Wall clock time and date at job start Fri Apr 10 2020 22:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34517 * 125.78548 * 2 1 4 4 C 1.41387 * 106.83686 * 180.02562 * 3 2 1 5 5 S 1.76202 * 126.57649 * 179.97438 * 4 3 2 6 6 O 1.42098 * 106.40392 * 1.86796 * 5 4 3 7 7 O 1.42097 * 106.40367 * 228.94620 * 5 4 3 8 8 N 1.65602 * 107.21686 * 115.40701 * 5 4 3 9 9 C 1.40572 * 120.00196 * 297.29564 * 8 5 4 10 10 C 1.40652 * 126.07420 * 314.58442 * 9 8 5 11 11 N 1.30942 * 108.40157 * 179.71304 * 10 9 8 12 12 N 1.40071 * 108.39641 * 0.44656 * 11 10 9 13 13 C 1.37316 * 126.07665 * 179.81029 * 12 11 10 14 14 H 1.07990 * 120.00065 * 179.68539 * 13 12 11 15 15 C 1.38977 * 119.99451 * 359.42036 * 13 12 11 16 16 N 1.31299 * 120.00705 * 0.27094 * 15 13 12 17 17 Si 1.86809 * 119.99564 * 180.27436 * 15 13 12 18 18 H 1.48500 * 109.47148 * 59.99457 * 17 15 13 19 19 H 1.48501 * 109.47078 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46716 * 299.99750 * 17 15 13 21 21 C 1.35643 * 126.07457 * 134.58637 * 9 8 5 22 22 C 1.34513 * 106.84333 * 0.22673 * 4 3 2 23 23 C 1.50697 * 125.78865 * 179.77461 * 22 4 3 24 24 O 1.34300 * 125.79255 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47067 * 89.99952 * 1 2 3 26 26 H 1.09001 * 109.46815 * 209.99679 * 1 2 3 27 27 H 1.08995 * 109.47387 * 329.99426 * 1 2 3 28 28 H 1.07994 * 126.58331 * 359.97438 * 3 2 1 29 29 H 0.97005 * 120.00002 * 117.30113 * 8 5 4 30 30 H 1.08001 * 125.79978 * 359.97438 * 10 9 8 31 31 H 0.97000 * 120.00409 * 180.02562 * 16 15 13 32 32 H 1.08002 * 126.24632 * 0.03385 * 21 9 8 33 33 H 1.09003 * 109.47314 * 84.70063 * 23 22 4 34 34 H 1.08999 * 109.46763 * 204.70017 * 23 22 4 35 35 H 1.08995 * 109.47318 * 324.70136 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 16 5.0834 1.6295 -0.0015 6 8 4.6431 2.9798 0.0429 7 8 5.9204 1.1184 -1.0298 8 7 5.8724 1.3477 1.4270 9 6 5.2550 1.6735 2.6471 10 6 4.5748 2.8698 2.9377 11 7 4.1322 2.8052 4.1683 12 7 4.5194 1.5744 4.7134 13 6 4.2487 1.1320 5.9848 14 1 4.5921 0.1587 6.3024 15 6 3.5374 1.9392 6.8646 16 7 3.1198 3.1226 6.4784 17 14 3.1757 1.3405 8.5968 18 1 4.4533 1.0756 9.3058 19 1 2.4096 2.3801 9.3299 20 1 2.3772 0.0902 8.5316 21 6 5.2093 0.8899 3.7534 22 6 3.5814 -0.7121 -0.0060 23 6 4.7706 -1.6377 -0.0135 24 8 2.2924 -1.0894 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.9665 2.1204 -0.0004 29 1 6.7606 0.9579 1.4218 30 1 4.4370 3.6990 2.2595 31 1 2.6237 3.6861 7.0926 32 1 5.6402 -0.0950 3.8566 33 1 5.1188 -1.7902 1.0082 34 1 4.4826 -2.5958 -0.4460 35 1 5.5707 -1.1965 -0.6078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776275280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:18 Heat of formation + Delta-G solvation = -7.423413 kcal Electronic energy + Delta-G solvation = -23855.300843 eV Core-core repulsion = 20176.064168 eV Total energy + Delta-G solvation = -3679.236674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.79285 -41.42277 -38.28966 -36.95116 -36.23033 -34.83679 -34.53191 -34.03817 -32.20259 -30.53744 -29.22756 -26.68714 -25.91006 -23.61279 -22.64402 -22.06668 -21.70163 -20.44331 -19.25065 -18.47357 -18.07199 -17.51275 -17.45745 -17.16819 -16.66827 -16.14338 -15.58247 -15.23851 -14.90795 -14.87351 -14.61401 -14.28139 -13.89741 -13.78609 -13.60961 -13.50557 -13.43485 -13.33797 -13.22155 -13.03760 -12.84506 -12.78551 -12.68754 -12.33111 -12.13716 -11.75135 -11.44438 -11.16661 -10.67840 -10.12005 -9.47836 -8.85303 -8.46305 -6.26768 -0.58184 0.32836 1.07473 1.31935 1.41388 1.56848 1.69952 1.77180 2.00361 2.20319 2.22747 2.69412 2.90441 3.09591 3.31916 3.49420 3.90035 4.08195 4.30313 4.33675 4.50442 4.54068 4.57439 4.62842 4.64535 4.73913 4.79510 4.90310 4.99434 5.14975 5.27658 5.33823 5.45418 5.82558 5.93192 6.11923 6.37339 6.76433 7.44290 7.63507 8.52288 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.004870 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.063063 B = 5747.537251 C = 6471.138207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.026 4.026 3 C -0.162 4.162 4 C -0.771 4.771 5 S 2.736 3.264 6 O -0.987 6.987 7 O -0.977 6.977 8 N -1.003 6.003 9 C -0.041 4.041 10 C -0.060 4.060 11 N -0.300 5.300 12 N -0.166 5.166 13 C -0.354 4.354 14 H 0.141 0.859 15 C -0.003 4.003 16 N -0.822 5.822 17 Si 1.015 2.985 18 H -0.254 1.254 19 H -0.279 1.279 20 H -0.255 1.255 21 C -0.056 4.056 22 C 0.126 3.874 23 C -0.115 4.115 24 O -0.173 6.173 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.156 0.844 29 H 0.428 0.572 30 H 0.166 0.834 31 H 0.277 0.723 32 H 0.187 0.813 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 -11.341 -8.806 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C -0.181 4.181 4 C -0.860 4.860 5 S 2.826 3.174 6 O -0.977 6.977 7 O -0.967 6.967 8 N -0.759 5.759 9 C -0.150 4.150 10 C -0.238 4.238 11 N -0.130 5.130 12 N 0.066 4.934 13 C -0.485 4.485 14 H 0.158 0.842 15 C -0.215 4.215 16 N -0.450 5.450 17 Si 0.834 3.166 18 H -0.178 1.178 19 H -0.203 1.203 20 H -0.179 1.179 21 C -0.208 4.208 22 C 0.071 3.929 23 C -0.171 4.171 24 O -0.068 6.068 25 H 0.123 0.877 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.174 0.826 29 H 0.267 0.733 30 H 0.183 0.817 31 H 0.087 0.913 32 H 0.204 0.796 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.478 -10.205 -8.516 13.374 hybrid contribution 0.136 -0.388 0.245 0.478 sum -1.343 -10.593 -8.272 13.507 Atomic orbital electron populations 1.20513 0.81665 1.05277 1.05209 1.23196 0.95693 0.82898 1.05755 1.21298 0.90147 1.00731 1.05969 1.31684 1.18875 1.08067 1.27349 1.00570 0.72158 0.73173 0.71502 1.93494 1.82919 1.34852 1.86428 1.93520 1.66753 1.81502 1.54952 1.51900 1.27337 1.79250 1.17409 1.16615 1.14182 0.95390 0.88800 1.24191 1.05344 0.98619 0.95608 1.78185 1.24603 1.01882 1.08361 1.44885 1.29680 1.09698 1.09136 1.20567 1.37805 1.04866 0.85301 0.84175 1.26800 0.94681 0.94791 1.05199 1.70364 1.28410 1.08858 1.37322 0.84714 0.79393 0.78400 0.74120 1.17778 1.20347 1.17881 1.22350 1.07441 1.00592 0.90432 1.22930 0.84808 0.92724 0.92402 1.21172 0.89915 0.99152 1.06824 1.83946 1.16513 1.36001 1.70341 0.87689 0.89199 0.88500 0.82627 0.73337 0.81714 0.91316 0.79557 0.86326 0.86340 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.42 71.24 0.74 -0.64 16 2 C -0.03 -0.77 7.32 24.83 0.18 -0.59 16 3 C -0.16 -5.56 10.53 22.19 0.23 -5.33 16 4 C -0.77 -26.30 6.10 22.19 0.14 -26.16 16 5 S 2.74 95.30 5.52 -56.49 -0.31 94.99 16 6 O -0.99 -41.44 15.75 -128.00 -2.02 -43.45 16 7 O -0.98 -33.20 16.64 -128.00 -2.13 -35.33 16 8 N -1.00 -33.18 5.93 -51.65 -0.31 -33.48 16 9 C -0.04 -1.75 6.53 37.73 0.25 -1.50 16 10 C -0.06 -3.04 11.21 85.41 0.96 -2.08 16 11 N -0.30 -17.10 10.40 -56.45 -0.59 -17.69 16 12 N -0.17 -8.73 3.74 -189.98 -0.71 -9.44 16 13 C -0.35 -17.92 10.25 84.01 0.86 -17.06 16 14 H 0.14 6.11 7.83 -2.92 -0.02 6.09 16 15 C 0.00 -0.13 5.50 84.95 0.47 0.34 16 16 N -0.82 -45.71 11.81 21.66 0.26 -45.45 16 17 Si 1.01 37.13 29.55 68.60 2.03 39.16 16 18 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 19 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 21 C -0.06 -2.41 11.50 83.35 0.96 -1.45 16 22 C 0.13 3.68 7.32 24.83 0.18 3.86 16 23 C -0.12 -2.23 10.15 71.23 0.72 -1.50 16 24 O -0.17 -5.13 10.65 -2.48 -0.03 -5.15 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.16 5.28 8.06 -2.91 -0.02 5.26 16 29 H 0.43 10.85 8.96 -96.74 -0.87 9.98 16 30 H 0.17 8.24 6.86 -2.91 -0.02 8.22 16 31 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.19 6.33 8.06 -2.91 -0.02 6.31 16 33 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 2.14 6.69 -2.39 -0.02 2.12 16 Total: -1.00 -75.86 323.60 2.16 -73.70 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.28 Total: 34.29 kcal Atomic # 6 Polarization: -57.80 SS G_CDS: 5.69 Total: -52.11 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -1.35 Total: -106.07 kcal Atomic # 8 Polarization: -79.77 SS G_CDS: -4.17 Total: -83.94 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 95.30 SS G_CDS: -0.31 Total: 94.99 kcal Total: -75.86 2.16 -73.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776275280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.273 kcal (2) G-P(sol) polarization free energy of solvation -75.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds