Wall clock time and date at job start Fri Apr 10 2020 22:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35905 * 116.99958 * 2 1 4 4 C 1.38514 * 119.95396 * 359.72797 * 3 2 1 5 5 C 1.39552 * 119.90149 * 179.74975 * 4 3 2 6 6 C 1.43194 * 120.10228 * 180.29939 * 5 4 3 7 7 N 5.84143 * 81.17044 * 0.02562 * 2 1 3 8 8 C 1.39594 * 119.79732 * 0.49638 * 5 4 3 9 9 C 1.38473 * 119.90241 * 359.77908 * 8 5 4 10 10 O 1.35906 * 119.94963 * 180.02562 * 9 8 5 11 11 S 1.52209 * 113.99677 * 269.97440 * 10 9 8 12 12 O 1.42095 * 104.27358 * 191.07105 * 11 10 9 13 13 O 1.42099 * 104.27626 * 318.92597 * 11 10 9 14 14 C 1.81396 * 104.45012 * 74.99999 * 11 10 9 15 15 C 1.53003 * 109.47228 * 179.97438 * 14 11 10 16 16 C 1.50697 * 109.47002 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00354 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99813 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00088 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99894 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47034 * 90.00163 * 20 18 16 22 22 H 1.48503 * 109.47151 * 210.00072 * 20 18 16 23 23 H 1.48493 * 109.46970 * 329.99877 * 20 18 16 24 24 C 1.38718 * 119.94561 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.47607 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46864 * 300.00304 * 1 2 3 27 27 H 1.08999 * 109.46969 * 59.99685 * 1 2 3 28 28 H 1.08000 * 120.04869 * 0.02562 * 4 3 2 29 29 H 1.08005 * 120.04385 * 179.79294 * 8 5 4 30 30 H 1.08998 * 109.47350 * 300.00154 * 14 11 10 31 31 H 1.09006 * 109.47402 * 59.99744 * 14 11 10 32 32 H 1.08998 * 109.47222 * 300.00405 * 15 14 11 33 33 H 1.09001 * 109.46419 * 60.00065 * 15 14 11 34 34 H 0.97003 * 120.00230 * 179.97438 * 19 18 16 35 35 H 1.07995 * 119.90447 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3720 -0.0057 5 6 1.9254 3.6148 -0.0004 6 6 1.1487 4.8178 0.0002 7 7 0.5324 5.7722 0.0026 8 6 3.3197 3.6817 0.0001 9 6 4.0668 2.5158 0.0000 10 8 5.4243 2.5798 0.0011 11 16 6.0437 2.6091 -1.3890 12 8 7.4316 2.4098 -1.1584 13 8 5.2818 1.6674 -2.1320 14 6 5.7332 4.2931 -1.9875 15 6 6.3163 4.4504 -3.3933 16 6 6.0578 5.8492 -3.8907 17 1 5.5301 6.5554 -3.2668 18 6 6.4941 6.2273 -5.1427 19 7 6.2681 7.4479 -5.5771 20 14 7.4051 5.0053 -6.2228 21 1 6.4298 4.2614 -7.0598 22 1 8.3566 5.7333 -7.1002 23 1 8.1531 4.0498 -5.3669 24 6 3.4314 1.2822 0.0005 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2122 2.3155 -0.0097 29 1 3.8150 4.6415 0.0008 30 1 4.6591 4.4761 -2.0167 31 1 6.2058 5.0102 -1.3162 32 1 7.3904 4.2675 -3.3637 33 1 5.8440 3.7333 -4.0647 34 1 6.5754 7.7140 -6.4578 35 1 4.0172 0.3750 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752834376.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:50 Heat of formation + Delta-G solvation = -81.409119 kcal Electronic energy + Delta-G solvation = -23185.385674 eV Core-core repulsion = 19470.647987 eV Total energy + Delta-G solvation = -3714.737687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48070 -39.95102 -37.91020 -36.99499 -36.24232 -35.87980 -34.06296 -31.79509 -31.57508 -30.40262 -27.87318 -26.19532 -24.64784 -23.56450 -21.53047 -21.03434 -19.30129 -18.06125 -17.68716 -17.32763 -17.06559 -16.92602 -16.63231 -16.19132 -15.82932 -15.06244 -14.61900 -14.34560 -14.26878 -13.79642 -13.64454 -13.50967 -13.14863 -12.92954 -12.84284 -12.54500 -12.43665 -12.29423 -11.98031 -11.95025 -11.88001 -11.67012 -11.43867 -11.32163 -11.28696 -10.50852 -10.20613 -9.75225 -9.49564 -9.33270 -8.84692 -8.69597 -6.19574 -4.21702 -0.01738 0.34042 0.82291 2.04926 2.34300 2.48913 2.80755 3.24220 3.31992 3.33100 3.35182 3.36989 3.81984 4.10413 4.32709 4.32982 4.43164 4.49277 4.52454 4.70736 4.74886 4.92234 5.09051 5.11517 5.15706 5.34252 5.44155 5.54951 5.59029 5.65630 6.10469 6.16362 6.72450 6.77286 6.86074 7.14054 7.49536 8.32212 8.80993 9.39390 10.92661 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.004446 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.876962 B = 6295.786475 C = 7186.638074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.304 6.304 3 C 0.148 3.852 4 C -0.152 4.152 5 C 0.037 3.963 6 C 0.252 3.748 7 N -0.392 5.392 8 C -0.120 4.120 9 C 0.119 3.881 10 O -0.666 6.666 11 S 2.568 3.432 12 O -0.929 6.929 13 O -0.954 6.954 14 C -0.606 4.606 15 C -0.004 4.004 16 C -0.522 4.522 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.261 1.261 24 C -0.098 4.098 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.149 0.851 29 H 0.159 0.841 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.035 0.965 33 H 0.031 0.969 34 H 0.267 0.733 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 -14.415 13.616 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.217 6.217 3 C 0.102 3.898 4 C -0.174 4.174 5 C 0.033 3.967 6 C -0.065 4.065 7 N -0.067 5.067 8 C -0.143 4.143 9 C 0.077 3.923 10 O -0.624 6.624 11 S 2.668 3.332 12 O -0.927 6.927 13 O -0.952 6.952 14 C -0.737 4.737 15 C -0.043 4.043 16 C -0.561 4.561 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.531 5.531 20 Si 0.695 3.305 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.185 1.185 24 C -0.119 4.119 25 H 0.124 0.876 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.167 0.833 29 H 0.176 0.824 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.818 -13.712 13.699 22.701 hybrid contribution 0.540 -0.029 -0.841 1.000 sum -11.279 -13.741 12.858 21.939 Atomic orbital electron populations 1.23222 0.77472 1.04783 1.01882 1.86150 1.22008 1.25335 1.88225 1.18279 0.91065 0.84545 0.95882 1.21370 1.01139 0.90324 1.04542 1.15195 0.90311 0.87374 1.03824 1.25291 0.93841 0.92835 0.94489 1.81309 1.08356 1.09630 1.07407 1.21341 0.92522 0.98968 1.01431 1.17196 0.77442 0.93141 1.04486 1.85800 1.25146 1.92338 1.59133 1.06292 0.74903 0.79148 0.72862 1.93611 1.31024 1.85886 1.82181 1.93618 1.70907 1.59624 1.71063 1.30592 1.11487 1.20357 1.11237 1.19399 0.96550 1.00858 0.87478 1.20819 1.38561 0.94790 1.01887 0.90361 1.24978 0.95253 0.95210 0.97575 1.69878 1.46160 1.17778 1.19334 0.86935 0.80576 0.81856 0.81152 1.19634 1.20718 1.18537 1.20623 0.92416 0.98210 1.00670 0.87580 0.92137 0.91930 0.83310 0.82387 0.85322 0.84705 0.94665 0.95103 0.92318 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.30 -2.54 10.49 -19.44 -0.20 -2.74 16 3 C 0.15 1.38 6.68 -39.30 -0.26 1.12 16 4 C -0.15 -1.23 8.74 -38.99 -0.34 -1.57 16 5 C 0.04 0.36 5.73 -106.98 -0.61 -0.26 16 6 C 0.25 2.84 15.33 -22.47 -0.34 2.50 16 7 N -0.39 -5.36 18.54 41.84 0.78 -4.58 16 8 C -0.12 -1.29 8.16 -38.99 -0.32 -1.61 16 9 C 0.12 1.46 4.79 -39.30 -0.19 1.27 16 10 O -0.67 -9.12 10.05 -51.77 -0.52 -9.64 16 11 S 2.57 42.44 5.17 -107.50 -0.56 41.89 16 12 O -0.93 -18.09 18.09 -67.04 -1.21 -19.30 16 13 O -0.95 -16.88 16.26 -67.04 -1.09 -17.97 16 14 C -0.61 -10.53 5.39 37.16 0.20 -10.33 16 15 C 0.00 -0.09 4.05 -27.88 -0.11 -0.20 16 16 C -0.52 -14.20 9.66 -34.44 -0.33 -14.53 16 17 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 20 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 24 C -0.10 -1.09 8.97 -39.21 -0.35 -1.44 16 25 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.17 7.67 -51.93 -0.40 -0.22 16 27 H 0.06 0.23 7.64 -51.93 -0.40 -0.17 16 28 H 0.15 0.78 6.28 -52.49 -0.33 0.45 16 29 H 0.16 1.48 7.49 -52.48 -0.39 1.08 16 30 H 0.13 1.97 6.60 -51.92 -0.34 1.63 16 31 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 32 H 0.04 0.80 7.20 -51.93 -0.37 0.42 16 33 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 35 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -34.85 324.63 -7.06 -41.92 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -3.48 Total: -2.86 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -1.77 Total: -22.00 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 1.55 Total: -30.52 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -3.03 Total: -49.66 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 42.44 SS G_CDS: -0.56 Total: 41.89 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.85 -7.06 -41.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752834376.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.494 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds