Wall clock time and date at job start Fri Apr 10 2020 22:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37893 * 120.07320 * 2 1 4 4 C 1.38504 * 120.13738 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.86197 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.27634 * 359.70504 * 4 3 2 7 7 C 1.37852 * 120.13444 * 0.55339 * 6 4 3 8 8 C 1.39649 * 120.06628 * 179.97438 * 2 1 3 9 9 C 1.47654 * 120.13790 * 0.04765 * 8 2 1 10 10 O 1.21480 * 120.00291 * 353.74293 * 9 8 2 11 11 O 1.34727 * 120.00075 * 173.74651 * 9 8 2 12 12 C 1.45196 * 116.99721 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.47020 * 179.97438 * 12 11 9 14 14 O 1.21275 * 119.99822 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00283 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00280 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47251 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00009 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99857 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00386 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46786 * 89.99697 * 21 19 17 23 23 H 1.48492 * 109.47291 * 209.99930 * 21 19 17 24 24 H 1.48502 * 109.46797 * 330.00268 * 21 19 17 25 25 H 1.08998 * 109.47623 * 263.44127 * 1 2 3 26 26 H 1.09011 * 109.47028 * 23.44014 * 1 2 3 27 27 H 1.09005 * 109.47218 * 143.43344 * 1 2 3 28 28 H 1.08001 * 119.93364 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.93180 * 180.29429 * 6 4 3 30 30 H 1.07997 * 120.06926 * 179.74502 * 7 6 4 31 31 H 1.09005 * 109.47125 * 299.99650 * 12 11 9 32 32 H 1.08994 * 109.47716 * 59.99466 * 12 11 9 33 33 H 0.97006 * 119.99904 * 0.02562 * 15 13 12 34 34 H 1.09002 * 109.47272 * 300.00258 * 16 15 13 35 35 H 1.09002 * 109.46864 * 60.00546 * 16 15 13 36 36 H 0.97000 * 120.00410 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1933 0.0000 4 6 3.5830 1.1949 0.0005 5 17 4.4456 2.7013 -0.0001 6 6 4.2828 -0.0008 0.0072 7 6 3.6035 -1.2003 0.0019 8 6 2.2066 -1.2086 0.0005 9 6 1.4729 -2.4899 0.0001 10 8 0.2634 -2.4974 0.1138 11 8 2.1447 -3.6509 -0.1265 12 6 1.3585 -4.8715 -0.1193 13 6 2.2736 -6.0593 -0.2709 14 8 3.4704 -5.8933 -0.3752 15 7 1.7620 -7.3060 -0.2905 16 6 2.6515 -8.4606 -0.4384 17 6 1.8356 -9.7276 -0.4308 18 1 0.7617 -9.6778 -0.3267 19 6 2.4600 -10.9504 -0.5568 20 7 3.7675 -11.0111 -0.6840 21 14 1.4485 -12.5209 -0.5481 22 1 1.0496 -12.8604 -1.9377 23 1 2.2589 -13.6285 0.0189 24 1 0.2328 -12.3221 0.2812 25 1 -0.3634 -0.1174 1.0209 26 1 -0.3634 0.9430 -0.4088 27 1 -0.3634 -0.8254 -0.6123 28 1 1.6580 2.1287 -0.0004 29 1 5.3628 0.0069 0.0124 30 1 4.1501 -2.1318 0.0030 31 1 0.8156 -4.9485 0.8228 32 1 0.6493 -4.8519 -0.9467 33 1 0.8047 -7.4388 -0.2075 34 1 3.1934 -8.3835 -1.3810 35 1 3.3616 -8.4804 0.3884 36 1 4.2068 -11.8714 -0.7723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767573865.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:08 Heat of formation + Delta-G solvation = -108.039544 kcal Electronic energy + Delta-G solvation = -21888.950949 eV Core-core repulsion = 18171.014775 eV Total energy + Delta-G solvation = -3717.936175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98556 -39.48153 -38.61996 -36.99389 -36.44462 -34.29006 -33.06636 -32.44855 -31.73068 -29.24296 -27.63499 -26.65279 -24.32477 -22.78490 -22.21094 -21.05151 -19.98030 -18.30905 -17.56806 -16.96576 -16.74088 -16.43676 -15.90663 -15.57738 -15.14160 -14.88558 -14.75299 -14.23528 -14.13604 -13.66044 -13.24620 -13.19513 -12.93061 -12.76583 -12.62211 -12.45549 -12.02687 -11.88151 -11.80989 -11.68802 -11.27053 -11.03964 -10.94511 -10.76832 -10.38142 -10.36870 -9.46936 -9.36227 -9.23043 -9.17901 -8.81081 -8.02762 -6.22055 -4.29649 0.16499 0.82381 1.60711 2.18247 2.28937 3.12428 3.21477 3.24077 3.27827 3.30073 3.89231 4.25786 4.29754 4.34356 4.52781 4.67019 4.82885 5.03771 5.06586 5.13977 5.18339 5.28912 5.31172 5.43147 5.47098 5.67287 5.72851 5.79730 5.97881 6.20541 6.34869 7.18924 7.26353 7.42510 7.52205 7.60028 7.89140 8.45872 8.67678 8.92192 9.36866 10.88026 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.033400 B = 0.002161 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.114302 B =12954.294158 C =13762.373634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.005 4.005 3 C -0.130 4.130 4 C 0.002 3.998 5 Cl -0.062 7.062 6 C -0.132 4.132 7 C -0.039 4.039 8 C -0.125 4.125 9 C 0.508 3.492 10 O -0.500 6.500 11 O -0.324 6.324 12 C 0.050 3.950 13 C 0.500 3.500 14 O -0.534 6.534 15 N -0.706 5.706 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.393 0.607 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 25.536 1.711 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.005 4.005 3 C -0.148 4.148 4 C -0.025 4.025 5 Cl -0.033 7.033 6 C -0.150 4.150 7 C -0.057 4.057 8 C -0.126 4.126 9 C 0.353 3.647 10 O -0.390 6.390 11 O -0.239 6.239 12 C -0.027 4.027 13 C 0.283 3.717 14 O -0.412 6.412 15 N -0.356 5.356 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.173 0.827 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.226 0.774 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.633 25.580 1.644 25.889 hybrid contribution -0.894 -0.899 0.054 1.269 sum -4.527 24.681 1.698 25.151 Atomic orbital electron populations 1.21171 0.89044 1.03705 1.04183 1.19973 0.97244 0.90414 0.92917 1.20880 0.91818 0.98520 1.03597 1.21273 0.92611 0.87587 1.00998 1.98394 1.76838 1.31566 1.96531 1.21086 1.01196 0.90171 1.02586 1.21614 0.92753 0.99135 0.92232 1.19052 0.93710 0.90167 1.09707 1.21072 0.85882 0.84519 0.73226 1.90796 1.14753 1.87684 1.45807 1.86596 1.40465 1.13942 1.82863 1.22902 0.93671 0.81495 1.04669 1.19865 0.88838 0.84117 0.78929 1.90706 1.15347 1.85595 1.49526 1.46369 1.11814 1.05783 1.71643 1.19183 0.89495 0.80428 0.97789 1.21203 0.93788 0.90546 1.52868 0.91751 1.24953 0.95054 0.99391 0.94602 1.69967 1.08181 1.25988 1.48023 0.86386 0.79842 0.82161 0.78359 1.20417 1.20970 1.19714 0.89948 0.91662 0.88394 0.83970 0.83842 0.82714 0.88322 0.88337 0.77394 0.95240 0.95224 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.73 36.00 0.31 -0.76 16 2 C 0.00 -0.05 5.91 -104.22 -0.62 -0.66 16 3 C -0.13 -1.06 9.44 -39.61 -0.37 -1.44 16 4 C 0.00 0.02 6.33 -39.37 -0.25 -0.23 16 5 Cl -0.06 -0.49 28.95 -51.86 -1.50 -1.99 16 6 C -0.13 -1.15 9.81 -39.61 -0.39 -1.54 16 7 C -0.04 -0.40 9.61 -39.18 -0.38 -0.78 16 8 C -0.13 -1.41 5.87 -104.98 -0.62 -2.02 16 9 C 0.51 6.74 7.83 34.58 0.27 7.01 16 10 O -0.50 -6.93 13.13 -19.25 -0.25 -7.18 16 11 O -0.32 -4.88 9.02 -47.25 -0.43 -5.31 16 12 C 0.05 0.72 5.95 36.01 0.21 0.94 16 13 C 0.50 9.66 7.91 -10.98 -0.09 9.58 16 14 O -0.53 -12.62 16.50 -14.10 -0.23 -12.86 16 15 N -0.71 -14.19 5.55 -61.47 -0.34 -14.54 16 16 C 0.25 6.45 5.43 -5.19 -0.03 6.43 16 17 C -0.55 -14.42 9.28 -34.44 -0.32 -14.74 16 18 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.88 -25.57 13.29 55.43 0.74 -24.84 16 21 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.41 8.04 -51.92 -0.42 0.00 16 27 H 0.10 1.00 5.85 -51.93 -0.30 0.70 16 28 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 29 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.16 1.61 7.63 -52.49 -0.40 1.21 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.39 6.60 8.32 -40.82 -0.34 6.26 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -31.91 337.42 -8.26 -40.17 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.95 Total: 2.57 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.35 Total: 3.43 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.40 Total: -39.37 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.91 Total: -25.34 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.91 -8.26 -40.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767573865.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.865 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds