Wall clock time and date at job start Fri Apr 10 2020 22:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.99601 * 2 1 4 4 C 1.38216 * 120.02599 * 179.72584 * 3 2 1 5 5 C 1.38240 * 120.01429 * 0.54711 * 4 3 2 6 6 C 1.50703 * 120.00679 * 179.74905 * 5 4 3 7 7 C 1.50701 * 109.47064 * 264.72351 * 6 5 4 8 8 O 1.20826 * 119.99939 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00046 * 179.97438 * 7 6 5 10 10 C 1.45192 * 117.00018 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.47278 * 180.02562 * 10 9 7 12 12 O 1.21297 * 119.99775 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00197 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99877 * 179.97438 * 13 11 10 15 15 H 1.07994 * 120.00065 * 0.02562 * 14 13 11 16 16 C 1.38950 * 119.99702 * 179.97438 * 14 13 11 17 17 N 1.31412 * 119.99787 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00085 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47120 * 89.99966 * 18 16 14 20 20 H 1.48503 * 109.46943 * 209.99636 * 18 16 14 21 21 H 1.48497 * 109.47011 * 329.99476 * 18 16 14 22 22 C 1.38328 * 119.98397 * 359.47484 * 5 4 3 23 23 Cl 1.73602 * 120.01166 * 180.27197 * 22 5 4 24 24 C 1.38194 * 119.99153 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47166 * 269.98122 * 1 2 3 26 26 H 1.09004 * 109.46889 * 29.97517 * 1 2 3 27 27 H 1.08999 * 109.47506 * 149.97875 * 1 2 3 28 28 H 1.07996 * 119.98317 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.99282 * 180.30012 * 4 3 2 30 30 H 1.09002 * 109.47152 * 144.72444 * 6 5 4 31 31 H 1.09001 * 109.46980 * 24.72544 * 6 5 4 32 32 H 1.09001 * 109.47630 * 300.00318 * 10 9 7 33 33 H 1.08998 * 109.47321 * 60.00129 * 10 9 7 34 34 H 0.96999 * 119.99738 * 0.02562 * 13 11 10 35 35 H 0.97003 * 119.99934 * 180.02562 * 17 16 14 36 36 H 1.07997 * 120.00645 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 0.0057 5 6 4.2725 0.0016 0.0000 6 6 5.7796 0.0026 0.0006 7 6 6.2825 -0.1207 -1.4147 8 8 5.4977 -0.2007 -2.3299 9 8 7.6023 -0.1406 -1.6587 10 6 8.0145 -0.2610 -3.0456 11 6 9.5195 -0.2669 -3.1237 12 8 10.1797 -0.1789 -2.1100 13 7 10.1319 -0.3711 -4.3198 14 6 11.5010 -0.3759 -4.3908 15 1 12.0888 -0.2967 -3.4884 16 6 12.1323 -0.4838 -5.6239 17 7 13.4446 -0.4890 -5.6920 18 14 11.1155 -0.6216 -7.1849 19 1 10.8452 0.7367 -7.7210 20 1 11.8637 -1.4125 -8.1948 21 1 9.8294 -1.2984 -6.8798 22 6 3.5815 -1.1967 -0.0004 23 17 4.4500 -2.6999 -0.0004 24 6 2.1978 -1.1969 -0.0005 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6579 2.1326 0.0004 29 1 4.1198 2.1339 0.0106 30 1 6.1433 -0.8391 0.5900 31 1 6.1421 0.9342 0.4352 32 1 7.6258 -1.1908 -3.4609 33 1 7.6241 0.5824 -3.6152 34 1 9.6038 -0.4418 -5.1304 35 1 13.8854 -0.5640 -6.5529 36 1 1.6577 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761990549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:05 Heat of formation + Delta-G solvation = -105.856029 kcal Electronic energy + Delta-G solvation = -22145.451954 eV Core-core repulsion = 18427.610463 eV Total energy + Delta-G solvation = -3717.841490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64133 -39.63508 -38.29071 -36.74697 -36.21102 -34.17144 -34.04833 -31.79117 -31.08595 -30.46570 -28.51379 -25.98569 -24.36643 -23.18580 -21.87242 -20.59756 -19.62856 -18.58060 -17.67156 -16.84759 -16.78328 -16.12917 -15.96400 -15.56337 -15.50483 -14.86415 -14.26853 -14.24897 -14.14382 -13.60995 -13.33958 -13.08072 -13.02130 -12.79737 -12.55653 -12.23478 -12.12257 -12.07891 -11.93725 -11.56501 -11.51550 -11.25476 -11.01074 -10.64229 -10.49387 -10.48096 -10.04110 -9.66549 -9.15453 -8.87028 -8.64717 -8.28232 -6.38288 -3.91069 0.77712 0.92202 1.88359 2.27262 2.63935 2.99832 3.04229 3.12701 3.32838 3.57042 4.04737 4.18995 4.37985 4.44556 4.51325 4.72879 4.84237 5.00188 5.04777 5.12138 5.15469 5.19764 5.26858 5.36122 5.43868 5.49357 5.57027 5.67641 5.70010 5.83816 6.02202 6.13158 6.45467 6.55763 7.46005 7.83026 8.02182 8.49076 8.84778 9.31055 9.66980 10.74009 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.026547 B = 0.002627 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.492367 B =10654.426193 C =10789.918584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 C -0.116 4.116 4 C -0.087 4.087 5 C -0.070 4.070 6 C -0.079 4.079 7 C 0.462 3.538 8 O -0.504 6.504 9 O -0.324 6.324 10 C 0.058 3.942 11 C 0.448 3.552 12 O -0.557 6.557 13 N -0.580 5.580 14 C -0.308 4.308 15 H 0.122 0.878 16 C 0.045 3.955 17 N -0.875 5.875 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.268 1.268 22 C -0.014 4.014 23 Cl -0.063 7.063 24 C -0.112 4.112 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.373 0.627 35 H 0.275 0.725 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.564 1.229 10.719 28.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.134 4.134 4 C -0.105 4.105 5 C -0.071 4.071 6 C -0.116 4.116 7 C 0.304 3.696 8 O -0.393 6.393 9 O -0.238 6.238 10 C -0.019 4.019 11 C 0.233 3.767 12 O -0.439 6.439 13 N -0.220 5.220 14 C -0.436 4.436 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.514 5.514 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.193 1.193 22 C -0.040 4.040 23 Cl -0.034 7.034 24 C -0.130 4.130 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.206 0.794 35 H 0.086 0.914 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.025 1.109 10.976 28.267 hybrid contribution -0.544 -0.327 -1.608 1.729 sum -26.569 0.782 9.368 28.183 Atomic orbital electron populations 1.20809 0.90445 1.03224 1.02617 1.19883 0.96415 0.92437 0.98619 1.21091 0.93926 0.97883 1.00499 1.21004 0.94295 0.96965 0.98283 1.19141 0.93931 0.92153 1.01900 1.20306 0.91513 1.07490 0.92315 1.23401 0.81033 0.73046 0.92080 1.90670 1.56885 1.45224 1.46475 1.86546 1.24369 1.82691 1.30229 1.22740 0.95834 1.03386 0.79963 1.19206 0.87281 0.85413 0.84795 1.90604 1.65709 1.53342 1.34195 1.42041 1.07821 1.66157 1.06007 1.19424 0.79056 1.48216 0.96886 0.86004 1.25038 0.95682 0.97303 0.97900 1.69616 1.07349 1.48304 1.26180 0.86679 0.80157 0.79098 0.83584 1.19409 1.19951 1.19349 1.20789 0.92527 0.86856 1.03857 1.98390 1.76625 1.31714 1.96689 1.20883 0.91621 0.98816 1.01719 0.90804 0.91136 0.91245 0.85231 0.84808 0.86181 0.86059 0.89460 0.89448 0.79394 0.91405 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.00 0.36 -0.25 16 2 C -0.07 -0.60 5.88 -104.63 -0.62 -1.21 16 3 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 4 C -0.09 -0.80 9.68 -39.59 -0.38 -1.19 16 5 C -0.07 -0.77 4.38 -104.59 -0.46 -1.23 16 6 C -0.08 -0.89 5.46 -29.03 -0.16 -1.04 16 7 C 0.46 7.05 7.95 36.01 0.29 7.34 16 8 O -0.50 -8.58 15.78 -18.75 -0.30 -8.88 16 9 O -0.32 -5.85 9.75 -45.90 -0.45 -6.30 16 10 C 0.06 1.07 5.94 36.01 0.21 1.28 16 11 C 0.45 10.50 7.86 -10.98 -0.09 10.42 16 12 O -0.56 -15.41 16.08 -14.12 -0.23 -15.64 16 13 N -0.58 -13.93 5.09 -10.96 -0.06 -13.98 16 14 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 15 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 16 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 17 N -0.88 -25.26 13.96 55.50 0.77 -24.49 16 18 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 22 C -0.01 -0.15 6.31 -39.50 -0.25 -0.40 16 23 Cl -0.06 -0.74 27.40 -51.86 -1.42 -2.16 16 24 C -0.11 -1.05 9.49 -39.55 -0.38 -1.43 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 27 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.12 1.26 7.13 -51.93 -0.37 0.89 16 31 H 0.12 1.05 8.05 -51.93 -0.42 0.63 16 32 H 0.09 1.45 8.13 -51.93 -0.42 1.02 16 33 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 34 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 35 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -34.40 336.24 -7.37 -41.77 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.95 Total: 6.84 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.10 Total: 3.28 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.72 Total: -38.47 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.97 Total: -30.81 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.42 Total: -2.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.40 -7.37 -41.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761990549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.085 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds