Wall clock time and date at job start Fri Apr 10 2020 22:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76197 * 103.00192 * 2 1 4 4 C 1.39090 * 120.00621 * 359.97438 * 3 2 1 5 5 C 1.38192 * 120.22669 * 180.02562 * 4 3 2 6 6 C 1.38032 * 120.23687 * 0.02562 * 5 4 3 7 7 C 1.39631 * 120.01284 * 359.97438 * 6 5 4 8 8 C 1.47746 * 120.11375 * 179.97438 * 7 6 5 9 9 O 1.21473 * 120.00022 * 180.02562 * 8 7 6 10 10 O 1.34705 * 119.99816 * 0.28187 * 8 7 6 11 11 C 1.45201 * 116.99951 * 179.72553 * 10 8 7 12 12 H 1.08997 * 109.47377 * 29.99758 * 11 10 8 13 13 C 1.53002 * 109.46984 * 269.99478 * 11 10 8 14 14 C 1.50701 * 109.47301 * 149.99985 * 11 10 8 15 15 H 1.08006 * 119.99747 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00069 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00282 * 359.97438 * 16 14 11 18 18 Si 1.86809 * 119.99944 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.46742 * 89.99896 * 18 16 14 20 20 H 1.48496 * 109.46940 * 209.99595 * 18 16 14 21 21 H 1.48498 * 109.47034 * 329.99955 * 18 16 14 22 22 C 1.38697 * 120.01003 * 180.25869 * 3 2 1 23 23 N 1.48023 * 120.11707 * 0.02562 * 22 3 2 24 24 O 1.21798 * 119.99983 * 270.22896 * 23 22 3 25 25 O 1.21803 * 119.99932 * 90.23311 * 23 22 3 26 26 H 1.08998 * 109.46720 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46762 * 299.99922 * 1 2 3 28 28 H 1.09000 * 109.46807 * 59.99943 * 1 2 3 29 29 H 1.08001 * 119.89054 * 0.03282 * 4 3 2 30 30 H 1.08002 * 119.88148 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.99058 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.47253 * 180.02562 * 13 11 10 33 33 H 1.08997 * 109.47292 * 300.00332 * 13 11 10 34 34 H 1.09000 * 109.46742 * 59.99855 * 13 11 10 35 35 H 0.96999 * 120.00186 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1933 2.6655 -0.0005 5 6 1.4990 4.0132 -0.0011 6 6 2.8158 4.4273 -0.0016 7 6 3.8447 3.4833 -0.0011 8 6 5.2549 3.9240 -0.0022 9 8 6.1484 3.1011 -0.0022 10 8 5.5498 5.2384 0.0020 11 6 6.9564 5.5984 0.0067 12 1 7.5305 4.8277 -0.5075 13 6 7.4465 5.7213 1.4509 14 6 7.1400 6.9168 -0.6998 15 1 6.2850 7.4324 -1.1117 16 6 8.3994 7.4648 -0.8205 17 7 9.4405 6.8373 -0.3185 18 14 8.6270 9.0988 -1.6969 19 1 8.5095 10.2072 -0.7158 20 1 9.9698 9.1382 -2.3298 21 1 7.5826 9.2497 -2.7417 22 6 3.5367 2.1225 -0.0054 23 7 4.6214 1.1154 -0.0118 24 8 5.0696 0.6964 1.0404 25 8 5.0659 0.7057 -1.0692 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.1610 2.3479 -0.0004 30 1 0.7048 4.7451 -0.0019 31 1 3.0502 5.4815 -0.0024 32 1 8.5024 5.9920 1.4545 33 1 6.8724 6.4921 1.9651 34 1 7.3137 4.7677 1.9620 35 1 10.3265 7.2230 -0.4031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777316677.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:20 Heat of formation + Delta-G solvation = -53.106833 kcal Electronic energy + Delta-G solvation = -23384.371174 eV Core-core repulsion = 19670.860766 eV Total energy + Delta-G solvation = -3713.510407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.96224 -40.12162 -38.92025 -36.12172 -36.01353 -33.44144 -32.42081 -32.20229 -29.83023 -29.38124 -26.67801 -25.41345 -24.66266 -23.09179 -21.76866 -20.31836 -19.23160 -18.45006 -18.28623 -17.41164 -16.78171 -16.63645 -16.02943 -15.59631 -15.40811 -15.19290 -14.64794 -14.58375 -14.45600 -13.56378 -13.49965 -13.11418 -12.91224 -12.36793 -12.28777 -12.04554 -11.36280 -11.30159 -11.17352 -11.10582 -10.92803 -10.71708 -10.69480 -10.50284 -10.45746 -10.37403 -10.12714 -9.86187 -9.71461 -9.03609 -8.57417 -8.08695 -6.25356 -4.33942 0.04708 0.31573 0.69979 0.85918 1.47024 1.71629 2.42141 3.01802 3.20385 3.25830 3.27037 3.31465 4.13158 4.23839 4.28403 4.45572 4.46641 4.55325 4.60851 4.68786 5.03758 5.07654 5.12160 5.39050 5.58013 5.70640 5.97115 6.49300 6.56596 6.76667 6.80981 6.93959 7.44992 7.61028 7.75916 7.88564 8.01181 8.29940 8.72905 9.31529 10.82064 Molecular weight = 311.07amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.003625 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.038978 B = 7721.338888 C = 8393.146414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.083 6.083 3 C -0.063 4.063 4 C -0.105 4.105 5 C -0.076 4.076 6 C -0.057 4.057 7 C -0.047 4.047 8 C 0.486 3.514 9 O -0.494 6.494 10 O -0.341 6.341 11 C 0.216 3.784 12 H 0.051 0.949 13 C -0.156 4.156 14 C -0.525 4.525 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.915 3.085 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.036 3.964 23 N 0.032 4.968 24 O -0.126 6.126 25 O -0.125 6.125 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.167 0.833 32 H 0.103 0.897 33 H 0.038 0.962 34 H 0.018 0.982 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.751 -8.066 1.394 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.161 5.839 3 C -0.177 4.177 4 C -0.129 4.129 5 C -0.095 4.095 6 C -0.079 4.079 7 C -0.051 4.051 8 C 0.328 3.672 9 O -0.384 6.384 10 O -0.256 6.256 11 C 0.165 3.835 12 H 0.069 0.931 13 C -0.214 4.214 14 C -0.563 4.563 15 H 0.088 0.912 16 C -0.139 4.139 17 N -0.523 5.523 18 Si 0.741 3.259 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.196 1.196 22 C -0.052 4.052 23 N 0.564 4.436 24 O -0.350 6.350 25 O -0.350 6.350 26 H 0.136 0.864 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.166 0.834 30 H 0.171 0.829 31 H 0.185 0.815 32 H 0.121 0.879 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.166 -8.805 1.417 22.968 hybrid contribution -0.221 1.660 -0.372 1.716 sum -21.388 -7.144 1.045 22.574 Atomic orbital electron populations 1.23811 0.93517 1.08085 1.06234 1.86232 1.07626 0.98860 1.91155 1.21322 0.92727 0.99975 1.03690 1.21363 0.98155 0.92708 1.00706 1.21407 0.96971 0.95473 0.95690 1.21717 0.90802 1.00979 0.94363 1.19203 0.94188 0.89839 1.01840 1.20688 0.87693 0.84061 0.74793 1.90924 1.48263 1.54308 1.44913 1.86522 1.36725 1.21240 1.81147 1.20842 0.70678 0.96819 0.95197 0.93143 1.22187 1.05083 0.97900 0.96203 1.20962 0.94080 1.04150 1.37140 0.91182 1.24898 0.95179 0.98342 0.95470 1.69895 0.99293 1.38759 1.44355 0.86226 0.77727 0.82334 0.79572 1.20287 1.20848 1.19589 1.20364 0.86564 0.88223 1.10049 1.43000 1.00087 0.99712 1.00778 1.94539 1.60179 1.59261 1.21061 1.94548 1.60373 1.59746 1.20292 0.86445 0.89021 0.89010 0.83397 0.82942 0.81522 0.87876 0.94258 0.96316 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.15 101.05 0.92 0.20 16 2 S -0.08 -0.90 21.97 -107.50 -2.36 -3.26 16 3 C -0.06 -0.79 6.11 -39.10 -0.24 -1.02 16 4 C -0.10 -0.89 9.36 -39.28 -0.37 -1.26 16 5 C -0.08 -0.63 10.02 -39.67 -0.40 -1.02 16 6 C -0.06 -0.70 9.61 -39.14 -0.38 -1.08 16 7 C -0.05 -0.80 5.87 -105.01 -0.62 -1.42 16 8 C 0.49 10.75 7.87 34.62 0.27 11.02 16 9 O -0.49 -12.60 13.70 -25.86 -0.35 -12.96 16 10 O -0.34 -7.97 9.11 -40.51 -0.37 -8.34 16 11 C 0.22 5.81 2.56 -27.88 -0.07 5.73 16 12 H 0.05 1.51 7.16 -51.93 -0.37 1.14 16 13 C -0.16 -3.97 9.33 37.16 0.35 -3.63 16 14 C -0.53 -14.51 8.90 -34.44 -0.31 -14.81 16 15 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 18 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 C 0.04 0.60 6.16 -79.29 -0.49 0.11 16 23 N 0.03 0.64 1.82 34.28 0.06 0.70 16 24 O -0.13 -2.63 18.92 -33.26 -0.63 -3.26 16 25 O -0.13 -2.63 18.93 -33.21 -0.63 -3.26 16 26 H 0.12 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.09 0.33 7.74 -51.92 -0.40 -0.08 16 28 H 0.09 0.33 7.74 -51.92 -0.40 -0.07 16 29 H 0.15 0.68 5.86 -52.49 -0.31 0.38 16 30 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 31 H 0.17 1.89 7.60 -52.49 -0.40 1.49 16 32 H 0.10 2.80 6.07 -51.93 -0.32 2.48 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -34.13 327.65 -8.58 -42.72 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -3.43 Total: -3.02 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.41 Total: -5.53 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.69 Total: -23.77 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -1.98 Total: -27.81 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.36 Total: -3.26 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.13 -8.58 -42.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777316677.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.389 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds