Wall clock time and date at job start Fri Apr 10 2020 22:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99484 * 2 1 4 4 H 1.48504 * 109.47253 * 269.99366 * 3 2 1 5 5 H 1.48498 * 109.47503 * 30.00205 * 3 2 1 6 6 H 1.48509 * 109.46864 * 149.99624 * 3 2 1 7 7 C 1.37874 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99532 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00411 * 179.97438 * 10 9 7 12 12 O 1.21594 * 119.99793 * 0.02562 * 11 10 9 13 13 C 1.47606 * 120.00430 * 180.02562 * 11 10 9 14 14 C 1.39713 * 120.04299 * 359.97438 * 13 11 10 15 15 C 1.37966 * 120.05434 * 180.02562 * 14 13 11 16 16 Cl 1.73604 * 120.04926 * 180.02562 * 15 14 13 17 17 C 1.38868 * 119.89383 * 0.02562 * 15 14 13 18 18 C 1.38979 * 120.29402 * 359.97438 * 17 15 14 19 19 C 1.38078 * 120.21868 * 359.97438 * 18 17 15 20 20 O 1.36499 * 119.58737 * 179.97438 * 18 17 15 21 21 C 1.42718 * 115.88527 * 68.28720 * 20 18 17 22 22 C 1.52069 * 110.86461 * 275.52999 * 21 20 18 23 23 C 1.52064 * 112.28889 * 64.85386 * 22 21 20 24 24 O 1.36350 * 120.15255 * 179.97438 * 17 15 14 25 25 H 0.96998 * 120.00412 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47303 * 60.00059 * 9 7 2 27 27 H 1.08991 * 109.47512 * 299.99626 * 9 7 2 28 28 H 0.97003 * 119.99870 * 0.02562 * 10 9 7 29 29 H 1.07994 * 119.97132 * 0.02562 * 14 13 11 30 30 H 1.08007 * 120.18123 * 179.97438 * 19 18 17 31 31 H 1.08992 * 109.08389 * 155.22308 * 21 20 18 32 32 H 1.08999 * 109.24890 * 35.94454 * 21 20 18 33 33 H 1.09002 * 108.90627 * 304.15665 * 22 21 20 34 34 H 1.09000 * 108.89938 * 185.54545 * 22 21 20 35 35 H 1.09002 * 109.21338 * 55.54294 * 23 22 21 36 36 H 1.08998 * 109.21564 * 174.91678 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7540 -4.8832 0.0011 12 8 0.5586 -5.1055 0.0011 13 6 2.7132 -6.0051 0.0016 14 6 4.0870 -5.7509 0.0011 15 6 4.9838 -6.7993 0.0011 16 17 6.6908 -6.4832 0.0011 17 6 4.5188 -8.1078 0.0011 18 6 3.1533 -8.3665 0.0016 19 6 2.2484 -7.3236 0.0027 20 8 2.7121 -9.6583 0.0011 21 6 2.9608 -10.4021 1.1934 22 6 4.3592 -10.9994 1.1773 23 6 5.4424 -9.9323 1.1943 24 8 5.4003 -9.1480 0.0006 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 3.1568 -3.4353 0.0009 29 1 4.4473 -4.7328 0.0007 30 1 1.1873 -7.5254 0.0027 31 1 2.2284 -11.2055 1.2715 32 1 2.8622 -9.7425 2.0556 33 1 4.4742 -11.6051 0.2785 34 1 4.4799 -11.6391 2.0516 35 1 5.2919 -9.2821 2.0561 36 1 6.4177 -10.4124 1.2731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726263363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:12 Heat of formation + Delta-G solvation = -114.562934 kcal Electronic energy + Delta-G solvation = -22905.241683 eV Core-core repulsion = 19187.022633 eV Total energy + Delta-G solvation = -3718.219050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18944 -40.77149 -38.81165 -38.52421 -37.37891 -36.27257 -34.51511 -33.90504 -31.77287 -30.98834 -29.08436 -27.67895 -25.52402 -23.99092 -23.89659 -22.65152 -21.61299 -20.06165 -19.16978 -18.42527 -18.14509 -17.47883 -17.04406 -16.61563 -16.51760 -16.36251 -16.15316 -15.77695 -15.30323 -15.13133 -15.08072 -14.49965 -14.22948 -14.10929 -13.97712 -13.73405 -13.17537 -12.93325 -12.72392 -12.51422 -12.37800 -12.24598 -12.15335 -11.87112 -11.49263 -11.44122 -11.16722 -11.06322 -10.81099 -10.04943 -9.95554 -9.73709 -8.28552 -6.45010 -0.66414 -0.24773 0.84609 1.43459 1.45238 1.47240 1.58218 2.13564 2.26997 2.34568 2.45386 2.60746 3.06959 3.53007 3.64007 3.71411 3.80351 3.83458 3.90441 4.09571 4.21255 4.34755 4.36297 4.56897 4.74399 4.76964 4.83152 4.90697 4.97642 5.09562 5.12886 5.23081 5.41031 5.62837 5.82855 5.94208 6.28196 6.62895 6.75566 7.18873 7.33390 8.83557 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.021542 B = 0.003279 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.469157 B = 8538.230183 C = 9679.782399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.265 3.735 10 N -0.695 5.695 11 C 0.544 3.456 12 O -0.588 6.588 13 C -0.112 4.112 14 C -0.062 4.062 15 C -0.045 4.045 16 Cl -0.031 7.031 17 C 0.102 3.898 18 C 0.071 3.929 19 C -0.059 4.059 20 O -0.328 6.328 21 C 0.043 3.957 22 C -0.181 4.181 23 C 0.048 3.952 24 O -0.321 6.321 25 H 0.269 0.731 26 H -0.006 1.006 27 H -0.004 1.004 28 H 0.408 0.592 29 H 0.163 0.837 30 H 0.146 0.854 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.343 -21.510 4.544 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.344 5.344 11 C 0.332 3.668 12 O -0.470 6.470 13 C -0.116 4.116 14 C -0.082 4.082 15 C -0.072 4.072 16 Cl -0.002 7.002 17 C 0.055 3.945 18 C 0.027 3.973 19 C -0.079 4.079 20 O -0.245 6.245 21 C -0.030 4.030 22 C -0.218 4.218 23 C -0.026 4.026 24 O -0.238 6.238 25 H 0.078 0.922 26 H 0.012 0.988 27 H 0.014 0.986 28 H 0.245 0.755 29 H 0.181 0.819 30 H 0.163 0.837 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.547 -21.659 4.277 26.439 hybrid contribution 0.183 1.078 0.117 1.100 sum 14.731 -20.581 4.394 25.688 Atomic orbital electron populations 1.70126 1.08213 1.28609 1.49842 1.26021 0.95749 1.03775 0.93820 0.85182 0.78574 0.77064 0.78573 1.19702 1.21018 1.17820 1.21599 0.94395 0.90406 1.53075 0.89654 1.18665 0.88555 0.83751 0.94768 1.46138 1.11551 1.05175 1.71583 1.18486 0.87896 0.83611 0.76822 1.90739 1.18068 1.85400 1.52838 1.19605 0.92832 0.92951 1.06217 1.21299 0.90290 1.00073 0.96509 1.20699 0.87198 0.92170 1.07137 1.98385 1.09526 1.95544 1.96756 1.19064 0.88224 0.87303 0.99865 1.18709 0.89823 0.85673 1.03140 1.21243 1.01249 0.89750 0.95653 1.86376 1.79279 1.19256 1.39576 1.23052 0.98830 0.96092 0.85062 1.22469 0.93705 0.99630 1.06038 1.23073 1.02083 0.92599 0.84840 1.86355 1.57696 1.40316 1.39400 0.92206 0.98812 0.98636 0.75473 0.81939 0.83650 0.85347 0.91744 0.90125 0.85565 0.91643 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.98 41.73 29.54 68.60 2.03 43.75 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.56 -29.74 9.28 25.60 0.24 -29.51 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.26 14.32 5.43 85.63 0.46 14.78 16 10 N -0.70 -29.40 5.50 -469.94 -2.58 -31.98 16 11 C 0.54 22.51 7.76 86.72 0.67 23.18 16 12 O -0.59 -29.30 16.34 -4.01 -0.07 -29.37 16 13 C -0.11 -3.54 5.88 -20.07 -0.12 -3.66 16 14 C -0.06 -1.60 9.31 22.56 0.21 -1.39 16 15 C -0.04 -1.06 6.33 22.36 0.14 -0.92 16 16 Cl -0.03 -0.65 28.51 -2.72 -0.08 -0.73 16 17 C 0.10 2.44 5.73 22.60 0.13 2.57 16 18 C 0.07 1.83 5.72 22.41 0.13 1.96 16 19 C -0.06 -1.75 9.54 22.61 0.22 -1.53 16 20 O -0.33 -7.68 10.16 -84.54 -0.86 -8.54 16 21 C 0.04 0.61 6.50 71.67 0.47 1.08 16 22 C -0.18 -1.82 5.93 29.98 0.18 -1.64 16 23 C 0.05 0.61 6.51 71.67 0.47 1.07 16 24 O -0.32 -6.80 9.62 -82.80 -0.80 -7.59 16 25 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 26 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.41 14.16 6.34 -92.71 -0.59 13.57 16 29 H 0.16 3.63 6.38 -2.91 -0.02 3.61 16 30 H 0.15 4.50 7.65 -2.91 -0.02 4.47 16 31 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 0.87 7.93 -2.39 -0.02 0.85 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.78 7.93 -2.39 -0.02 0.77 16 36 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -71.51 324.63 2.13 -69.38 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.55 Total: 13.32 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 3.65 Total: 6.80 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.30 Total: -87.03 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.72 Total: -45.49 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -71.51 2.13 -69.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726263363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.179 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds