Wall clock time and date at job start Fri Apr 10 2020 22:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46876 * 2 1 4 4 C 1.50703 * 109.46893 * 119.99867 * 2 1 3 5 5 O 1.21282 * 120.00496 * 0.02562 * 4 2 1 6 6 N 1.34779 * 119.99744 * 180.02562 * 4 2 1 7 7 C 1.40002 * 120.00068 * 185.26912 * 6 4 2 8 8 C 1.39037 * 119.97368 * 33.37882 * 7 6 4 9 9 C 1.38173 * 120.26205 * 180.02562 * 8 7 6 10 10 C 1.38156 * 120.21705 * 359.97438 * 9 8 7 11 11 Cl 1.73604 * 120.02576 * 179.97438 * 10 9 8 12 12 C 1.39793 * 119.95018 * 359.97438 * 10 9 8 13 13 C 1.47608 * 120.12897 * 179.97438 * 12 10 9 14 14 O 1.21517 * 120.00098 * 359.72085 * 13 12 10 15 15 O 1.34737 * 119.99790 * 179.97438 * 13 12 10 16 16 C 1.34854 * 117.00181 * 179.97438 * 15 13 12 17 17 H 1.07998 * 119.99519 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00311 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00129 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99787 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46967 * 90.00137 * 20 18 16 22 22 H 1.48493 * 109.47183 * 209.99931 * 20 18 16 23 23 H 1.48500 * 109.47350 * 330.00497 * 20 18 16 24 24 C 1.38516 * 119.97768 * 213.62835 * 7 6 4 25 25 H 1.09001 * 109.47314 * 299.99981 * 1 2 3 26 26 H 1.08998 * 109.47063 * 60.00060 * 1 2 3 27 27 H 1.09008 * 109.46601 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47314 * 240.00018 * 2 1 3 29 29 H 1.09001 * 109.47134 * 59.99908 * 3 2 1 30 30 H 1.09003 * 109.47271 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47226 * 299.99840 * 3 2 1 32 32 H 0.97000 * 119.99692 * 5.27264 * 6 4 2 33 33 H 1.07993 * 119.86789 * 0.02562 * 8 7 6 34 34 H 1.08001 * 119.89361 * 179.97438 * 9 8 7 35 35 H 0.97004 * 120.00181 * 179.97438 * 19 18 16 36 36 H 1.08002 * 120.10657 * 0.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2442 -1.1717 2.0287 6 7 3.3574 -0.8331 1.4441 7 6 3.8251 -1.5869 2.5271 8 6 3.1207 -2.7094 2.9479 9 6 3.5766 -3.4574 4.0165 10 6 4.7363 -3.0953 4.6743 11 17 5.3042 -4.0383 6.0167 12 6 5.4522 -1.9691 4.2580 13 6 6.6915 -1.5783 4.9583 14 8 7.0885 -2.2332 5.9018 15 8 7.3796 -0.4926 4.5546 16 6 8.5026 -0.1906 5.2375 17 1 8.8131 -0.8091 6.0666 18 6 9.2593 0.9152 4.8749 19 7 10.3538 1.2091 5.5401 20 14 8.7225 1.9846 3.4403 21 1 7.8331 3.0661 3.9349 22 1 9.9181 2.5834 2.7947 23 1 7.9893 1.1544 2.4512 24 6 4.9864 -1.2110 3.1820 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 3.9870 -0.3990 0.8473 33 1 2.2137 -2.9977 2.4376 34 1 3.0245 -4.3279 4.3386 35 1 10.8829 1.9816 5.2864 36 1 5.5319 -0.3367 2.8587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745185787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:37 Heat of formation + Delta-G solvation = -112.741976 kcal Electronic energy + Delta-G solvation = -22923.038072 eV Core-core repulsion = 19204.897985 eV Total energy + Delta-G solvation = -3718.140088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91455 -41.17591 -39.65446 -37.65189 -37.21172 -35.81472 -35.40402 -34.53521 -32.65963 -30.62708 -27.94704 -27.91907 -25.48986 -24.94224 -23.41536 -21.93208 -20.90902 -20.18705 -19.23632 -18.60474 -17.76997 -17.70901 -16.83558 -16.70484 -16.55125 -16.30289 -15.69404 -15.46406 -15.06979 -14.77019 -14.53787 -14.46497 -14.15520 -13.82155 -13.56414 -13.24742 -13.11264 -13.03914 -12.83625 -12.67063 -12.42381 -12.34903 -12.22543 -12.03994 -11.97632 -11.82773 -11.29932 -10.95494 -10.84366 -10.68763 -10.26218 -9.26178 -8.55950 -6.40568 -0.49327 -0.06208 1.10132 1.31983 1.32771 1.42888 1.53542 1.72500 1.89210 2.22724 2.30051 2.53602 2.95093 3.49596 3.60066 3.79334 3.96259 4.02532 4.06861 4.11104 4.28636 4.50703 4.64510 4.71962 4.79588 4.90803 4.94639 4.97863 5.03997 5.10128 5.13041 5.34808 5.38017 5.46412 5.64573 5.86422 6.31049 6.48826 6.78779 7.02100 7.53016 8.56731 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.004945 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.791000 B = 5660.467430 C = 8068.847027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.150 4.150 4 C 0.514 3.486 5 O -0.555 6.555 6 N -0.662 5.662 7 C 0.147 3.853 8 C -0.081 4.081 9 C -0.089 4.089 10 C -0.017 4.017 11 Cl -0.050 7.050 12 C -0.092 4.092 13 C 0.442 3.558 14 O -0.541 6.541 15 O -0.246 6.246 16 C -0.403 4.403 17 H 0.058 0.942 18 C 0.015 3.985 19 N -0.914 5.914 20 Si 0.981 3.019 21 H -0.260 1.260 22 H -0.265 1.265 23 H -0.238 1.238 24 C -0.087 4.087 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.132 0.868 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.429 0.571 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.290 0.710 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.051 -1.555 -18.220 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.207 4.207 4 C 0.304 3.696 5 O -0.432 6.432 6 N -0.309 5.309 7 C 0.051 3.949 8 C -0.101 4.101 9 C -0.108 4.108 10 C -0.046 4.046 11 Cl -0.021 7.021 12 C -0.095 4.095 13 C 0.290 3.710 14 O -0.436 6.436 15 O -0.155 6.155 16 C -0.479 4.479 17 H 0.076 0.924 18 C -0.185 4.185 19 N -0.554 5.554 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.190 1.190 23 H -0.161 1.161 24 C -0.108 4.108 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.269 0.731 33 H 0.178 0.822 34 H 0.189 0.811 35 H 0.100 0.900 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.297 -1.968 -17.316 26.753 hybrid contribution 1.065 0.341 0.505 1.227 sum -19.232 -1.628 -16.811 25.596 Atomic orbital electron populations 1.21656 0.92348 1.02518 1.02668 1.21404 0.98328 0.97893 0.94842 1.21884 1.02124 0.93042 1.03650 1.21721 0.80846 0.78656 0.88334 1.90710 1.55818 1.49190 1.47444 1.43630 1.08633 1.50890 1.27702 1.17621 0.94008 0.92219 0.91008 1.21421 1.00233 0.91909 0.96526 1.21122 0.93184 1.01452 0.95046 1.21173 0.96470 0.93719 0.93189 1.98396 1.89008 1.70553 1.44122 1.18756 0.94002 0.97777 0.98954 1.21265 0.85403 0.80418 0.83942 1.90752 1.69666 1.53633 1.29525 1.83497 1.35243 1.41955 1.54818 1.20354 0.99452 1.13525 1.14586 0.92403 1.25628 0.93997 0.97389 1.01503 1.69693 1.15289 1.28661 1.41731 0.85123 0.78928 0.78136 0.77864 1.18478 1.18968 1.16137 1.21195 0.96938 0.99475 0.93214 0.93572 0.89451 0.92698 0.85062 0.93265 0.90906 0.89047 0.73099 0.82240 0.81105 0.89964 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.48 71.98 0.61 -0.87 16 2 C -0.10 -1.01 3.27 -11.54 -0.04 -1.05 16 3 C -0.15 -1.16 9.09 71.98 0.65 -0.51 16 4 C 0.51 9.12 6.89 87.66 0.60 9.72 16 5 O -0.55 -14.06 13.67 -3.04 -0.04 -14.10 16 6 N -0.66 -11.34 5.27 -303.58 -1.60 -12.94 16 7 C 0.15 3.57 6.27 38.09 0.24 3.81 16 8 C -0.08 -1.92 8.65 22.45 0.19 -1.72 16 9 C -0.09 -2.27 9.81 22.23 0.22 -2.05 16 10 C -0.02 -0.59 6.35 22.63 0.14 -0.45 16 11 Cl -0.05 -1.85 26.01 -2.72 -0.07 -1.92 16 12 C -0.09 -3.54 5.87 -20.09 -0.12 -3.66 16 13 C 0.44 22.19 7.83 70.30 0.55 22.74 16 14 O -0.54 -30.38 13.21 19.78 0.26 -30.12 16 15 O -0.25 -13.14 7.82 11.29 0.09 -13.05 16 16 C -0.40 -24.84 10.11 67.96 0.69 -24.15 16 17 H 0.06 4.08 7.09 -2.91 -0.02 4.06 16 18 C 0.02 0.86 5.50 84.89 0.47 1.33 16 19 N -0.91 -54.95 13.96 21.63 0.30 -54.65 16 20 Si 0.98 41.60 28.62 68.60 1.96 43.57 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.24 -9.17 7.11 99.48 0.71 -8.47 16 24 C -0.09 -2.66 9.53 22.67 0.22 -2.45 16 25 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 26 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.70 8.10 -2.38 -0.02 0.68 16 28 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.43 7.45 -2.39 -0.02 0.42 16 31 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.43 4.66 8.09 -92.71 -0.75 3.91 16 33 H 0.16 3.41 6.41 -2.91 -0.02 3.39 16 34 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.29 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.15 4.42 7.61 -2.91 -0.02 4.40 16 Total: -1.00 -78.61 329.28 5.71 -72.90 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.38 Total: 9.62 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.43 Total: 0.69 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -1.30 Total: -67.59 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: 0.31 Total: -57.27 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.96 Total: 43.57 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -78.61 5.71 -72.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745185787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.843 kcal (2) G-P(sol) polarization free energy of solvation -78.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds