Wall clock time and date at job start Fri Apr 10 2020 22:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 120.00713 * 2 1 4 4 C 1.38219 * 120.01316 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02733 * 0.02562 * 4 3 2 6 6 C 1.38197 * 120.01557 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00724 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47486 * 264.99816 * 7 6 5 9 9 O 1.20833 * 119.99747 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00262 * 179.72204 * 8 7 6 11 11 C 1.45202 * 116.99836 * 180.27336 * 10 8 7 12 12 C 1.50701 * 109.46859 * 180.02562 * 11 10 8 13 13 O 1.21285 * 120.00079 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99566 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99580 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00075 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99723 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00524 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47140 * 60.00478 * 19 17 15 21 21 H 1.48501 * 109.46843 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47325 * 300.00132 * 19 17 15 23 23 C 1.38333 * 120.00977 * 180.23537 * 2 1 3 24 24 Cl 1.73599 * 120.00951 * 0.04072 * 23 2 1 25 25 H 1.08996 * 109.47143 * 89.99905 * 1 2 3 26 26 H 1.09002 * 109.46853 * 209.99714 * 1 2 3 27 27 H 1.08998 * 109.46973 * 329.99687 * 1 2 3 28 28 H 1.08000 * 119.99200 * 359.97438 * 3 2 1 29 29 H 1.08008 * 119.98590 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.99310 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47069 * 145.00018 * 7 6 5 32 32 H 1.09000 * 109.47237 * 25.00524 * 7 6 5 33 33 H 1.08998 * 109.47630 * 300.00638 * 11 10 8 34 34 H 1.09004 * 109.46770 * 60.01042 * 11 10 8 35 35 H 0.97001 * 120.00823 * 359.97438 * 14 12 11 36 36 H 0.96995 * 120.00385 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0003 0.0005 6 6 3.5826 -1.1971 0.0005 7 6 4.3370 -2.5016 0.0011 8 6 4.4818 -2.9989 -1.4141 9 8 4.0202 -2.3592 -2.3294 10 8 5.1289 -4.1492 -1.6584 11 6 5.2355 -4.5638 -3.0459 12 6 5.9874 -5.8674 -3.1243 13 8 6.3932 -6.3954 -2.1105 14 7 6.2090 -6.4465 -4.3209 15 6 6.8927 -7.6328 -4.3922 16 1 7.2532 -8.1033 -3.4895 17 6 7.1207 -8.2301 -5.6258 18 7 6.6816 -7.6579 -6.7243 19 14 8.0528 -9.8461 -5.7230 20 1 7.3249 -10.8846 -4.9507 21 1 8.1623 -10.2697 -7.1421 22 1 9.4127 -9.6682 -5.1537 23 6 2.1989 -1.1979 -0.0049 24 17 1.3314 -2.7016 -0.0122 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6583 2.1324 -0.0004 29 1 4.1203 2.1328 0.0001 30 1 5.3525 0.0011 0.0005 31 1 3.7899 -3.2375 0.5905 32 1 5.3249 -2.3498 0.4359 33 1 4.2373 -4.6947 -3.4637 34 1 5.7696 -3.8012 -3.6129 35 1 5.8843 -6.0245 -5.1317 36 1 6.8411 -8.0747 -7.5854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753614459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:56 Heat of formation + Delta-G solvation = -111.774761 kcal Electronic energy + Delta-G solvation = -22222.854707 eV Core-core repulsion = 18504.756561 eV Total energy + Delta-G solvation = -3718.098146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56666 -39.56719 -38.09575 -36.63775 -36.10117 -33.98823 -33.97989 -32.11509 -31.36773 -29.11764 -27.70264 -27.14852 -24.60233 -22.68255 -21.88394 -20.35993 -19.55518 -18.05944 -17.57447 -17.10632 -16.71122 -16.26741 -15.92497 -15.46574 -15.19911 -14.55926 -14.27012 -14.13831 -14.01234 -13.85597 -13.34362 -12.97409 -12.91172 -12.55479 -12.50094 -12.08119 -11.94516 -11.72796 -11.67421 -11.60948 -11.51267 -11.10336 -10.86721 -10.48290 -10.41208 -10.37601 -10.27295 -9.58477 -9.02715 -8.86500 -8.50382 -8.07159 -6.48741 -3.90883 0.85529 0.94647 1.94758 2.35374 2.73686 3.16310 3.23367 3.27723 3.40046 3.75417 4.13123 4.22061 4.38374 4.57284 4.71802 4.90248 4.95296 5.03952 5.12260 5.16440 5.19366 5.32265 5.34666 5.41242 5.51859 5.61059 5.72183 5.81345 5.98888 6.05626 6.07696 6.14205 6.50971 6.67163 7.48635 7.87335 7.98382 8.49967 9.08131 9.40652 9.90734 10.68480 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.030834 B = 0.002536 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.856618 B =11037.326690 C =11258.368973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.077 4.077 3 C -0.108 4.108 4 C -0.111 4.111 5 C -0.098 4.098 6 C -0.060 4.060 7 C -0.080 4.080 8 C 0.461 3.539 9 O -0.504 6.504 10 O -0.325 6.325 11 C 0.061 3.939 12 C 0.439 3.561 13 O -0.576 6.576 14 N -0.553 5.553 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.021 4.021 24 Cl -0.061 7.061 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.176 18.330 12.785 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.077 4.077 3 C -0.127 4.127 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.061 4.061 7 C -0.117 4.117 8 C 0.303 3.697 9 O -0.392 6.392 10 O -0.240 6.240 11 C -0.016 4.016 12 C 0.224 3.776 13 O -0.460 6.460 14 N -0.190 5.190 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.047 4.047 24 Cl -0.032 7.032 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.228 0.772 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.093 17.927 12.954 24.311 hybrid contribution 0.168 -0.598 -0.916 1.106 sum -9.924 17.329 12.038 23.317 Atomic orbital electron populations 1.20873 0.90201 1.03391 1.03104 1.19744 0.96787 0.91299 0.99916 1.21007 0.94263 0.97005 1.00380 1.21185 0.94244 0.98154 0.99302 1.21000 1.00273 0.91079 0.99301 1.19149 0.91392 0.94656 1.00889 1.20309 1.03694 0.95202 0.92498 1.23354 0.75148 0.79171 0.91980 1.90675 1.45423 1.56657 1.46460 1.86538 1.68728 1.38132 1.30570 1.22742 1.02009 0.97387 0.79490 1.19324 0.86447 0.86738 0.85140 1.90557 1.55382 1.65476 1.34583 1.41702 1.49561 1.21544 1.06225 1.19678 1.31205 0.97620 0.94684 0.87668 1.25311 0.97839 0.99953 0.94645 1.69605 1.45812 1.40098 0.98317 0.85858 0.79841 0.81058 0.77127 1.19748 1.20874 1.19751 1.20680 0.91607 0.87214 1.05233 1.98374 1.76461 1.31749 1.96650 0.90531 0.90774 0.91092 0.85137 0.85200 0.84915 0.86254 0.86102 0.89586 0.89580 0.77156 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.61 36.01 0.35 -0.58 16 2 C -0.08 -0.76 5.88 -104.59 -0.62 -1.37 16 3 C -0.11 -0.91 9.70 -39.59 -0.38 -1.30 16 4 C -0.11 -0.93 10.05 -39.58 -0.40 -1.32 16 5 C -0.10 -0.96 9.68 -39.59 -0.38 -1.34 16 6 C -0.06 -0.69 4.38 -104.59 -0.46 -1.15 16 7 C -0.08 -0.94 5.45 -29.04 -0.16 -1.10 16 8 C 0.46 7.42 7.95 36.00 0.29 7.70 16 9 O -0.50 -9.04 15.78 -18.76 -0.30 -9.34 16 10 O -0.33 -6.17 9.75 -45.90 -0.45 -6.61 16 11 C 0.06 1.20 5.94 36.01 0.21 1.41 16 12 C 0.44 10.75 7.86 -10.99 -0.09 10.66 16 13 O -0.58 -16.18 16.08 -14.11 -0.23 -16.40 16 14 N -0.55 -14.17 5.29 -10.97 -0.06 -14.23 16 15 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 16 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 19 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 23 C -0.02 -0.24 6.31 -39.50 -0.25 -0.49 16 24 Cl -0.06 -0.74 25.75 -51.86 -1.34 -2.07 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.59 6.91 -51.93 -0.36 0.23 16 27 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 29 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.12 1.32 7.14 -51.93 -0.37 0.95 16 32 H 0.12 1.11 8.05 -51.93 -0.42 0.70 16 33 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 34 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 35 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -33.38 336.71 -7.65 -41.03 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -3.94 Total: 7.16 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.13 Total: 3.12 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.67 Total: -37.78 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.97 Total: -32.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.34 Total: -2.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.38 -7.65 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753614459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.742 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds