Wall clock time and date at job start Fri Apr 10 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38089 * 120.09019 * 2 1 4 4 Cl 1.73606 * 119.93157 * 359.70535 * 3 2 1 5 5 C 1.38448 * 120.12755 * 179.97438 * 3 2 1 6 6 C 1.38367 * 120.29046 * 0.02562 * 5 3 2 7 7 C 1.37935 * 120.16699 * 359.97438 * 6 5 3 8 8 C 1.39593 * 120.08139 * 179.97438 * 2 1 3 9 9 C 1.47735 * 120.14441 * 0.04597 * 8 2 1 10 10 O 1.21471 * 119.99441 * 6.17019 * 9 8 2 11 11 O 1.34705 * 120.00354 * 186.17885 * 9 8 2 12 12 C 1.45199 * 117.00333 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47245 * 179.97438 * 12 11 9 14 14 O 1.21282 * 120.00024 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99715 * 179.97438 * 13 12 11 16 16 C 1.46503 * 119.99962 * 179.97438 * 15 13 12 17 17 C 1.50691 * 109.47471 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99880 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00269 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00293 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00200 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47104 * 89.99644 * 21 19 17 23 23 H 1.48497 * 109.47218 * 210.00005 * 21 19 17 24 24 H 1.48495 * 109.46707 * 329.99648 * 21 19 17 25 25 H 1.09002 * 109.47245 * 96.54254 * 1 2 3 26 26 H 1.08995 * 109.47484 * 216.55169 * 1 2 3 27 27 H 1.09002 * 109.46784 * 336.54791 * 1 2 3 28 28 H 1.08001 * 119.85923 * 180.02562 * 5 3 2 29 29 H 1.08001 * 119.92410 * 180.02562 * 6 5 3 30 30 H 1.07994 * 120.06644 * 179.97438 * 7 6 5 31 31 H 1.09006 * 109.46705 * 299.99739 * 12 11 9 32 32 H 1.09002 * 109.47419 * 59.99267 * 12 11 9 33 33 H 0.97001 * 120.00346 * 0.02562 * 15 13 12 34 34 H 1.08999 * 109.47498 * 300.00646 * 16 15 13 35 35 H 1.09002 * 109.46911 * 59.99937 * 16 15 13 36 36 H 0.96998 * 120.00906 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1948 0.0000 4 17 1.3319 2.6986 -0.0077 5 6 3.5838 1.1957 0.0005 6 6 4.2825 0.0014 0.0005 7 6 3.6031 -1.1991 0.0005 8 6 2.2067 -1.2079 0.0005 9 6 1.4730 -2.4902 0.0001 10 8 0.2637 -2.4979 -0.1138 11 8 2.1451 -3.6508 0.1262 12 6 1.3595 -4.8719 0.1169 13 6 2.2751 -6.0595 0.2669 14 8 3.4720 -5.8931 0.3709 15 7 1.7639 -7.3064 0.2856 16 6 2.6540 -8.4609 0.4309 17 6 1.8387 -9.7282 0.4214 18 1 0.7649 -9.6786 0.3171 19 6 2.4635 -10.9509 0.5458 20 7 3.7712 -11.0113 0.6723 21 14 1.4528 -12.5218 0.5348 22 1 1.3160 -13.0127 -0.8600 23 1 2.1326 -13.5537 1.3583 24 1 0.1061 -12.2478 1.0974 25 1 -0.3634 -0.1171 -1.0210 26 1 -0.3634 -0.8255 0.6120 27 1 -0.3633 0.9428 0.4090 28 1 4.1209 2.1327 0.0010 29 1 5.3624 0.0090 0.0014 30 1 4.1501 -2.1303 0.0001 31 1 0.6495 -4.8534 0.9438 32 1 0.8175 -4.9482 -0.8257 33 1 0.8067 -7.4395 0.2021 34 1 3.3632 -8.4794 -0.3966 35 1 3.1970 -8.3847 1.3730 36 1 4.2108 -11.8714 0.7602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787087935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:31 Heat of formation + Delta-G solvation = -125.316626 kcal Electronic energy + Delta-G solvation = -21989.968594 eV Core-core repulsion = 18271.283229 eV Total energy + Delta-G solvation = -3718.685365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.99446 -40.65359 -39.89979 -37.67459 -37.48218 -36.18658 -34.41962 -33.82380 -32.51172 -30.72590 -28.71055 -28.05102 -25.38290 -24.50594 -23.02389 -21.99771 -21.65013 -19.45638 -19.02868 -18.15075 -17.88472 -17.43995 -17.05937 -16.76604 -16.62308 -16.28254 -16.16119 -15.70352 -15.22746 -14.72962 -14.43266 -14.40037 -14.09648 -13.82495 -13.71424 -13.43460 -13.39775 -13.06280 -12.93953 -12.72008 -12.65846 -12.55531 -12.23265 -11.93455 -11.77949 -11.50164 -11.34167 -10.91274 -10.81831 -10.15331 -9.93211 -9.77775 -8.29661 -6.46116 -0.53753 0.03558 0.89564 1.26703 1.30086 1.44899 1.46244 1.54921 1.57710 2.33157 2.49194 2.54678 3.05630 3.44477 3.60270 3.68700 3.84505 3.86588 4.03096 4.05036 4.18291 4.40399 4.57508 4.63248 4.68915 4.97898 5.06272 5.07800 5.12703 5.20314 5.22071 5.37077 5.41755 5.59271 5.62841 5.82132 6.48591 6.62901 6.77566 7.20276 7.35261 8.82347 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.041580 B = 0.002172 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.245974 B =12888.434485 C =13529.177015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.019 4.019 3 C -0.063 4.063 4 Cl -0.052 7.052 5 C -0.060 4.060 6 C -0.119 4.119 7 C -0.057 4.057 8 C -0.138 4.138 9 C 0.509 3.491 10 O -0.510 6.510 11 O -0.341 6.341 12 C 0.062 3.938 13 C 0.500 3.500 14 O -0.582 6.582 15 N -0.699 5.699 16 C 0.267 3.733 17 C -0.557 4.557 18 H 0.086 0.914 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.984 3.016 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.256 1.256 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.170 0.830 29 H 0.172 0.828 30 H 0.143 0.857 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.413 0.587 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 26.775 -1.891 27.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.020 4.020 3 C -0.090 4.090 4 Cl -0.023 7.023 5 C -0.078 4.078 6 C -0.137 4.137 7 C -0.076 4.076 8 C -0.139 4.139 9 C 0.356 3.644 10 O -0.400 6.400 11 O -0.257 6.257 12 C -0.015 4.015 13 C 0.286 3.714 14 O -0.463 6.463 15 N -0.350 5.350 16 C 0.144 3.856 17 C -0.594 4.594 18 H 0.104 0.896 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.808 3.192 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.179 1.179 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.187 0.813 29 H 0.190 0.810 30 H 0.161 0.839 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.249 0.751 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.879 26.852 -1.824 27.353 hybrid contribution -0.576 -1.149 -0.009 1.285 sum -5.455 25.703 -1.832 26.340 Atomic orbital electron populations 1.21170 0.88889 1.04124 1.04001 1.19901 0.97781 0.89973 0.94365 1.20739 0.93175 0.86693 1.08369 1.98372 1.76832 1.30124 1.96956 1.21720 0.91236 1.00891 0.93984 1.21480 1.02336 0.90112 0.99755 1.21824 0.92258 1.00805 0.92685 1.18832 0.94254 0.88901 1.11928 1.21359 0.85880 0.84439 0.72756 1.90790 1.15102 1.87708 1.46423 1.86577 1.41265 1.14455 1.83368 1.22778 0.92151 0.79403 1.07184 1.20646 0.88832 0.84952 0.76975 1.90683 1.17856 1.86353 1.51359 1.46040 1.12181 1.05000 1.71793 1.18627 0.89683 0.82808 0.94450 1.21607 0.94851 0.90672 1.52315 0.89608 1.26045 0.96154 1.03471 0.93884 1.70124 1.10365 1.27057 1.49252 0.85159 0.78617 0.77097 0.78365 1.19654 1.21050 1.17949 0.89941 0.89754 0.90056 0.81275 0.81022 0.83941 0.85625 0.85619 0.75101 0.98917 0.98911 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.44 71.23 0.60 -1.82 16 2 C -0.02 -0.38 5.92 -19.57 -0.12 -0.50 16 3 C -0.06 -1.03 6.31 22.28 0.14 -0.89 16 4 Cl -0.05 -0.75 27.18 -2.72 -0.07 -0.82 16 5 C -0.06 -0.74 9.82 22.35 0.22 -0.52 16 6 C -0.12 -1.56 10.03 22.23 0.22 -1.34 16 7 C -0.06 -1.11 9.62 22.54 0.22 -0.90 16 8 C -0.14 -3.13 5.87 -20.10 -0.12 -3.25 16 9 C 0.51 13.66 7.83 70.33 0.55 14.21 16 10 O -0.51 -14.20 13.13 19.93 0.26 -13.93 16 11 O -0.34 -10.32 9.03 -49.77 -0.45 -10.76 16 12 C 0.06 1.73 5.95 71.24 0.42 2.15 16 13 C 0.50 19.60 7.91 87.66 0.69 20.29 16 14 O -0.58 -28.58 16.50 15.76 0.26 -28.32 16 15 N -0.70 -28.32 5.55 -466.79 -2.59 -30.91 16 16 C 0.27 14.22 5.43 85.63 0.46 14.68 16 17 C -0.56 -29.49 9.28 25.60 0.24 -29.25 16 18 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 19 C 0.00 0.23 5.46 84.65 0.46 0.70 16 20 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 21 Si 0.98 41.57 29.54 68.60 2.03 43.60 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.88 5.85 -2.39 -0.01 1.86 16 27 H 0.08 1.32 6.64 -2.39 -0.02 1.31 16 28 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 29 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 30 H 0.14 2.98 7.63 -2.91 -0.02 2.96 16 31 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 32 H 0.13 2.89 8.14 -2.39 -0.02 2.88 16 33 H 0.41 13.40 8.32 -92.71 -0.77 12.63 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -71.86 334.55 4.08 -67.78 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.36 Total: 14.61 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 4.00 Total: 13.58 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.31 Total: -85.73 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: 0.07 Total: -53.01 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.07 Total: -0.82 kcal Total: -71.86 4.08 -67.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.539 kcal (2) G-P(sol) polarization free energy of solvation -71.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds