Wall clock time and date at job start Fri Apr 10 2020 22:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 120.00451 * 2 1 4 4 H 1.48497 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47149 * 299.99697 * 3 2 1 6 6 H 1.48501 * 109.47369 * 59.99908 * 3 2 1 7 7 C 1.38954 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00399 * 201.65479 * 7 2 1 9 9 N 1.37099 * 119.99534 * 21.65896 * 7 2 1 10 10 C 1.46500 * 120.00278 * 16.50362 * 9 7 2 11 11 C 1.50693 * 109.47447 * 264.06770 * 10 9 7 12 12 O 1.20830 * 120.00004 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.34775 * 119.99852 * 196.50345 * 9 7 2 15 15 O 1.21299 * 119.99863 * 0.02562 * 14 9 7 16 16 C 1.50703 * 120.00221 * 180.02562 * 14 9 7 17 17 C 1.52992 * 109.47400 * 180.02562 * 16 14 9 18 18 C 1.50703 * 109.47400 * 179.97438 * 17 16 14 19 19 C 1.38235 * 120.00470 * 99.99933 * 18 17 16 20 20 C 1.38221 * 120.00875 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.02832 * 0.03939 * 20 19 18 22 22 C 1.38186 * 120.01207 * 359.97438 * 21 20 19 23 23 C 1.38329 * 120.00417 * 279.72667 * 18 17 16 24 24 Cl 1.73599 * 120.01638 * 359.97383 * 23 18 17 25 25 H 0.97009 * 119.99415 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47055 * 24.07297 * 10 9 7 27 27 H 1.09008 * 109.46912 * 144.06506 * 10 9 7 28 28 H 0.96705 * 116.99594 * 180.02562 * 13 11 10 29 29 H 1.08999 * 109.47036 * 59.99931 * 16 14 9 30 30 H 1.09003 * 109.46675 * 300.00081 * 16 14 9 31 31 H 1.09009 * 109.47126 * 59.99753 * 17 16 14 32 32 H 1.08999 * 109.47155 * 300.00113 * 17 16 14 33 33 H 1.07994 * 119.99800 * 0.02562 * 19 18 17 34 34 H 1.07995 * 119.98637 * 180.02562 * 20 19 18 35 35 H 1.08002 * 119.98988 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.00866 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0316 -1.2363 0.3457 9 7 1.3958 -2.3489 -0.4372 10 6 0.1672 -2.2650 -1.2308 11 6 -1.0272 -2.4244 -0.3260 12 8 -0.8686 -2.5906 0.8603 13 8 -2.2674 -2.3807 -0.8376 14 6 1.9234 -3.5523 -0.1374 15 8 2.9404 -3.6218 0.5201 16 6 1.2500 -4.8115 -0.6190 17 6 2.0460 -6.0290 -0.1448 18 6 1.3722 -7.2882 -0.6259 19 6 1.8522 -7.9455 -1.7432 20 6 1.2345 -9.1008 -2.1842 21 6 0.1360 -9.5992 -1.5086 22 6 -0.3449 -8.9428 -0.3917 23 6 0.2767 -7.7897 0.0539 24 17 -0.3218 -6.9691 1.4618 25 1 -0.4850 0.8402 -0.0004 26 1 0.1206 -1.2954 -1.7268 27 1 0.1638 -3.0568 -1.9800 28 1 -3.0019 -2.4875 -0.2178 29 1 1.2070 -4.8068 -1.7081 30 1 0.2385 -4.8596 -0.2156 31 1 2.0886 -6.0335 0.9445 32 1 3.0576 -5.9811 -0.5477 33 1 2.7103 -7.5568 -2.2712 34 1 1.6101 -9.6142 -3.0570 35 1 -0.3464 -10.5017 -1.8540 36 1 -1.2027 -9.3324 0.1362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:32 Heat of formation + Delta-G solvation = -103.586630 kcal Electronic energy + Delta-G solvation = -23643.303934 eV Core-core repulsion = 19925.560852 eV Total energy + Delta-G solvation = -3717.743082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.67112 -39.26547 -38.09968 -36.29990 -35.29907 -34.55996 -33.65853 -31.76106 -30.78116 -29.47409 -27.65134 -25.48957 -23.65388 -22.73123 -21.22868 -20.94075 -18.75443 -17.17629 -17.11947 -16.84990 -16.21599 -15.90668 -15.54310 -15.24900 -14.62281 -14.44031 -14.13595 -14.09136 -13.83214 -13.54550 -13.09772 -12.55217 -12.46326 -11.90508 -11.69440 -11.65398 -11.61124 -11.41983 -11.37189 -11.30372 -10.95199 -10.57199 -10.52166 -10.41153 -10.31281 -10.26167 -9.62079 -9.03597 -8.96490 -8.68971 -8.43465 -7.90158 -6.44265 -3.87870 1.11385 1.21092 2.26920 3.13067 3.25003 3.32307 3.47216 3.56424 3.66916 4.08636 4.26205 4.61972 4.74710 4.81480 4.93512 5.07027 5.21100 5.30394 5.48369 5.57090 5.62062 5.73158 5.85023 5.91805 6.10233 6.17902 6.19011 6.33022 6.45717 6.53669 6.59015 6.60995 6.76357 7.50595 7.55996 7.99836 8.37790 9.04640 9.10169 9.32252 9.85887 10.64807 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.020479 B = 0.004245 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.941792 B = 6594.129296 C = 7119.922180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.028 3.972 3 Si 0.927 3.073 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.304 4.304 8 H 0.108 0.892 9 N -0.434 5.434 10 C 0.146 3.854 11 C 0.488 3.512 12 O -0.501 6.501 13 O -0.535 6.535 14 C 0.464 3.536 15 O -0.576 6.576 16 C -0.129 4.129 17 C -0.066 4.066 18 C -0.064 4.064 19 C -0.106 4.106 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.037 4.037 24 Cl -0.059 7.059 25 H 0.270 0.730 26 H 0.128 0.872 27 H 0.076 0.924 28 H 0.391 0.609 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 -14.607 -6.915 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.174 4.174 3 Si 0.754 3.246 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.431 4.431 8 H 0.126 0.874 9 N -0.153 5.153 10 C 0.019 3.981 11 C 0.328 3.672 12 O -0.386 6.386 13 O -0.346 6.346 14 C 0.253 3.747 15 O -0.459 6.459 16 C -0.169 4.169 17 C -0.103 4.103 18 C -0.065 4.065 19 C -0.125 4.125 20 C -0.134 4.134 21 C -0.138 4.138 22 C -0.130 4.130 23 C -0.064 4.064 24 Cl -0.030 7.030 25 H 0.080 0.920 26 H 0.145 0.855 27 H 0.094 0.906 28 H 0.248 0.752 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.005 -14.397 -6.381 16.032 hybrid contribution -0.633 0.977 0.640 1.328 sum -3.638 -13.421 -5.741 15.044 Atomic orbital electron populations 1.69821 1.06042 1.27705 1.48640 1.25224 0.95292 0.99951 0.96952 0.85846 0.79957 0.81074 0.77721 1.19161 1.20579 1.20929 1.19755 0.97893 0.83413 1.42045 0.87427 1.43457 1.20221 1.05496 1.46158 1.20665 0.81517 1.04653 0.91243 1.23836 0.83286 0.70981 0.89105 1.90621 1.85782 1.44719 1.17436 1.84522 1.17360 1.86376 1.46358 1.19994 0.87211 0.84127 0.83371 1.90523 1.26597 1.86496 1.42278 1.21561 1.00644 0.93469 1.01225 1.20371 0.98622 0.88700 1.02650 1.20024 0.94350 0.97292 0.94836 1.21104 1.00334 0.95333 0.95682 1.21220 0.96028 0.96293 0.99893 1.21050 0.97107 1.00123 0.95494 1.21041 1.00237 0.94315 0.97380 1.20966 0.97404 0.95789 0.92194 1.98410 1.87127 1.78258 1.39156 0.92004 0.85454 0.90567 0.75226 0.90439 0.90018 0.89560 0.89949 0.84997 0.85611 0.85469 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.25 9.28 55.50 0.52 -22.74 16 2 C 0.03 0.73 4.87 -17.47 -0.09 0.65 16 3 Si 0.93 20.53 29.60 -169.99 -5.03 15.50 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.30 -8.37 9.34 -14.93 -0.14 -8.50 16 8 H 0.11 3.11 7.37 -52.49 -0.39 2.73 16 9 N -0.43 -10.93 2.18 -116.09 -0.25 -11.19 16 10 C 0.15 3.18 4.97 -5.20 -0.03 3.15 16 11 C 0.49 10.91 5.86 36.00 0.21 11.12 16 12 O -0.50 -13.14 16.79 -18.75 -0.31 -13.45 16 13 O -0.54 -9.74 13.42 -39.25 -0.53 -10.27 16 14 C 0.46 11.26 7.42 -10.99 -0.08 11.18 16 15 O -0.58 -15.79 15.62 5.54 0.09 -15.70 16 16 C -0.13 -2.41 4.25 -27.89 -0.12 -2.53 16 17 C -0.07 -1.11 4.09 -27.89 -0.11 -1.22 16 18 C -0.06 -0.90 5.14 -104.59 -0.54 -1.44 16 19 C -0.11 -1.23 9.67 -39.59 -0.38 -1.61 16 20 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 21 C -0.12 -1.15 10.05 -39.59 -0.40 -1.54 16 22 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 23 C -0.04 -0.51 6.31 -39.50 -0.25 -0.76 16 24 Cl -0.06 -0.91 26.65 -51.86 -1.38 -2.29 16 25 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.13 2.87 6.37 -51.93 -0.33 2.54 16 27 H 0.08 1.35 6.69 -51.92 -0.35 1.00 16 28 H 0.39 5.55 9.10 45.56 0.41 5.96 16 29 H 0.08 1.25 7.42 -51.93 -0.39 0.86 16 30 H 0.08 1.59 6.67 -51.93 -0.35 1.24 16 31 H 0.09 1.62 7.30 -51.92 -0.38 1.24 16 32 H 0.08 1.35 7.96 -51.93 -0.41 0.93 16 33 H 0.13 1.31 8.04 -52.49 -0.42 0.89 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -33.71 326.11 -7.70 -41.41 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.00 Total: 8.50 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.71 Total: 5.32 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.26 Total: -33.92 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.76 Total: -39.42 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.38 Total: -2.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.71 -7.70 -41.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.178 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds