Wall clock time and date at job start Fri Apr 10 2020 22:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47306 * 299.99533 * 3 2 1 6 6 H 1.48505 * 109.47369 * 60.00149 * 3 2 1 7 7 C 1.38955 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99267 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00137 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00473 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.47613 * 179.97438 * 12 10 9 14 14 C 1.34228 * 117.00479 * 179.97438 * 13 12 10 15 15 O 1.20825 * 119.99501 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00238 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47140 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47142 * 180.02562 * 17 16 14 19 19 C 1.38270 * 119.99101 * 270.27596 * 18 17 16 20 20 C 1.38215 * 120.02537 * 180.27948 * 19 18 17 21 21 C 1.38238 * 120.01126 * 359.44038 * 20 19 18 22 22 C 1.38325 * 119.98878 * 0.28199 * 21 20 19 23 23 Cl 1.73606 * 120.01335 * 179.97438 * 22 21 20 24 24 C 1.38193 * 119.99765 * 89.99998 * 18 17 16 25 25 H 0.97004 * 119.99617 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00130 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.46915 * 59.99402 * 12 10 9 28 28 H 1.08999 * 109.47533 * 300.00040 * 12 10 9 29 29 H 1.09004 * 109.46471 * 60.00514 * 16 14 13 30 30 H 1.08998 * 109.47585 * 300.00696 * 16 14 13 31 31 H 1.08998 * 109.47471 * 60.00114 * 17 16 14 32 32 H 1.09000 * 109.47154 * 299.99976 * 17 16 14 33 33 H 1.07997 * 119.98420 * 0.02562 * 19 18 17 34 34 H 1.08002 * 119.99636 * 179.72646 * 20 19 18 35 35 H 1.07999 * 120.00577 * 180.25936 * 21 20 19 36 36 H 1.08003 * 120.00423 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0022 13 8 2.1872 -5.9666 0.0027 14 6 1.6741 -7.2069 0.0037 15 8 0.4763 -7.3652 0.0038 16 6 2.5921 -8.4021 0.0037 17 6 1.7588 -9.6852 0.0044 18 6 2.6768 -10.8804 0.0051 19 6 3.1023 -11.4256 -1.1922 20 6 3.9396 -12.5253 -1.1925 21 6 4.3614 -13.0736 0.0044 22 6 3.9406 -12.5250 1.2025 23 17 4.4693 -13.2134 2.7060 24 6 3.0977 -11.4277 1.2022 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6173 -4.9212 -0.8880 28 1 0.6167 -4.9201 0.8919 29 1 3.2215 -8.3767 0.8933 30 1 3.2204 -8.3778 -0.8866 31 1 1.1296 -9.7104 -0.8853 32 1 1.1303 -9.7098 0.8947 33 1 2.7771 -10.9946 -2.1275 34 1 4.2682 -12.9535 -2.1280 35 1 5.0190 -13.9303 0.0041 36 1 2.7684 -10.9992 2.1373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:25 Heat of formation + Delta-G solvation = -117.886624 kcal Electronic energy + Delta-G solvation = -21449.849070 eV Core-core repulsion = 17731.485894 eV Total energy + Delta-G solvation = -3718.363176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46432 -39.72927 -38.17041 -36.89242 -36.22224 -34.35582 -34.01128 -31.39870 -31.15519 -30.41252 -28.35853 -25.48020 -24.38995 -23.08064 -21.76451 -20.48830 -19.58922 -18.08853 -17.80844 -17.11499 -16.69912 -16.31865 -15.94465 -15.84274 -15.40471 -14.58504 -14.55471 -14.14864 -14.07889 -13.87106 -13.46896 -13.41184 -13.00537 -12.59509 -12.27767 -11.97555 -11.93733 -11.80416 -11.66018 -11.63141 -11.28238 -11.16495 -11.16065 -10.45829 -10.42408 -10.39835 -10.30186 -9.62720 -9.30582 -9.05740 -8.53192 -8.09402 -6.51126 -3.93066 0.75011 0.84582 1.76296 2.29063 2.69653 3.10996 3.22556 3.23918 3.31007 3.72640 4.09238 4.27810 4.39722 4.59818 4.67450 4.75476 4.77867 4.89406 5.00790 5.11002 5.13950 5.22844 5.30377 5.48974 5.55562 5.56417 5.68745 5.79611 5.82592 5.92833 6.04801 6.13697 6.39264 6.63338 7.47056 7.82571 7.95411 8.47490 9.06231 9.38372 9.88262 10.66157 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.001934 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.935832 B =14471.356660 C =14730.605455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.326 6.326 14 C 0.458 3.542 15 O -0.516 6.516 16 C -0.108 4.108 17 C -0.070 4.070 18 C -0.068 4.068 19 C -0.110 4.110 20 C -0.105 4.105 21 C -0.115 4.115 22 C -0.033 4.033 23 Cl -0.072 7.072 24 C -0.106 4.106 25 H 0.273 0.727 26 H 0.395 0.605 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 -25.519 -0.390 25.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.017 4.017 13 O -0.240 6.240 14 C 0.301 3.699 15 O -0.405 6.405 16 C -0.146 4.146 17 C -0.107 4.107 18 C -0.068 4.068 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.059 4.059 23 Cl -0.043 7.043 24 C -0.124 4.124 25 H 0.083 0.917 26 H 0.228 0.772 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.309 -25.417 -0.250 25.781 hybrid contribution -0.370 0.803 0.160 0.898 sum 3.940 -24.614 -0.091 24.927 Atomic orbital electron populations 1.69625 1.06001 1.28382 1.49750 1.25325 0.95704 0.99898 0.96921 0.85736 0.79711 0.80721 0.77804 1.19082 1.20620 1.20619 1.19776 0.93508 0.81746 1.48051 0.87557 1.41716 1.09378 1.04117 1.63833 1.19341 0.88347 0.84108 0.85954 1.90566 1.13423 1.86805 1.55227 1.22744 0.90850 0.84627 1.03483 1.86554 1.40399 1.14287 1.82796 1.23693 0.88665 0.85047 0.72497 1.90658 1.16952 1.86899 1.46011 1.21337 0.97868 0.88776 1.06594 1.20438 0.95910 0.89059 1.05323 1.19798 0.97699 0.96797 0.92520 1.21242 0.97399 0.96073 0.98051 1.21133 0.97408 0.96095 0.97685 1.21077 1.00721 1.00744 0.90852 1.20932 1.00446 0.97233 0.87297 1.98382 1.89419 1.84173 1.32348 1.21018 0.97335 0.95108 0.98981 0.91677 0.77159 0.89551 0.89541 0.87335 0.87307 0.89386 0.89516 0.85072 0.84949 0.85025 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 2 C 0.02 0.63 5.50 -17.46 -0.10 0.53 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -13.95 5.29 -10.97 -0.06 -14.01 16 10 C 0.44 10.52 7.86 -10.99 -0.09 10.44 16 11 O -0.58 -16.01 16.08 -14.12 -0.23 -16.24 16 12 C 0.06 1.14 5.94 36.00 0.21 1.35 16 13 O -0.33 -5.91 9.75 -45.90 -0.45 -6.35 16 14 C 0.46 6.68 7.96 36.00 0.29 6.97 16 15 O -0.52 -8.42 15.73 -18.75 -0.29 -8.72 16 16 C -0.11 -1.07 5.79 -27.89 -0.16 -1.24 16 17 C -0.07 -0.60 4.63 -27.88 -0.13 -0.73 16 18 C -0.07 -0.54 5.13 -104.63 -0.54 -1.08 16 19 C -0.11 -0.78 9.70 -39.58 -0.38 -1.16 16 20 C -0.10 -0.68 10.05 -39.59 -0.40 -1.08 16 21 C -0.12 -0.83 9.83 -39.55 -0.39 -1.22 16 22 C -0.03 -0.27 6.32 -39.50 -0.25 -0.52 16 23 Cl -0.07 -0.60 28.96 -51.86 -1.50 -2.10 16 24 C -0.11 -0.88 9.49 -39.55 -0.38 -1.26 16 25 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 27 H 0.09 1.48 8.13 -51.93 -0.42 1.05 16 28 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 29 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.75 8.05 -51.93 -0.42 0.34 16 32 H 0.09 0.77 8.04 -51.93 -0.42 0.35 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -32.52 341.85 -8.18 -40.70 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.05 Total: 6.67 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.45 Total: 2.55 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.67 Total: -37.28 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.97 Total: -31.31 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.52 -8.18 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.189 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds