Wall clock time and date at job start Fri Apr 10 2020 22:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47306 * 299.99533 * 3 2 1 6 6 H 1.48505 * 109.47369 * 60.00149 * 3 2 1 7 7 C 1.38955 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99267 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00137 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00473 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.47613 * 179.97438 * 12 10 9 14 14 C 1.34228 * 117.00479 * 179.97438 * 13 12 10 15 15 O 1.20825 * 119.99501 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00238 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47140 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47142 * 180.02562 * 17 16 14 19 19 C 1.38270 * 119.99101 * 270.27596 * 18 17 16 20 20 C 1.38215 * 120.02537 * 180.27948 * 19 18 17 21 21 C 1.38238 * 120.01126 * 359.44038 * 20 19 18 22 22 C 1.38325 * 119.98878 * 0.28199 * 21 20 19 23 23 Cl 1.73606 * 120.01335 * 179.97438 * 22 21 20 24 24 C 1.38193 * 119.99765 * 89.99998 * 18 17 16 25 25 H 0.97004 * 119.99617 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00130 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.46915 * 59.99402 * 12 10 9 28 28 H 1.08999 * 109.47533 * 300.00040 * 12 10 9 29 29 H 1.09004 * 109.46471 * 60.00514 * 16 14 13 30 30 H 1.08998 * 109.47585 * 300.00696 * 16 14 13 31 31 H 1.08998 * 109.47471 * 60.00114 * 17 16 14 32 32 H 1.09000 * 109.47154 * 299.99976 * 17 16 14 33 33 H 1.07997 * 119.98420 * 0.02562 * 19 18 17 34 34 H 1.08002 * 119.99636 * 179.72646 * 20 19 18 35 35 H 1.07999 * 120.00577 * 180.25936 * 21 20 19 36 36 H 1.08003 * 120.00423 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0022 13 8 2.1872 -5.9666 0.0027 14 6 1.6741 -7.2069 0.0037 15 8 0.4763 -7.3652 0.0038 16 6 2.5921 -8.4021 0.0037 17 6 1.7588 -9.6852 0.0044 18 6 2.6768 -10.8804 0.0051 19 6 3.1023 -11.4256 -1.1922 20 6 3.9396 -12.5253 -1.1925 21 6 4.3614 -13.0736 0.0044 22 6 3.9406 -12.5250 1.2025 23 17 4.4693 -13.2134 2.7060 24 6 3.0977 -11.4277 1.2022 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6173 -4.9212 -0.8880 28 1 0.6167 -4.9201 0.8919 29 1 3.2215 -8.3767 0.8933 30 1 3.2204 -8.3778 -0.8866 31 1 1.1296 -9.7104 -0.8853 32 1 1.1303 -9.7098 0.8947 33 1 2.7771 -10.9946 -2.1275 34 1 4.2682 -12.9535 -2.1280 35 1 5.0190 -13.9303 0.0041 36 1 2.7684 -10.9992 2.1373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731240717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:24 Heat of formation + Delta-G solvation = -135.865240 kcal Electronic energy + Delta-G solvation = -21450.628681 eV Core-core repulsion = 17731.485894 eV Total energy + Delta-G solvation = -3719.142788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.68645 -40.40187 -39.99610 -37.67414 -37.41477 -36.03958 -35.09267 -33.42437 -31.71166 -31.23242 -29.84424 -26.84557 -25.79402 -23.62370 -22.56720 -21.50710 -21.40454 -20.08081 -18.93214 -17.90956 -17.89435 -17.79161 -17.15980 -16.67876 -16.48822 -16.21241 -15.87380 -15.76238 -14.84196 -14.76652 -14.54837 -14.48498 -13.99550 -13.73034 -13.68304 -13.56665 -13.17391 -12.94623 -12.58230 -12.47283 -12.39405 -12.27582 -12.11156 -11.98354 -11.82595 -11.78236 -11.61280 -11.58918 -10.52004 -10.12511 -9.86831 -9.63234 -8.53240 -6.03787 0.18246 0.29045 1.13281 1.16685 1.34353 1.39602 1.47798 1.59948 1.86267 2.29680 2.65939 3.04870 3.12332 3.55767 3.82252 3.86718 3.96624 4.06058 4.15375 4.17222 4.22382 4.23632 4.36201 4.45082 4.55483 4.65913 4.91156 4.96328 5.12015 5.27423 5.35879 5.39516 5.40814 5.56440 5.86842 5.88698 6.45233 6.66478 7.02413 7.39265 7.92818 8.63967 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.001934 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.935832 B =14471.356660 C =14730.605455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.084 0.916 9 N -0.559 5.559 10 C 0.435 3.565 11 O -0.619 6.619 12 C 0.071 3.929 13 O -0.347 6.347 14 C 0.459 3.541 15 O -0.534 6.534 16 C -0.100 4.100 17 C -0.062 4.062 18 C -0.074 4.074 19 C -0.112 4.112 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.047 4.047 23 Cl -0.079 7.079 24 C -0.117 4.117 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -26.154 -1.103 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.102 0.898 9 N -0.196 5.196 10 C 0.222 3.778 11 O -0.506 6.506 12 C -0.006 4.006 13 O -0.262 6.262 14 C 0.304 3.696 15 O -0.423 6.423 16 C -0.138 4.138 17 C -0.099 4.099 18 C -0.074 4.074 19 C -0.130 4.130 20 C -0.122 4.122 21 C -0.138 4.138 22 C -0.074 4.074 23 Cl -0.050 7.050 24 C -0.136 4.136 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.163 0.837 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.313 -26.073 -0.961 26.445 hybrid contribution -0.398 0.915 0.366 1.062 sum 3.915 -25.158 -0.595 25.468 Atomic orbital electron populations 1.69680 1.06938 1.29669 1.49233 1.26144 0.96613 1.02629 0.95693 0.84788 0.78059 0.76544 0.78441 1.19567 1.19417 1.19473 1.19752 0.92925 0.83391 1.50559 0.89798 1.41759 1.09571 1.04234 1.64032 1.20168 0.88097 0.85477 0.84044 1.90528 1.15508 1.87743 1.56780 1.22489 0.90192 0.82611 1.05299 1.86565 1.40868 1.15312 1.83493 1.24553 0.89165 0.84613 0.71297 1.90649 1.17989 1.86818 1.46884 1.21492 0.97388 0.86928 1.07956 1.20348 0.95765 0.88608 1.05166 1.19734 0.98038 0.96792 0.92870 1.21509 0.97069 0.96117 0.98333 1.21448 0.96690 0.95647 0.98423 1.21343 1.00653 1.01065 0.90720 1.21084 1.01093 0.97678 0.87518 1.98376 1.89503 1.84255 1.32879 1.21115 0.97677 0.95431 0.99333 0.90963 0.76553 0.87552 0.87680 0.86165 0.85518 0.89221 0.90085 0.83424 0.82461 0.83665 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.43 13.05 21.67 0.28 -48.14 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 1.00 41.91 29.55 68.60 2.03 43.94 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.34 -18.90 9.68 84.04 0.81 -18.09 16 8 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.58 5.29 -306.99 -1.62 -30.21 16 10 C 0.44 21.19 7.86 87.66 0.69 21.88 16 11 O -0.62 -35.17 16.08 15.71 0.25 -34.92 16 12 C 0.07 2.64 5.94 71.23 0.42 3.06 16 13 O -0.35 -12.32 9.75 -45.04 -0.44 -12.76 16 14 C 0.46 12.82 7.96 71.24 0.57 13.39 16 15 O -0.53 -16.75 15.73 21.97 0.35 -16.40 16 16 C -0.10 -1.82 5.79 29.85 0.17 -1.65 16 17 C -0.06 -0.96 4.63 29.85 0.14 -0.83 16 18 C -0.07 -1.07 5.13 -19.87 -0.10 -1.17 16 19 C -0.11 -1.33 9.70 22.27 0.22 -1.11 16 20 C -0.10 -1.09 10.05 22.26 0.22 -0.87 16 21 C -0.12 -1.51 9.83 22.29 0.22 -1.29 16 22 C -0.05 -0.74 6.32 22.32 0.14 -0.60 16 23 Cl -0.08 -1.28 28.96 -2.72 -0.08 -1.35 16 24 C -0.12 -1.83 9.49 22.29 0.21 -1.62 16 25 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 26 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 27 H 0.11 3.51 8.13 -2.38 -0.02 3.49 16 28 H 0.11 3.49 8.13 -2.39 -0.02 3.48 16 29 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.13 1.89 8.14 -2.39 -0.02 1.88 16 31 H 0.09 1.38 8.05 -2.39 -0.02 1.36 16 32 H 0.08 1.36 8.04 -2.39 -0.02 1.34 16 33 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 35 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -69.81 341.85 5.34 -64.48 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.39 Total: 24.33 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 4.18 Total: 11.04 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.34 Total: -78.35 kcal Atomic # 8 Polarization: -64.24 SS G_CDS: 0.16 Total: -64.08 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.35 kcal Total: -69.81 5.34 -64.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.386 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds