Wall clock time and date at job start Fri Apr 10 2020 22:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86793 * 120.00347 * 2 1 4 4 H 1.48495 * 109.47204 * 274.98422 * 3 2 1 5 5 H 1.48510 * 109.46960 * 34.98096 * 3 2 1 6 6 H 1.48496 * 109.47219 * 154.97795 * 3 2 1 7 7 C 1.38993 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99748 * 185.93493 * 7 2 1 9 9 N 1.37326 * 119.99809 * 5.93865 * 7 2 1 10 10 C 1.36501 * 126.06468 * 174.12238 * 9 7 2 11 11 C 1.35691 * 107.50404 * 179.97438 * 10 9 7 12 12 N 1.40537 * 126.08525 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00313 * 180.02562 * 12 11 10 14 14 O 1.21633 * 120.00033 * 359.97438 * 13 12 11 15 15 C 1.47413 * 120.00229 * 179.97438 * 13 12 11 16 16 C 1.39980 * 120.16130 * 89.71818 * 15 13 12 17 17 F 1.35096 * 120.08612 * 0.02562 * 16 15 13 18 18 C 1.38107 * 119.82718 * 179.74301 * 16 15 13 19 19 C 1.38593 * 120.16446 * 0.56025 * 18 16 15 20 20 F 1.35104 * 119.83242 * 179.71703 * 19 18 16 21 21 C 1.38605 * 120.33307 * 359.69187 * 19 18 16 22 22 C 1.38091 * 120.16289 * 0.02562 * 21 19 18 23 23 F 1.35100 * 120.08339 * 180.02562 * 22 21 19 24 24 C 1.40668 * 107.83198 * 359.97438 * 11 10 9 25 25 N 1.30901 * 108.38752 * 0.02562 * 24 11 10 26 26 H 0.96995 * 119.99367 * 359.97438 * 1 2 3 27 27 H 1.07993 * 126.24835 * 359.74087 * 10 9 7 28 28 H 0.96998 * 120.00187 * 359.97438 * 12 11 10 29 29 H 1.08001 * 119.91264 * 180.27447 * 18 16 15 30 30 H 1.07998 * 119.91541 * 180.02562 * 21 19 18 31 31 H 1.07997 * 125.80522 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 2.3893 2.1071 -1.3947 5 1 1.5011 2.6200 0.8027 6 1 3.5932 1.4119 0.5922 7 6 2.0080 -1.2037 0.0005 8 1 3.0836 -1.2062 0.0973 9 7 1.3268 -2.3898 -0.1220 10 6 1.8863 -3.6284 -0.2490 11 6 0.8732 -4.5263 -0.3416 12 7 1.0107 -5.9176 -0.4849 13 6 -0.0849 -6.6983 -0.5659 14 8 -1.1927 -6.1989 -0.5144 15 6 0.0594 -8.1576 -0.7168 16 6 0.1340 -8.9778 0.4150 17 9 0.0734 -8.4343 1.6504 18 6 0.2638 -10.3446 0.2656 19 6 0.3319 -10.9033 -1.0009 20 9 0.4646 -12.2407 -1.1393 21 6 0.2640 -10.0970 -2.1263 22 6 0.1284 -8.7293 -1.9927 23 9 0.0619 -7.9450 -3.0907 24 6 -0.3393 -3.8169 -0.2684 25 7 -0.0654 -2.5435 -0.1378 26 1 -0.4849 0.8401 0.0004 27 1 2.9424 -3.8524 -0.2753 28 1 1.8942 -6.3159 -0.5264 29 1 0.3170 -10.9791 1.1379 30 1 0.3173 -10.5396 -3.1099 31 1 -1.3279 -4.2492 -0.3126 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741678967.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:35 Heat of formation + Delta-G solvation = -72.693500 kcal Electronic energy + Delta-G solvation = -24309.251084 eV Core-core repulsion = 19949.883394 eV Total energy + Delta-G solvation = -4359.367690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.35918 -50.33920 -50.22375 -41.83937 -40.64423 -39.18876 -36.05596 -35.06143 -32.54638 -32.03433 -31.86406 -29.59077 -26.97526 -25.25456 -24.42284 -23.02761 -22.31650 -21.35174 -19.88703 -19.54740 -19.13687 -18.75829 -17.62038 -17.44748 -17.23908 -17.11473 -16.93956 -16.62204 -16.51688 -16.42295 -15.94217 -15.83273 -15.47442 -15.35421 -15.02713 -14.87858 -13.89397 -13.53810 -13.51158 -13.37787 -13.12656 -12.98651 -12.89703 -12.82003 -12.06933 -11.96653 -11.15470 -11.07875 -10.85830 -10.18210 -10.15589 -10.14723 -8.63653 -8.49778 -6.27845 -0.66319 -0.40515 1.00108 1.37729 1.39840 1.58514 1.76797 1.79611 1.94656 2.17078 2.24561 2.39522 2.80238 2.88939 2.94815 3.06021 3.43494 3.51590 3.64721 4.37333 4.37445 4.39725 4.41025 4.45545 4.55241 4.74467 4.97079 4.98978 5.22633 5.31111 5.37806 5.91933 6.22453 6.49628 6.68310 7.11249 7.41924 7.61726 8.49981 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.034934 B = 0.002916 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.323842 B = 9599.809375 C = 9792.070900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.006 4.006 3 Si 1.021 2.979 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.354 4.354 8 H 0.144 0.856 9 N -0.165 5.165 10 C -0.073 4.073 11 C -0.053 4.053 12 N -0.598 5.598 13 C 0.547 3.453 14 O -0.560 6.560 15 C -0.215 4.215 16 C 0.187 3.813 17 F -0.124 7.124 18 C -0.180 4.180 19 C 0.191 3.809 20 F -0.110 7.110 21 C -0.180 4.180 22 C 0.186 3.814 23 F -0.124 7.124 24 C -0.056 4.056 25 N -0.309 5.309 26 H 0.277 0.723 27 H 0.192 0.808 28 H 0.421 0.579 29 H 0.192 0.808 30 H 0.192 0.808 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -21.745 -2.275 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.218 4.218 3 Si 0.840 3.160 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.164 1.164 7 C -0.485 4.485 8 H 0.161 0.839 9 N 0.067 4.933 10 C -0.224 4.224 11 C -0.159 4.159 12 N -0.241 5.241 13 C 0.333 3.667 14 O -0.439 6.439 15 C -0.221 4.221 16 C 0.166 3.834 17 F -0.102 7.102 18 C -0.199 4.199 19 C 0.171 3.829 20 F -0.088 7.088 21 C -0.199 4.199 22 C 0.166 3.834 23 F -0.102 7.102 24 C -0.232 4.232 25 N -0.141 5.141 26 H 0.087 0.913 27 H 0.209 0.791 28 H 0.258 0.742 29 H 0.209 0.791 30 H 0.209 0.791 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.317 -20.084 -2.105 20.882 hybrid contribution 0.477 -0.008 -0.055 0.480 sum 5.794 -20.092 -2.161 21.022 Atomic orbital electron populations 1.70406 1.08529 1.29241 1.36904 1.26929 0.96462 1.04443 0.93997 0.84548 0.78547 0.73979 0.78942 1.19159 1.20152 1.16414 1.20682 0.93521 0.80896 1.53384 0.83913 1.44885 1.03574 1.05261 1.39595 1.21990 0.98783 0.84442 1.17184 1.17315 0.93195 0.83423 1.21956 1.42355 1.09323 1.03532 1.68934 1.18103 0.84308 0.86335 0.77979 1.90726 1.27048 1.75015 1.51104 1.19788 1.14990 0.93173 0.94128 1.16902 0.97667 0.90715 0.78105 1.91607 1.92934 1.86449 1.39177 1.21184 1.06546 0.92449 0.99729 1.16803 0.96284 0.77793 0.92068 1.91627 1.92226 1.28480 1.96452 1.21181 1.06532 0.89960 1.02235 1.16901 0.97665 0.88525 0.80312 1.91608 1.92911 1.74529 1.51139 1.24134 0.98869 0.91199 1.08951 1.78160 0.92241 1.16298 1.27382 0.91294 0.79136 0.74205 0.79095 0.79101 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.79 11.84 21.66 0.26 -47.53 16 2 C -0.01 -0.33 5.50 84.95 0.47 0.13 16 3 Si 1.02 38.50 29.56 68.60 2.03 40.53 16 4 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.24 -8.14 7.11 99.48 0.71 -7.43 16 7 C -0.35 -18.73 10.24 84.01 0.86 -17.87 16 8 H 0.14 6.50 7.84 -2.91 -0.02 6.48 16 9 N -0.16 -9.22 3.74 -190.00 -0.71 -9.93 16 10 C -0.07 -3.43 11.49 83.38 0.96 -2.47 16 11 C -0.05 -2.50 6.90 37.75 0.26 -2.24 16 12 N -0.60 -21.87 5.46 -306.87 -1.68 -23.55 16 13 C 0.55 20.44 6.50 86.66 0.56 21.00 16 14 O -0.56 -26.33 14.25 -4.14 -0.06 -26.39 16 15 C -0.22 -5.65 5.64 -20.02 -0.11 -5.76 16 16 C 0.19 3.98 7.29 22.66 0.17 4.14 16 17 F -0.12 -3.20 16.83 44.97 0.76 -2.45 16 18 C -0.18 -2.36 9.99 22.32 0.22 -2.13 16 19 C 0.19 2.25 7.30 22.44 0.16 2.42 16 20 F -0.11 -1.19 17.26 44.97 0.78 -0.42 16 21 C -0.18 -2.36 9.99 22.32 0.22 -2.14 16 22 C 0.19 3.98 7.29 22.66 0.17 4.15 16 23 F -0.12 -3.22 16.83 44.97 0.76 -2.46 16 24 C -0.06 -3.17 10.85 85.43 0.93 -2.24 16 25 N -0.31 -18.96 10.42 -56.46 -0.59 -19.54 16 26 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.19 6.91 8.06 -2.91 -0.02 6.89 16 28 H 0.42 11.46 8.81 -92.71 -0.82 10.64 16 29 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.17 9.39 5.91 -2.91 -0.02 9.38 16 Total: -1.00 -77.57 301.50 6.83 -70.74 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.42 Total: 24.02 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 4.86 Total: -3.02 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -2.72 Total: -100.56 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.06 Total: -26.39 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 2.29 Total: -5.33 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -77.57 6.83 -70.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741678967.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.951 kcal (2) G-P(sol) polarization free energy of solvation -77.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds