Wall clock time and date at job start Fri Apr 10 2020 22:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37966 * 120.06792 * 2 1 4 4 C 1.38318 * 120.16823 * 180.25524 * 3 2 1 5 5 C 1.38499 * 120.28864 * 359.48836 * 4 3 2 6 6 Cl 1.73601 * 119.93928 * 180.23356 * 5 4 3 7 7 C 1.38040 * 120.12147 * 0.25613 * 5 4 3 8 8 C 1.39609 * 120.05816 * 179.74532 * 2 1 3 9 9 C 1.47727 * 120.14456 * 359.97438 * 8 2 1 10 10 O 1.21471 * 120.00425 * 353.78955 * 9 8 2 11 11 O 1.34715 * 119.99844 * 173.79181 * 9 8 2 12 12 C 1.45207 * 116.99948 * 179.97438 * 11 9 8 13 13 C 1.50692 * 109.47265 * 180.02562 * 12 11 9 14 14 O 1.21287 * 119.99994 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00229 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00237 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47185 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00119 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99835 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00001 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00047 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47051 * 89.99668 * 21 19 17 23 23 H 1.48497 * 109.47162 * 210.00036 * 21 19 17 24 24 H 1.48504 * 109.47050 * 330.00051 * 21 19 17 25 25 H 1.09007 * 109.47089 * 263.67583 * 1 2 3 26 26 H 1.08999 * 109.47148 * 23.66865 * 1 2 3 27 27 H 1.08992 * 109.47537 * 143.67359 * 1 2 3 28 28 H 1.08007 * 119.91871 * 0.02562 * 3 2 1 29 29 H 1.08005 * 119.85695 * 179.76713 * 4 3 2 30 30 H 1.08005 * 120.08160 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.46789 * 300.00027 * 12 11 9 32 32 H 1.08998 * 109.47075 * 59.99619 * 12 11 9 33 33 H 0.97001 * 120.00019 * 359.97438 * 15 13 12 34 34 H 1.09007 * 109.46587 * 300.00016 * 16 15 13 35 35 H 1.09002 * 109.47239 * 59.99423 * 16 15 13 36 36 H 0.97008 * 119.99994 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1940 0.0000 4 6 3.5814 1.1964 -0.0053 5 6 4.2821 0.0018 0.0000 6 17 6.0180 0.0154 -0.0006 7 6 3.6026 -1.1998 0.0053 8 6 2.2063 -1.2083 0.0054 9 6 1.4722 -2.4903 0.0116 10 8 0.2629 -2.4972 0.1259 11 8 2.1439 -3.6517 -0.1094 12 6 1.3579 -4.8725 -0.0946 13 6 2.2729 -6.0610 -0.2394 14 8 3.4699 -5.8955 -0.3443 15 7 1.7615 -7.3079 -0.2514 16 6 2.6511 -8.4633 -0.3917 17 6 1.8353 -9.7303 -0.3764 18 1 0.7616 -9.6799 -0.2722 19 6 2.4597 -10.9537 -0.4955 20 7 3.7673 -11.0150 -0.6229 21 14 1.4486 -12.5243 -0.4759 22 1 1.0481 -12.8725 -1.8629 23 1 2.2599 -13.6282 0.0971 24 1 0.2338 -12.3206 0.3536 25 1 -0.3634 -0.1132 1.0215 26 1 -0.3633 0.9412 -0.4125 27 1 -0.3634 -0.8279 -0.6087 28 1 1.6580 2.1292 0.0004 29 1 4.1175 2.1341 -0.0091 30 1 4.1496 -2.1311 0.0090 31 1 0.8161 -4.9443 0.8485 32 1 0.6477 -4.8574 -0.9213 33 1 0.8043 -7.4403 -0.1664 34 1 3.1933 -8.3919 -1.3346 35 1 3.3610 -8.4778 0.4354 36 1 4.2066 -11.8759 -0.7063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753446464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:52 Heat of formation + Delta-G solvation = -127.348411 kcal Electronic energy + Delta-G solvation = -21997.119380 eV Core-core repulsion = 18278.345909 eV Total energy + Delta-G solvation = -3718.773470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.99780 -40.65891 -39.89445 -37.80817 -37.38556 -36.19999 -34.43069 -33.51599 -32.81018 -30.76994 -28.69041 -27.90711 -25.42273 -24.54063 -23.07289 -21.93538 -21.66476 -19.48238 -19.03211 -18.20818 -17.89175 -17.47453 -17.08789 -16.79432 -16.54351 -16.27596 -16.11573 -15.55695 -15.07740 -14.69353 -14.62842 -14.35514 -14.10790 -13.88111 -13.80819 -13.62159 -13.35360 -13.02887 -12.94539 -12.72347 -12.53287 -12.27317 -12.23698 -12.04251 -11.92334 -11.50968 -11.31017 -10.92434 -10.82606 -10.27845 -9.94619 -9.70489 -8.30349 -6.47066 -0.54330 0.02421 1.01281 1.17993 1.29683 1.44177 1.45853 1.53575 1.57344 2.32411 2.47079 2.53534 3.05003 3.41257 3.63614 3.72116 3.75522 3.96112 4.02317 4.04140 4.13599 4.33479 4.66892 4.73216 4.80129 4.89721 5.02168 5.05814 5.09488 5.20642 5.22837 5.40507 5.43412 5.61266 5.63994 5.81115 6.47604 6.62011 6.76541 7.19502 7.34569 8.81824 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.002489 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.151055 B =11246.415722 C =12508.973978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.015 4.015 3 C -0.110 4.110 4 C -0.060 4.060 5 C -0.066 4.066 6 Cl -0.066 7.066 7 C -0.062 4.062 8 C -0.137 4.137 9 C 0.509 3.491 10 O -0.505 6.505 11 O -0.346 6.346 12 C 0.062 3.938 13 C 0.499 3.501 14 O -0.584 6.584 15 N -0.697 5.697 16 C 0.266 3.734 17 C -0.556 4.556 18 H 0.087 0.913 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.985 3.015 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.255 1.255 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.182 0.818 29 H 0.171 0.829 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.413 0.587 34 H -0.008 1.008 35 H -0.008 1.008 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 27.866 1.791 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.016 4.016 3 C -0.128 4.128 4 C -0.078 4.078 5 C -0.093 4.093 6 Cl -0.037 7.037 7 C -0.081 4.081 8 C -0.139 4.139 9 C 0.355 3.645 10 O -0.396 6.396 11 O -0.262 6.262 12 C -0.014 4.014 13 C 0.284 3.716 14 O -0.465 6.465 15 N -0.349 5.349 16 C 0.144 3.856 17 C -0.594 4.594 18 H 0.105 0.895 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.808 3.192 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.178 1.178 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.094 0.906 28 H 0.200 0.800 29 H 0.188 0.812 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.250 0.750 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.481 27.799 1.731 28.597 hybrid contribution 0.070 -1.541 -0.011 1.543 sum -6.412 26.258 1.720 27.084 Atomic orbital electron populations 1.21158 0.88458 1.04455 1.03861 1.20433 0.98055 0.90867 0.92225 1.21414 0.93012 0.98396 0.99958 1.21724 0.94676 0.97340 0.94051 1.20940 0.85379 0.95109 1.07878 1.98395 1.09356 1.98910 1.97030 1.21375 0.93211 0.98436 0.95051 1.18898 0.92739 0.90293 1.11935 1.21380 0.85948 0.84341 0.72815 1.90787 1.14745 1.87677 1.46348 1.86602 1.41536 1.14665 1.83408 1.22778 0.92070 0.79326 1.07266 1.20699 0.88844 0.85056 0.76971 1.90693 1.17981 1.86417 1.51363 1.46025 1.12182 1.04907 1.71788 1.18629 0.89712 0.82857 0.94389 1.21608 0.94855 0.90590 1.52353 0.89520 1.26063 0.96144 1.03531 0.93848 1.70137 1.10447 1.27042 1.49294 0.85148 0.78343 0.76891 0.78786 1.19614 1.21054 1.17850 0.90012 0.88651 0.90565 0.80026 0.81186 0.84958 0.85510 0.85460 0.75046 0.99026 0.99010 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.73 71.24 0.62 -1.12 16 2 C -0.02 -0.25 5.91 -19.60 -0.12 -0.37 16 3 C -0.11 -1.16 9.66 22.22 0.21 -0.95 16 4 C -0.06 -0.72 9.82 22.35 0.22 -0.50 16 5 C -0.07 -1.24 6.31 22.29 0.14 -1.10 16 6 Cl -0.07 -1.28 28.95 -2.72 -0.08 -1.36 16 7 C -0.06 -1.44 9.39 22.56 0.21 -1.23 16 8 C -0.14 -3.13 5.87 -20.10 -0.12 -3.25 16 9 C 0.51 13.74 7.83 70.33 0.55 14.29 16 10 O -0.51 -13.61 13.13 19.93 0.26 -13.34 16 11 O -0.35 -10.94 9.03 -49.86 -0.45 -11.39 16 12 C 0.06 1.79 5.95 71.23 0.42 2.21 16 13 C 0.50 20.07 7.91 87.65 0.69 20.76 16 14 O -0.58 -29.66 16.50 15.75 0.26 -29.40 16 15 N -0.70 -28.75 5.55 -466.78 -2.59 -31.34 16 16 C 0.27 14.43 5.43 85.63 0.46 14.89 16 17 C -0.56 -29.74 9.28 25.60 0.24 -29.50 16 18 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 19 C 0.00 0.21 5.46 84.65 0.46 0.67 16 20 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 21 Si 0.99 41.87 29.54 68.60 2.03 43.90 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 25 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.09 0.75 8.04 -2.39 -0.02 0.73 16 27 H 0.08 1.43 5.86 -2.39 -0.01 1.42 16 28 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 29 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 30 H 0.13 3.60 7.63 -2.91 -0.02 3.57 16 31 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.13 2.96 8.14 -2.39 -0.02 2.95 16 33 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 34 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -74.38 337.43 4.08 -70.30 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.36 Total: 13.33 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 4.01 Total: 14.82 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.30 Total: -86.86 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: 0.07 Total: -54.13 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -74.38 4.08 -70.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753446464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.045 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds