370 3.630 25 O -0.373 6.373 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.257 0.743 31 H 0.182 0.818 32 H 0.204 0.796 33 H 0.186 0.814 34 H 0.165 0.835 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.127 2.178 12.090 12.468 hybrid contribution -0.419 -0.490 -1.086 1.263 sum -2.546 1.689 11.005 11.421 Atomic orbital electron populations 1.22102 0.97584 1.00823 0.99933 1.18335 0.91252 0.91920 0.81598 0.95462 1.21616 1.31868 1.13364 0.90880 0.91388 1.25609 0.95134 0.95666 1.01711 1.69981 1.37171 1.23656 1.24395 0.85518 0.78064 0.78672 0.79415 1.19024 1.20733 1.21107 1.55320 1.83687 1.19485 1.27345 1.01438 0.73848 0.73178 0.72457 1.93542 1.81401 1.61891 1.59936 1.93544 1.64348 1.58293 1.81310 1.30075 1.20969 1.04785 1.18704 1.21670 0.98770 0.91698 0.88743 1.21755 0.91813 1.02903 0.98615 1.21549 0.99097 0.89975 0.89190 1.20936 0.96652 0.96490 1.09497 1.20348 0.92773 0.96464 0.90994 1.23200 0.82662 0.91535 1.03772 1.87233 1.31681 1.30069 1.74071 1.20575 0.84954 0.82584 0.74846 1.90854 1.19721 1.84276 1.42465 0.94843 0.93973 0.91637 0.92642 0.74312 0.81795 0.79584 0.81358 0.83465 0.82427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 9.21 71.98 0.66 -5.23 16 2 C 0.27 11.87 2.91 44.25 0.13 12.00 16 3 H 0.03 1.33 7.48 -2.38 -0.02 1.32 16 4 C -0.54 -26.24 8.77 25.60 0.22 -26.02 16 5 H 0.07 3.21 7.81 -2.91 -0.02 3.19 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.91 -47.96 11.38 21.45 0.24 -47.72 16 8 Si 0.96 40.38 29.54 68.60 2.03 42.41 16 9 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 N -1.10 -37.64 5.45 -172.51 -0.94 -38.58 16 13 S 2.70 86.79 5.51 -56.49 -0.31 86.48 16 14 O -0.98 -31.67 17.47 -128.00 -2.24 -33.90 16 15 O -0.98 -38.07 16.29 -128.00 -2.08 -40.15 16 16 C -0.66 -18.01 4.91 22.17 0.11 -17.90 16 17 C 0.01 0.24 9.56 22.37 0.21 0.46 16 18 C -0.13 -2.36 10.02 22.24 0.22 -2.14 16 19 C 0.02 0.39 10.10 22.53 0.23 0.62 16 20 C -0.23 -5.90 6.27 -20.16 -0.13 -6.03 16 21 C 0.00 -0.10 5.60 -19.63 -0.11 -0.21 16 22 C 0.06 1.40 7.43 71.27 0.53 1.92 16 23 O -0.32 -8.45 11.13 -52.84 -0.59 -9.03 16 24 C 0.53 15.19 8.58 70.24 0.60 15.79 16 25 O -0.48 -16.29 18.04 19.61 0.35 -15.93 16 26 H 0.03 1.16 6.59 -2.39 -0.02 1.14 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 3.06 6.24 -2.39 -0.01 3.05 16 29 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 30 H 0.42 12.47 8.84 -96.75 -0.86 11.61 16 31 H 0.16 3.61 7.34 -2.91 -0.02 3.59 16 32 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.16 2.96 7.98 -2.39 -0.02 2.94 16 Total: -1.00 -66.16 317.78 -0.11 -66.26 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.30 Total: 15.48 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 3.13 Total: -25.31 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -0.70 Total: -86.30 kcal Atomic # 8 Polarization: -94.46 SS G_CDS: -4.55 Total: -99.02 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: 86.79 SS G_CDS: -0.31 Total: 86.48 kcal Total: -66.16 -0.11 -66.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725831240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.945 kcal (2) G-P(sol) polarization free energy of solvation -66.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds