Wall clock time and date at job start Fri Apr 10 2020 22:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 109.47038 * 2 1 4 4 S 1.80998 * 109.47454 * 119.99932 * 2 1 3 5 5 C 1.76199 * 99.99862 * 70.04205 * 4 2 1 6 6 C 1.39068 * 120.19446 * 6.20883 * 5 4 2 7 7 C 1.37884 * 120.06693 * 179.97438 * 6 5 4 8 8 C 1.38709 * 120.46466 * 359.97159 * 7 6 5 9 9 N 1.48019 * 119.80356 * 180.02562 * 8 7 6 10 10 O 1.31699 * 119.99851 * 359.97438 * 9 8 7 11 11 O 1.31693 * 120.00198 * 180.02562 * 9 8 7 12 12 C 1.37663 * 120.39083 * 359.78476 * 8 7 6 13 13 C 1.39886 * 119.92000 * 0.47685 * 12 8 7 14 14 C 1.47126 * 120.22410 * 179.78894 * 13 12 8 15 15 O 1.21507 * 119.99980 * 179.44568 * 14 13 12 16 16 O 1.35092 * 120.00628 * 359.71299 * 14 13 12 17 17 C 1.22515 * 117.00564 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99735 * 0.02562 * 17 16 14 19 19 C 1.46574 * 120.00079 * 179.97438 * 17 16 14 20 20 N 1.29383 * 120.00465 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46956 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47066 * 120.00401 * 21 19 17 24 24 H 1.48500 * 109.46805 * 240.00372 * 21 19 17 25 25 H 1.09001 * 109.46934 * 185.96405 * 1 2 3 26 26 H 1.08994 * 109.47567 * 305.95886 * 1 2 3 27 27 H 1.08999 * 109.47709 * 65.96275 * 1 2 3 28 28 H 1.09000 * 109.47625 * 240.00485 * 2 1 3 29 29 H 1.08996 * 109.47436 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47224 * 300.00365 * 3 2 1 31 31 H 1.09008 * 109.47067 * 60.00037 * 3 2 1 32 32 H 1.07996 * 119.96362 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.76719 * 180.02562 * 7 6 5 34 34 H 1.08002 * 120.04403 * 180.22659 * 12 8 7 35 35 H 0.96997 * 120.00423 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1333 -0.8532 1.4778 5 6 1.6769 -2.5086 1.0831 6 6 1.1518 -2.8098 -0.1689 7 6 0.7961 -4.1063 -0.4752 8 6 0.9581 -5.1192 0.4584 9 7 0.5718 -6.5060 0.1139 10 8 0.0754 -6.7749 -1.0759 11 8 0.7236 -7.4706 0.9975 12 6 1.4807 -4.8433 1.7018 13 6 1.8420 -3.5328 2.0317 14 6 2.3968 -3.2296 3.3601 15 8 2.7186 -2.0916 3.6388 16 8 2.5535 -4.2174 4.2683 17 6 3.0198 -3.9034 5.3569 18 1 3.2846 -2.8752 5.5546 19 6 3.2173 -4.9229 6.3912 20 7 2.8996 -6.1547 6.1546 21 14 3.9276 -4.4440 8.0513 22 1 4.2048 -2.9852 8.0688 23 1 2.9524 -4.7750 9.1211 24 1 5.1898 -5.1911 8.2837 25 1 -0.3633 -1.0221 0.1068 26 1 -0.3634 0.6034 0.8318 27 1 -0.3634 0.4186 -0.9385 28 1 1.8933 -0.5137 -0.8900 29 1 3.1298 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6765 1.9564 0.8901 32 1 1.0227 -2.0274 -0.9020 33 1 0.3891 -4.3348 -1.4491 34 1 1.6079 -5.6370 2.4231 35 1 3.0299 -6.8293 6.8393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775085268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:15 Heat of formation + Delta-G solvation = -16.292626 kcal Electronic energy + Delta-G solvation = -23015.655309 eV Core-core repulsion = 19303.741285 eV Total energy + Delta-G solvation = -3711.914024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.32796 -41.12408 -39.42485 -37.71662 -35.91661 -35.60470 -34.77445 -33.09010 -32.87705 -28.38677 -27.97069 -27.73340 -25.38760 -23.85815 -23.15276 -22.01936 -20.42694 -20.19588 -19.21360 -18.75809 -18.32148 -17.26994 -17.09249 -16.99183 -16.79786 -16.61259 -16.16919 -15.93709 -15.02793 -14.90441 -14.61041 -14.32075 -13.97219 -13.93960 -13.32464 -13.20175 -13.10057 -12.62479 -12.61433 -12.52645 -12.35809 -12.31400 -12.18215 -12.13070 -11.93165 -11.92985 -11.62009 -11.39308 -10.96210 -10.61010 -10.23633 -8.88716 -8.75105 -6.03210 -1.92843 -0.67206 -0.18375 -0.05074 0.36118 1.16350 1.28690 1.34452 1.48367 1.54807 2.02829 2.16585 2.47761 2.87314 3.16933 3.32912 3.55700 3.71765 3.81831 3.88255 4.02638 4.23730 4.35904 4.43858 4.51279 4.60334 4.73212 4.74493 4.78287 4.86199 4.95227 4.98926 5.11655 5.25234 5.28791 5.56822 5.62787 6.47754 6.74030 7.91393 8.33178 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.005577 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.345561 B = 5019.132919 C = 7689.946989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C -0.130 4.130 4 S 0.007 5.993 5 C -0.010 4.010 6 C -0.126 4.126 7 C 0.003 3.997 8 C -0.036 4.036 9 N -0.006 5.006 10 O -0.134 6.134 11 O -0.260 6.260 12 C -0.007 4.007 13 C -0.091 4.091 14 C 0.337 3.663 15 O -0.562 6.562 16 O -0.160 6.160 17 C -0.426 4.426 18 H 0.080 0.920 19 C 0.006 3.994 20 N -0.837 5.837 21 Si 1.021 2.979 22 H -0.261 1.261 23 H -0.253 1.253 24 H -0.253 1.253 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.202 0.798 33 H 0.200 0.800 34 H 0.138 0.862 35 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 11.559 -14.191 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.270 4.270 3 C -0.188 4.188 4 S 0.260 5.740 5 C -0.127 4.127 6 C -0.151 4.151 7 C -0.020 4.020 8 C -0.127 4.127 9 N 0.467 4.533 10 O -0.343 6.343 11 O -0.431 6.431 12 C -0.029 4.029 13 C -0.100 4.100 14 C 0.194 3.806 15 O -0.467 6.467 16 O -0.062 6.062 17 C -0.503 4.503 18 H 0.098 0.902 19 C -0.206 4.206 20 N -0.468 5.468 21 Si 0.838 3.162 22 H -0.184 1.184 23 H -0.177 1.177 24 H -0.177 1.177 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.136 0.864 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.217 0.783 34 H 0.156 0.844 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.005 12.781 -12.690 18.260 hybrid contribution -0.288 -1.458 0.144 1.493 sum -3.293 11.323 -12.546 17.218 Atomic orbital electron populations 1.22167 0.91654 1.02907 1.04291 1.24169 1.00911 1.01581 1.00355 1.21580 1.01637 0.91764 1.03824 1.87867 1.68181 0.93859 1.24070 1.22867 0.95208 0.99161 0.95491 1.21625 1.01392 0.97351 0.94773 1.21460 0.91832 0.89378 0.99282 1.20252 1.14576 0.79582 0.98268 1.50571 0.96436 1.04769 1.01491 1.96155 1.43850 1.90946 1.03305 1.96367 1.64914 1.38780 1.43023 1.21051 0.90458 0.96820 0.94587 1.18542 1.06554 0.92521 0.92382 1.20730 0.88807 0.84224 0.86847 1.90485 1.56185 1.21380 1.78679 1.80527 1.63182 1.39891 1.22627 1.20987 1.42394 0.96822 0.90142 0.90216 1.28258 0.95897 0.93235 1.03189 1.68969 1.36862 1.03219 1.37785 0.84531 0.78768 0.79584 0.73316 1.18441 1.17701 1.17706 0.92412 0.92207 0.88486 0.86356 0.91984 0.88113 0.92513 0.78091 0.78279 0.84415 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.57 71.98 0.62 -1.45 16 2 C -0.14 -2.29 2.56 30.59 0.08 -2.21 16 3 C -0.13 -1.76 9.20 71.98 0.66 -1.10 16 4 S 0.01 0.21 18.38 -56.49 -1.04 -0.83 16 5 C -0.01 -0.32 5.94 23.04 0.14 -0.18 16 6 C -0.13 -2.61 7.73 22.39 0.17 -2.43 16 7 C 0.00 0.06 9.56 22.30 0.21 0.27 16 8 C -0.04 -1.16 6.88 36.35 0.25 -0.91 16 9 N -0.01 -0.20 4.98 -46.52 -0.23 -0.44 16 10 O -0.13 -4.30 19.13 3.52 0.07 -4.24 16 11 O -0.26 -11.29 19.13 3.53 0.07 -11.23 16 12 C -0.01 -0.27 9.14 22.53 0.21 -0.06 16 13 C -0.09 -3.74 5.89 -19.98 -0.12 -3.86 16 14 C 0.34 17.58 7.74 70.16 0.54 18.12 16 15 O -0.56 -30.31 12.89 19.79 0.26 -30.06 16 16 O -0.16 -9.40 8.54 81.82 0.70 -8.70 16 17 C -0.43 -25.02 9.62 70.00 0.67 -24.34 16 18 H 0.08 4.82 6.70 -2.91 -0.02 4.80 16 19 C 0.01 0.34 5.69 87.23 0.50 0.84 16 20 N -0.84 -46.07 13.66 23.21 0.32 -45.75 16 21 Si 1.02 40.15 29.64 68.60 2.03 42.19 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 24 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 25 H 0.06 0.86 5.92 -2.39 -0.01 0.85 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.12 1.34 6.55 -2.40 -0.02 1.33 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.20 2.28 4.68 -2.91 -0.01 2.26 16 33 H 0.20 2.72 7.56 -2.91 -0.02 2.70 16 34 H 0.14 6.37 7.11 -2.91 -0.02 6.35 16 35 H 0.30 14.56 8.26 -92.71 -0.77 13.79 16 Total: -1.00 -73.87 323.66 7.25 -66.61 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.15 Total: 9.74 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 3.93 Total: -17.31 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.09 Total: -46.19 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: 1.09 Total: -54.22 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.04 Total: -0.83 kcal Total: -73.87 7.25 -66.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775085268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.322 kcal (2) G-P(sol) polarization free energy of solvation -73.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds