Wall clock time and date at job start Fri Apr 10 2020 22:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31289 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48500 * 109.47185 * 274.97627 * 3 2 1 5 5 H 1.48493 * 109.47464 * 34.98020 * 3 2 1 6 6 H 1.48507 * 109.47150 * 154.97908 * 3 2 1 7 7 C 1.38987 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00370 * 185.93521 * 7 2 1 9 9 N 1.37320 * 120.00252 * 5.94309 * 7 2 1 10 10 C 1.36488 * 126.06917 * 174.12850 * 9 7 2 11 11 C 1.35702 * 107.50653 * 179.97438 * 10 9 7 12 12 N 1.40533 * 126.08671 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00236 * 179.97438 * 12 11 10 14 14 O 1.21612 * 119.99848 * 0.02562 * 13 12 11 15 15 C 1.47528 * 120.00270 * 180.02562 * 13 12 11 16 16 C 1.39930 * 120.17793 * 89.73056 * 15 13 12 17 17 F 1.35103 * 120.07470 * 359.97438 * 16 15 13 18 18 C 1.38173 * 119.85205 * 179.76943 * 16 15 13 19 19 C 1.38335 * 120.21277 * 0.48206 * 18 16 15 20 20 C 1.38448 * 120.35841 * 359.76680 * 19 18 16 21 21 F 1.35100 * 119.92561 * 179.97438 * 20 19 18 22 22 C 1.38438 * 120.14517 * 0.02562 * 20 19 18 23 23 F 1.35105 * 120.10617 * 179.97438 * 22 20 19 24 24 C 1.40661 * 107.82836 * 359.97438 * 11 10 9 25 25 N 1.30907 * 108.39087 * 0.02562 * 24 11 10 26 26 H 0.97003 * 119.99737 * 0.02562 * 1 2 3 27 27 H 1.08001 * 126.25317 * 0.25313 * 10 9 7 28 28 H 0.97006 * 120.00048 * 0.02562 * 12 11 10 29 29 H 1.08006 * 119.89192 * 180.21071 * 18 16 15 30 30 H 1.08000 * 119.82357 * 179.75299 * 19 18 16 31 31 H 1.08002 * 125.80843 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3893 2.1071 -1.3948 5 1 1.5011 2.6200 0.8026 6 1 3.5932 1.4120 0.5922 7 6 2.0078 -1.2037 0.0005 8 1 3.0835 -1.2063 0.0973 9 7 1.3267 -2.3898 -0.1221 10 6 1.8862 -3.6283 -0.2490 11 6 0.8730 -4.5263 -0.3417 12 7 1.0106 -5.9175 -0.4850 13 6 -0.0850 -6.6984 -0.5651 14 8 -1.1927 -6.1989 -0.5138 15 6 0.0594 -8.1589 -0.7149 16 6 0.1339 -8.9782 0.4170 17 9 0.0744 -8.4337 1.6520 18 6 0.2643 -10.3457 0.2688 19 6 0.3313 -10.9058 -0.9944 20 6 0.2636 -10.1029 -2.1203 21 9 0.3305 -10.6591 -3.3497 22 6 0.1287 -8.7314 -1.9890 23 9 0.0632 -7.9486 -3.0883 24 6 -0.3394 -3.8168 -0.2687 25 7 -0.0655 -2.5434 -0.1381 26 1 -0.4850 0.8401 -0.0004 27 1 2.9423 -3.8531 -0.2674 28 1 1.8941 -6.3159 -0.5255 29 1 0.3185 -10.9790 1.1420 30 1 0.4373 -11.9751 -1.1029 31 1 -1.3281 -4.2491 -0.3130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771997246.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:11 Heat of formation + Delta-G solvation = -72.654572 kcal Electronic energy + Delta-G solvation = -24438.329739 eV Core-core repulsion = 20078.963738 eV Total energy + Delta-G solvation = -4359.366001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.062 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.74611 -50.25081 -49.79419 -41.87058 -40.68600 -39.25060 -36.09111 -35.09054 -32.79146 -32.19349 -31.21705 -29.67045 -27.06683 -25.59963 -24.09618 -23.06504 -22.36332 -21.38435 -19.82322 -19.40352 -19.10994 -18.97053 -17.81979 -17.73889 -17.43919 -17.04079 -17.02051 -16.65953 -16.18448 -16.01175 -15.93368 -15.65321 -15.54962 -15.24552 -15.06050 -14.86946 -14.14267 -13.54273 -13.48793 -13.42815 -13.04896 -12.94818 -12.92421 -12.81783 -12.07530 -11.99536 -11.19266 -11.09786 -10.88180 -10.40181 -10.16644 -9.86603 -8.66309 -8.51029 -6.29477 -0.60306 -0.45436 0.95596 1.35844 1.39118 1.58036 1.77319 1.78666 1.94548 2.14986 2.34105 2.39392 2.73694 2.83902 3.04811 3.17518 3.30921 3.56665 3.61485 4.14911 4.36513 4.44058 4.52356 4.60765 4.71243 4.82554 4.95126 4.96431 5.19960 5.28369 5.42828 5.90148 6.19829 6.45263 6.66340 7.06694 7.40065 7.59440 8.48729 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.003074 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.121950 B = 9105.885791 C = 9466.048467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.006 4.006 3 Si 1.022 2.978 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.354 4.354 8 H 0.144 0.856 9 N -0.163 5.163 10 C -0.073 4.073 11 C -0.055 4.055 12 N -0.597 5.597 13 C 0.545 3.455 14 O -0.559 6.559 15 C -0.181 4.181 16 C 0.145 3.855 17 F -0.128 7.128 18 C -0.104 4.104 19 C -0.049 4.049 20 C 0.060 3.940 21 F -0.124 7.124 22 C 0.108 3.892 23 F -0.131 7.131 24 C -0.057 4.057 25 N -0.309 5.309 26 H 0.278 0.722 27 H 0.192 0.808 28 H 0.421 0.579 29 H 0.205 0.795 30 H 0.212 0.788 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 -23.197 -0.234 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.218 4.218 3 Si 0.841 3.159 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.164 1.164 7 C -0.485 4.485 8 H 0.161 0.839 9 N 0.068 4.932 10 C -0.224 4.224 11 C -0.161 4.161 12 N -0.241 5.241 13 C 0.331 3.669 14 O -0.438 6.438 15 C -0.186 4.186 16 C 0.125 3.875 17 F -0.106 7.106 18 C -0.123 4.123 19 C -0.067 4.067 20 C 0.040 3.960 21 F -0.102 7.102 22 C 0.087 3.913 23 F -0.110 7.110 24 C -0.232 4.232 25 N -0.140 5.140 26 H 0.087 0.913 27 H 0.209 0.791 28 H 0.258 0.742 29 H 0.222 0.778 30 H 0.228 0.772 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.478 -21.496 -0.113 22.184 hybrid contribution 0.427 0.398 -0.527 0.786 sum 5.905 -21.098 -0.641 21.919 Atomic orbital electron populations 1.70402 1.08560 1.29289 1.36779 1.26941 0.96466 1.04474 0.93948 0.84537 0.78559 0.73906 0.78943 1.19187 1.20092 1.16360 1.20702 0.93558 0.80885 1.53385 0.83857 1.44887 1.03574 1.05265 1.39458 1.21983 0.98761 0.84427 1.17204 1.17324 0.93279 0.83337 1.22114 1.42337 1.09260 1.03599 1.68864 1.18130 0.84384 0.86338 0.78069 1.90722 1.27029 1.74915 1.51134 1.19582 1.12470 0.93239 0.93316 1.17666 0.99971 0.92179 0.77693 1.91596 1.93147 1.86756 1.39140 1.21499 0.99530 0.90520 1.00724 1.21578 0.94416 1.03038 0.87704 1.17642 1.07623 0.88038 0.82720 1.91573 1.93902 1.84671 1.40086 1.17529 1.04011 0.88226 0.81532 1.91568 1.93470 1.74693 1.51240 1.24124 0.98832 0.91228 1.08970 1.78166 0.92235 1.16215 1.27434 0.91258 0.79098 0.74216 0.77755 0.77150 0.81807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.99 11.84 21.66 0.26 -47.74 16 2 C -0.01 -0.33 5.50 84.95 0.47 0.14 16 3 Si 1.02 38.68 29.56 68.60 2.03 40.71 16 4 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.28 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.24 -8.14 7.11 99.48 0.71 -7.44 16 7 C -0.35 -18.88 10.24 84.01 0.86 -18.02 16 8 H 0.14 6.57 7.84 -2.91 -0.02 6.54 16 9 N -0.16 -9.24 3.74 -190.00 -0.71 -9.95 16 10 C -0.07 -3.46 11.49 83.38 0.96 -2.50 16 11 C -0.05 -2.63 6.90 37.75 0.26 -2.37 16 12 N -0.60 -22.53 5.46 -306.77 -1.68 -24.21 16 13 C 0.55 21.09 6.51 86.69 0.56 21.65 16 14 O -0.56 -26.97 14.25 -4.07 -0.06 -27.03 16 15 C -0.18 -4.96 5.64 -20.03 -0.11 -5.07 16 16 C 0.15 2.95 7.29 22.66 0.17 3.11 16 17 F -0.13 -3.21 16.83 44.97 0.76 -2.45 16 18 C -0.10 -0.93 10.01 22.28 0.22 -0.71 16 19 C -0.05 -0.36 10.01 22.34 0.22 -0.14 16 20 C 0.06 1.00 7.29 22.37 0.16 1.16 16 21 F -0.12 -2.25 17.18 44.97 0.77 -1.48 16 22 C 0.11 2.69 7.30 22.71 0.17 2.86 16 23 F -0.13 -4.12 16.74 44.97 0.75 -3.36 16 24 C -0.06 -3.22 10.85 85.42 0.93 -2.29 16 25 N -0.31 -19.11 10.42 -56.46 -0.59 -19.70 16 26 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.19 7.04 8.06 -2.91 -0.02 7.02 16 28 H 0.42 11.94 8.81 -92.70 -0.82 11.13 16 29 H 0.21 0.13 8.06 -2.91 -0.02 0.10 16 30 H 0.21 -0.39 8.06 -2.91 -0.02 -0.41 16 31 H 0.17 9.50 5.91 -2.91 -0.02 9.48 16 Total: -1.00 -82.45 301.39 6.82 -75.63 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.42 Total: 21.75 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 4.86 Total: -2.18 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -2.72 Total: -101.59 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.06 Total: -27.03 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 2.28 Total: -7.29 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -82.45 6.82 -75.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771997246.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.973 kcal (2) G-P(sol) polarization free energy of solvation -82.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds