Wall clock time and date at job start Fri Apr 10 2020 22:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47008 * 2 1 4 4 C 1.50700 * 109.46775 * 239.99625 * 2 1 3 5 5 O 1.21289 * 120.00513 * 277.86396 * 4 2 1 6 6 N 1.34783 * 119.99375 * 97.86556 * 4 2 1 7 7 C 1.37096 * 120.00392 * 4.39166 * 6 4 2 8 8 H 1.08002 * 119.99572 * 342.41612 * 7 6 4 9 9 C 1.38945 * 120.00030 * 162.41249 * 7 6 4 10 10 N 1.31411 * 120.00321 * 344.99661 * 9 7 6 11 11 Si 1.86802 * 120.00093 * 164.99641 * 9 7 6 12 12 H 1.48500 * 109.47051 * 90.00266 * 11 9 7 13 13 H 1.48498 * 109.47355 * 210.00180 * 11 9 7 14 14 H 1.48497 * 109.47015 * 330.00188 * 11 9 7 15 15 C 1.46506 * 119.99480 * 184.39083 * 6 4 2 16 16 C 1.50698 * 109.47089 * 275.29236 * 15 6 4 17 17 O 1.20817 * 120.00315 * 359.97438 * 16 15 6 18 18 O 1.34233 * 119.99731 * 180.02562 * 16 15 6 19 19 C 1.50700 * 109.46920 * 119.99914 * 2 1 3 20 20 C 1.38267 * 119.99210 * 60.02343 * 19 2 1 21 21 C 1.38220 * 120.02461 * 179.97438 * 20 19 2 22 22 C 1.38234 * 120.01343 * 359.95107 * 21 20 19 23 23 C 1.38328 * 119.98751 * 359.77378 * 22 21 20 24 24 Cl 1.73598 * 120.01441 * 180.27589 * 23 22 21 25 25 C 1.38186 * 119.99425 * 239.99360 * 19 2 1 26 26 H 1.08993 * 109.47324 * 175.28671 * 1 2 3 27 27 H 1.09000 * 109.46621 * 295.28772 * 1 2 3 28 28 H 1.08996 * 109.46794 * 55.28263 * 1 2 3 29 29 H 0.96998 * 120.00390 * 180.02562 * 10 9 7 30 30 H 1.08993 * 109.47261 * 35.29355 * 15 6 4 31 31 H 1.09004 * 109.46657 * 155.29064 * 15 6 4 32 32 H 0.96701 * 116.99648 * 180.02562 * 18 16 15 33 33 H 1.08001 * 119.99036 * 359.97330 * 20 19 2 34 34 H 1.08004 * 119.99301 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.00698 * 180.02562 * 22 21 20 36 36 H 1.08007 * 120.00656 * 0.03465 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.0990 -1.9214 -1.2469 6 7 2.4075 -0.0002 -2.3127 7 6 2.4179 1.3699 -2.2637 8 1 1.8713 1.8866 -1.4886 9 6 3.1317 2.0936 -3.2110 10 7 4.0237 1.4899 -3.9638 11 14 2.8232 3.9247 -3.4145 12 1 3.7303 4.6824 -2.5153 13 1 3.0819 4.3167 -4.8232 14 1 1.4124 4.2306 -3.0666 15 6 2.8042 -0.6922 -3.5416 16 6 4.2603 -1.0712 -3.4569 17 8 4.9011 -0.7915 -2.4716 18 8 4.8456 -1.7186 -4.4768 19 6 2.0324 -0.7104 1.2305 20 6 1.6986 -2.0343 1.4489 21 6 2.1594 -2.6867 2.5770 22 6 2.9550 -2.0161 3.4870 23 6 3.2939 -0.6933 3.2662 24 17 4.2990 0.1474 4.4049 25 6 2.8269 -0.0388 2.1400 26 1 -0.3633 -1.0241 -0.0844 27 1 -0.3632 0.4390 0.9292 28 1 -0.3633 0.5853 -0.8447 29 1 4.5223 1.9952 -4.6249 30 1 2.2011 -1.5919 -3.6627 31 1 2.6493 -0.0332 -4.3958 32 1 5.7814 -1.9410 -4.3763 33 1 1.0776 -2.5589 0.7378 34 1 1.8980 -3.7207 2.7473 35 1 3.3153 -2.5261 4.3683 36 1 3.0875 0.9954 1.9693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736201674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:28 Heat of formation + Delta-G solvation = -118.091925 kcal Electronic energy + Delta-G solvation = -23982.819462 eV Core-core repulsion = 20264.447383 eV Total energy + Delta-G solvation = -3718.372079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45763 -40.61082 -39.55632 -37.48778 -36.98144 -36.42370 -34.90180 -33.45055 -31.71379 -30.60194 -29.52775 -26.79804 -25.38752 -23.59262 -23.31588 -21.98880 -20.92758 -18.98384 -18.68197 -18.23727 -17.63890 -17.34928 -16.56602 -16.46466 -16.17376 -16.00205 -15.80665 -15.29307 -14.89597 -14.78752 -14.31996 -14.20012 -13.84943 -13.46030 -13.29754 -13.16764 -12.93684 -12.74765 -12.64511 -12.48748 -12.38499 -12.17536 -12.16401 -12.07973 -11.91620 -11.62318 -11.48929 -10.97148 -10.40479 -9.88317 -9.78627 -9.56054 -8.36540 -5.95040 0.25040 0.32512 1.14020 1.42760 1.49932 1.61365 1.76950 1.88720 2.28310 2.53032 2.67842 2.96643 3.20275 3.69884 3.90941 4.11277 4.23521 4.31226 4.36980 4.43889 4.48954 4.56025 4.77264 4.82695 4.88978 4.94904 4.99202 5.06081 5.22861 5.27662 5.43379 5.48279 5.68421 5.72749 5.90859 5.92496 6.32861 7.08135 7.38632 7.50072 7.88071 8.70327 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004971 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.744943 B = 5631.264066 C = 6190.004340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.060 4.060 3 H 0.098 0.902 4 C 0.471 3.529 5 O -0.618 6.618 6 N -0.441 5.441 7 C -0.347 4.347 8 H 0.120 0.880 9 C -0.007 4.007 10 N -0.905 5.905 11 Si 0.994 3.006 12 H -0.284 1.284 13 H -0.282 1.282 14 H -0.251 1.251 15 C 0.155 3.845 16 C 0.503 3.497 17 O -0.554 6.554 18 O -0.524 6.524 19 C -0.066 4.066 20 C -0.091 4.091 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.047 4.047 24 Cl -0.073 7.073 25 C -0.118 4.118 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.271 0.729 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.410 0.590 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 -2.378 8.062 9.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.081 4.081 3 H 0.116 0.884 4 C 0.261 3.739 5 O -0.504 6.504 6 N -0.159 5.159 7 C -0.474 4.474 8 H 0.137 0.863 9 C -0.208 4.208 10 N -0.544 5.544 11 Si 0.817 3.183 12 H -0.210 1.210 13 H -0.208 1.208 14 H -0.175 1.175 15 C 0.029 3.971 16 C 0.346 3.654 17 O -0.443 6.443 18 O -0.336 6.336 19 C -0.067 4.067 20 C -0.110 4.110 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.073 4.073 24 Cl -0.044 7.044 25 C -0.136 4.136 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.269 0.731 33 H 0.145 0.855 34 H 0.176 0.824 35 H 0.173 0.827 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.035 -2.647 8.192 9.973 hybrid contribution 1.371 0.914 -0.426 1.702 sum -3.664 -1.732 7.766 8.760 Atomic orbital electron populations 1.21626 0.90204 1.02697 1.03471 1.20118 0.98925 0.99856 0.89177 0.88404 1.20628 0.81529 0.87137 0.84576 1.90485 1.61528 1.15327 1.83103 1.43615 1.56455 1.06677 1.09193 1.20097 1.31124 0.80027 1.16116 0.86285 1.26097 0.93637 1.04615 0.96417 1.69841 1.22180 1.38744 1.23674 0.84912 0.79393 0.76651 0.77315 1.20978 1.20774 1.17453 1.20545 0.87303 0.97836 0.91377 1.23858 0.91817 0.70971 0.78764 1.90537 1.66142 1.52669 1.34990 1.84459 1.31958 1.71075 1.46060 1.19586 0.97553 0.95014 0.94528 1.21331 0.99267 0.93634 0.96720 1.21417 0.97235 1.01125 0.93195 1.21298 0.98676 0.92131 1.01152 1.20930 0.98953 0.94266 0.93190 1.98340 1.67971 1.78231 1.59833 1.21039 0.98131 1.00918 0.93558 0.92305 0.89778 0.91379 0.91877 0.89468 0.85681 0.73105 0.85476 0.82387 0.82660 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 8.92 71.98 0.64 -3.02 16 2 C -0.06 -2.26 2.39 -12.28 -0.03 -2.29 16 3 H 0.10 3.77 5.61 -2.39 -0.01 3.75 16 4 C 0.47 21.94 6.40 87.66 0.56 22.50 16 5 O -0.62 -30.99 14.36 -3.06 -0.04 -31.03 16 6 N -0.44 -21.51 2.17 -639.59 -1.39 -22.89 16 7 C -0.35 -16.62 9.03 84.04 0.76 -15.86 16 8 H 0.12 5.21 5.93 -2.91 -0.02 5.19 16 9 C -0.01 -0.33 5.04 84.93 0.43 0.10 16 10 N -0.90 -46.06 8.93 21.66 0.19 -45.87 16 11 Si 0.99 37.99 29.58 68.60 2.03 40.02 16 12 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 13 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 14 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 15 C 0.16 7.36 5.11 85.63 0.44 7.80 16 16 C 0.50 24.78 6.45 71.24 0.46 25.24 16 17 O -0.55 -31.54 16.85 21.99 0.37 -31.16 16 18 O -0.52 -20.95 13.42 -51.44 -0.69 -21.64 16 19 C -0.07 -2.37 4.73 -19.87 -0.09 -2.47 16 20 C -0.09 -3.04 8.10 22.27 0.18 -2.86 16 21 C -0.11 -3.02 10.05 22.26 0.22 -2.80 16 22 C -0.11 -2.99 9.83 22.29 0.22 -2.78 16 23 C -0.05 -1.41 6.32 22.32 0.14 -1.27 16 24 Cl -0.07 -1.94 28.96 -2.72 -0.08 -2.02 16 25 C -0.12 -3.99 9.46 22.29 0.21 -3.78 16 26 H 0.06 1.75 7.56 -2.39 -0.02 1.73 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 30 H 0.09 3.86 7.65 -2.39 -0.02 3.84 16 31 H 0.13 5.94 6.27 -2.38 -0.01 5.92 16 32 H 0.41 12.69 9.10 -74.06 -0.67 12.02 16 33 H 0.13 4.41 6.68 -2.91 -0.02 4.39 16 34 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.13 4.28 7.95 -2.91 -0.02 4.26 16 Total: -1.00 -65.75 324.87 5.00 -60.75 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.47 Total: 35.33 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 4.14 Total: 18.52 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.19 Total: -68.76 kcal Atomic # 8 Polarization: -83.47 SS G_CDS: -0.36 Total: -83.84 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.02 kcal Total: -65.75 5.00 -60.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736201674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.342 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds