Wall clock time and date at job start Fri Apr 10 2020 22:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34517 * 125.78548 * 2 1 4 4 C 1.41387 * 106.83686 * 180.02562 * 3 2 1 5 5 S 1.76202 * 126.57649 * 179.97438 * 4 3 2 6 6 O 1.42098 * 106.40392 * 1.86796 * 5 4 3 7 7 O 1.42097 * 106.40367 * 228.94620 * 5 4 3 8 8 N 1.65602 * 107.21686 * 115.40701 * 5 4 3 9 9 C 1.40572 * 120.00196 * 297.29564 * 8 5 4 10 10 C 1.40652 * 126.07420 * 314.58442 * 9 8 5 11 11 N 1.30942 * 108.40157 * 179.71304 * 10 9 8 12 12 N 1.40071 * 108.39641 * 0.44656 * 11 10 9 13 13 C 1.37316 * 126.07665 * 179.81029 * 12 11 10 14 14 H 1.07990 * 120.00065 * 179.68539 * 13 12 11 15 15 C 1.38977 * 119.99451 * 359.42036 * 13 12 11 16 16 N 1.31299 * 120.00705 * 0.27094 * 15 13 12 17 17 Si 1.86809 * 119.99564 * 180.27436 * 15 13 12 18 18 H 1.48500 * 109.47148 * 59.99457 * 17 15 13 19 19 H 1.48501 * 109.47078 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46716 * 299.99750 * 17 15 13 21 21 C 1.35643 * 126.07457 * 134.58637 * 9 8 5 22 22 C 1.34513 * 106.84333 * 0.22673 * 4 3 2 23 23 C 1.50697 * 125.78865 * 179.77461 * 22 4 3 24 24 O 1.34300 * 125.79255 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47067 * 89.99952 * 1 2 3 26 26 H 1.09001 * 109.46815 * 209.99679 * 1 2 3 27 27 H 1.08995 * 109.47387 * 329.99426 * 1 2 3 28 28 H 1.07994 * 126.58331 * 359.97438 * 3 2 1 29 29 H 0.97005 * 120.00002 * 117.30113 * 8 5 4 30 30 H 1.08001 * 125.79978 * 359.97438 * 10 9 8 31 31 H 0.97000 * 120.00409 * 180.02562 * 16 15 13 32 32 H 1.08002 * 126.24632 * 0.03385 * 21 9 8 33 33 H 1.09003 * 109.47314 * 84.70063 * 23 22 4 34 34 H 1.08999 * 109.46763 * 204.70017 * 23 22 4 35 35 H 1.08995 * 109.47318 * 324.70136 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 16 5.0834 1.6295 -0.0015 6 8 4.6431 2.9798 0.0429 7 8 5.9204 1.1184 -1.0298 8 7 5.8724 1.3477 1.4270 9 6 5.2550 1.6735 2.6471 10 6 4.5748 2.8698 2.9377 11 7 4.1322 2.8052 4.1683 12 7 4.5194 1.5744 4.7134 13 6 4.2487 1.1320 5.9848 14 1 4.5921 0.1587 6.3024 15 6 3.5374 1.9392 6.8646 16 7 3.1198 3.1226 6.4784 17 14 3.1757 1.3405 8.5968 18 1 4.4533 1.0756 9.3058 19 1 2.4096 2.3801 9.3299 20 1 2.3772 0.0902 8.5316 21 6 5.2093 0.8899 3.7534 22 6 3.5814 -0.7121 -0.0060 23 6 4.7706 -1.6377 -0.0135 24 8 2.2924 -1.0894 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.9665 2.1204 -0.0004 29 1 6.7606 0.9579 1.4218 30 1 4.4370 3.6990 2.2595 31 1 2.6237 3.6861 7.0926 32 1 5.6402 -0.0950 3.8566 33 1 5.1188 -1.7902 1.0082 34 1 4.4826 -2.5958 -0.4460 35 1 5.5707 -1.1965 -0.6078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776275280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:19 Heat of formation + Delta-G solvation = 17.363116 kcal Electronic energy + Delta-G solvation = -23854.226018 eV Core-core repulsion = 20176.064168 eV Total energy + Delta-G solvation = -3678.161850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.59159 -39.56736 -36.79001 -35.43097 -34.55441 -33.33139 -33.10709 -32.93818 -30.30474 -29.60384 -27.43070 -24.84534 -24.82791 -22.36781 -20.87044 -20.72307 -19.99314 -18.83853 -17.61316 -16.97253 -16.84262 -16.28543 -15.72564 -15.48316 -15.36964 -14.62935 -13.94627 -13.72700 -13.60453 -13.45860 -13.34798 -13.07419 -12.85258 -12.72880 -12.44105 -12.12527 -11.90548 -11.78118 -11.70784 -11.64851 -11.48716 -11.24776 -10.97384 -10.87913 -10.61488 -10.18262 -10.08356 -9.38445 -8.83771 -8.31142 -8.19098 -7.06647 -6.63835 -4.34493 0.85487 1.53156 2.33557 2.81570 2.91535 3.00202 3.04174 3.46991 3.48402 3.79547 4.08248 4.14260 4.52969 4.60226 4.68130 4.94007 5.07231 5.17147 5.27551 5.35213 5.40610 5.46930 5.71405 5.74299 5.88927 6.09867 6.16186 6.27568 6.41975 6.51617 6.82970 7.01886 7.09150 7.27746 7.57355 7.77186 8.13960 8.59408 9.26616 9.52693 10.31745 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.004870 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.063063 B = 5747.537251 C = 6471.138207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.030 4.030 3 C -0.122 4.122 4 C -0.742 4.742 5 S 2.715 3.285 6 O -0.953 6.953 7 O -0.980 6.980 8 N -1.012 6.012 9 C -0.062 4.062 10 C -0.038 4.038 11 N -0.252 5.252 12 N -0.141 5.141 13 C -0.324 4.324 14 H 0.117 0.883 15 C 0.048 3.952 16 N -0.768 5.768 17 Si 0.934 3.066 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.267 1.267 21 C -0.061 4.061 22 C 0.121 3.879 23 C -0.109 4.109 24 O -0.170 6.170 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.161 0.839 29 H 0.410 0.590 30 H 0.169 0.831 31 H 0.277 0.723 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -8.434 -8.920 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.829 4.829 5 S 2.803 3.197 6 O -0.943 6.943 7 O -0.970 6.970 8 N -0.766 5.766 9 C -0.171 4.171 10 C -0.217 4.217 11 N -0.082 5.082 12 N 0.092 4.908 13 C -0.456 4.456 14 H 0.135 0.865 15 C -0.170 4.170 16 N -0.395 5.395 17 Si 0.758 3.242 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.192 1.192 21 C -0.214 4.214 22 C 0.066 3.934 23 C -0.165 4.165 24 O -0.065 6.065 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.179 0.821 29 H 0.245 0.755 30 H 0.186 0.814 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.853 -7.288 -8.614 11.435 hybrid contribution 0.195 -1.234 0.490 1.342 sum -1.658 -8.523 -8.124 11.891 Atomic orbital electron populations 1.20286 0.84662 1.04364 1.03259 1.22473 0.93984 0.83612 1.07847 1.21105 0.89450 1.00085 1.03543 1.31822 1.19289 1.07016 1.24753 1.01556 0.72305 0.74002 0.71861 1.93532 1.82328 1.32411 1.86030 1.93521 1.66521 1.81619 1.55351 1.52086 1.26192 1.79278 1.19064 1.16706 1.15768 0.96884 0.87698 1.24069 1.04296 0.97314 0.95973 1.78277 1.22877 1.00015 1.07027 1.44631 1.28336 1.09649 1.08147 1.19859 1.37064 1.03607 0.85091 0.86540 1.25643 0.95564 0.95045 1.00755 1.70190 1.26710 1.07037 1.35525 0.85897 0.79231 0.78927 0.80139 1.19081 1.20060 1.19151 1.21645 1.08975 0.99481 0.91305 1.22171 0.83897 0.92688 0.94601 1.20873 0.91625 0.98619 1.05370 1.83911 1.16272 1.35890 1.70437 0.90252 0.90591 0.88996 0.82142 0.75488 0.81374 0.91266 0.83549 0.88117 0.89248 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.42 36.01 0.38 -0.37 16 2 C -0.03 -0.46 7.32 -35.62 -0.26 -0.72 16 3 C -0.12 -2.08 10.53 -39.70 -0.42 -2.50 16 4 C -0.74 -12.88 6.10 -39.70 -0.24 -13.13 16 5 S 2.71 48.06 5.52 -107.50 -0.59 47.47 16 6 O -0.95 -19.60 15.75 -57.17 -0.90 -20.50 16 7 O -0.98 -17.39 16.64 -57.17 -0.95 -18.34 16 8 N -1.01 -17.46 5.93 32.32 0.19 -17.27 16 9 C -0.06 -1.33 6.53 -83.86 -0.55 -1.88 16 10 C -0.04 -0.95 11.21 -17.02 -0.19 -1.14 16 11 N -0.25 -6.97 10.40 30.81 0.32 -6.65 16 12 N -0.14 -3.69 3.74 -11.40 -0.04 -3.73 16 13 C -0.32 -8.23 10.25 -14.82 -0.15 -8.38 16 14 H 0.12 2.63 7.83 -52.49 -0.41 2.22 16 15 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 16 N -0.77 -20.70 11.81 55.49 0.66 -20.04 16 17 Si 0.93 18.29 29.55 -169.99 -5.02 13.27 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 21 C -0.06 -1.36 11.50 -16.36 -0.19 -1.55 16 22 C 0.12 1.88 7.32 -35.63 -0.26 1.62 16 23 C -0.11 -1.23 10.15 36.00 0.37 -0.87 16 24 O -0.17 -2.68 10.65 5.71 0.06 -2.62 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.16 2.58 8.06 -52.49 -0.42 2.16 16 29 H 0.41 5.68 8.96 -34.47 -0.31 5.38 16 30 H 0.17 4.00 6.86 -52.49 -0.36 3.64 16 31 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.15 2.74 8.06 -52.49 -0.42 2.31 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.11 1.21 6.69 -51.93 -0.35 0.86 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -34.04 323.60 -6.54 -40.58 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -3.52 Total: 10.77 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -1.62 Total: -27.82 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 1.13 Total: -47.69 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -1.79 Total: -41.46 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Atomic # 16 Polarization: 48.06 SS G_CDS: -0.59 Total: 47.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.04 -6.54 -40.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776275280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.945 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds