Wall clock time and date at job start Fri Apr 10 2020 22:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86789 * 120.00457 * 2 1 4 4 H 1.48502 * 109.47397 * 240.00221 * 3 2 1 5 5 H 1.48496 * 109.47441 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47532 * 120.00237 * 3 2 1 7 7 C 1.37879 * 119.99495 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99870 * 174.06529 * 7 2 1 9 9 C 1.50704 * 120.00326 * 354.06598 * 7 2 1 10 10 C 1.53000 * 115.54840 * 86.12845 * 9 7 2 11 11 N 1.46505 * 109.46827 * 65.18566 * 10 9 7 12 12 C 1.34776 * 119.99673 * 181.26827 * 11 10 9 13 13 S 1.71200 * 120.00387 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99764 * 179.97438 * 12 11 10 15 15 C 1.39970 * 120.00000 * 174.42705 * 14 12 11 16 16 C 1.39308 * 120.47301 * 138.74944 * 15 14 12 17 17 C 1.38466 * 118.37765 * 180.02562 * 16 15 14 18 18 C 1.38420 * 119.22247 * 359.97438 * 17 16 15 19 19 Cl 1.73598 * 119.55594 * 180.02562 * 18 17 16 20 20 N 1.31939 * 120.89055 * 359.97438 * 18 17 16 21 21 C 1.31854 * 121.77488 * 359.70855 * 20 18 17 22 22 C 1.52995 * 117.49706 * 231.80541 * 9 7 2 23 23 C 1.53005 * 117.49474 * 300.46603 * 9 7 2 24 24 H 0.97001 * 119.99708 * 5.07942 * 1 2 3 25 25 H 1.08996 * 109.47304 * 305.18238 * 10 9 7 26 26 H 1.09001 * 109.46825 * 185.17802 * 10 9 7 27 27 H 0.97001 * 119.99928 * 1.26609 * 11 10 9 28 28 H 0.97004 * 120.00346 * 354.70917 * 14 12 11 29 29 H 1.08001 * 120.81287 * 359.97410 * 16 15 14 30 30 H 1.07998 * 120.38475 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.66079 * 180.30799 * 21 20 18 32 32 H 1.09003 * 117.49473 * 214.99473 * 22 9 7 33 33 H 1.08990 * 117.50477 * 0.02562 * 22 9 7 34 34 H 1.08994 * 117.50163 * 359.97191 * 23 9 7 35 35 H 1.09003 * 117.49594 * 144.97219 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0801 -1.1967 -0.0972 9 6 1.2569 -2.4958 0.1338 10 6 0.7258 -3.0896 -1.1724 11 7 1.8516 -3.4631 -2.0323 12 6 1.6225 -3.9865 -3.2530 13 16 0.0160 -4.2155 -3.7985 14 7 2.6582 -4.3297 -4.0442 15 6 2.4236 -4.9797 -5.2614 16 6 3.1467 -4.6303 -6.3997 17 6 2.8789 -5.3011 -7.5811 18 6 1.9097 -6.2893 -7.5924 19 17 1.5675 -7.1363 -9.0686 20 7 1.2432 -6.5969 -6.4960 21 6 1.4722 -5.9865 -5.3500 22 6 1.7268 -3.4720 1.2141 23 6 0.4169 -2.7010 1.3961 24 1 -0.4850 0.8368 -0.0744 25 1 0.1083 -2.3506 -1.6829 26 1 0.1275 -3.9738 -0.9527 27 1 2.7619 -3.3337 -1.7231 28 1 3.5664 -4.1298 -3.7683 29 1 3.8972 -3.8546 -6.3619 30 1 3.4199 -5.0561 -8.4831 31 1 0.9099 -6.2691 -4.4722 32 1 1.6575 -4.5374 0.9942 33 1 2.5762 -3.1727 1.8279 34 1 0.4054 -1.8948 2.1295 35 1 -0.5142 -3.2588 1.2958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797408773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:32:39 Heat of formation + Delta-G solvation = 75.371057 kcal Electronic energy + Delta-G solvation = -20188.346666 eV Core-core repulsion = 16953.409394 eV Total energy + Delta-G solvation = -3234.937272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 311.055 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.73547 -38.72488 -37.14301 -36.56477 -34.59994 -32.52299 -32.15789 -29.94554 -26.78476 -25.49805 -24.52898 -23.38006 -22.81283 -21.31427 -19.79919 -18.48064 -18.19027 -17.38103 -16.62499 -16.23695 -15.65483 -14.95440 -14.65905 -14.56880 -14.41711 -14.18734 -13.61367 -13.53266 -13.05097 -12.82027 -12.26253 -11.80123 -11.64382 -11.42800 -11.17557 -11.10142 -10.91300 -10.70777 -10.45554 -10.22677 -9.91375 -9.82106 -9.58857 -9.10278 -8.68413 -8.50488 -8.40840 -7.55637 -6.97257 -6.24941 -4.36968 0.60967 1.01732 1.65315 1.69200 2.14240 2.67337 3.14147 3.21711 3.22868 3.52586 3.70439 4.20127 4.40263 4.59391 4.68758 4.78750 5.01827 5.08329 5.37044 5.46689 5.68813 5.74752 5.97286 6.10320 6.20212 6.26929 6.34700 6.44897 6.50274 6.78296 6.92921 7.08536 7.18287 7.30292 7.53667 7.62804 7.65663 8.10580 8.63735 9.32057 10.82131 Molecular weight = 311.06amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.003046 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.680798 B = 9190.246154 C = 9688.413842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.020 3.980 10 C 0.160 3.840 11 N -0.629 5.629 12 C 0.548 3.452 13 S -0.634 6.634 14 N -0.644 5.644 15 C 0.102 3.898 16 C -0.078 4.078 17 C -0.149 4.149 18 C 0.167 3.833 19 Cl -0.038 7.038 20 N -0.467 5.467 21 C 0.166 3.834 22 C -0.213 4.213 23 C -0.138 4.138 24 H 0.266 0.734 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.402 0.598 28 H 0.408 0.592 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.184 0.816 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.302 -9.684 -10.381 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.128 4.128 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.019 3.981 10 C 0.038 3.962 11 N -0.249 5.249 12 C 0.187 3.813 13 S -0.506 6.506 14 N -0.273 5.273 15 C 0.005 3.995 16 C -0.107 4.107 17 C -0.171 4.171 18 C 0.003 3.997 19 Cl -0.010 7.010 20 N -0.178 5.178 21 C 0.004 3.996 22 C -0.250 4.250 23 C -0.176 4.176 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.238 0.762 28 H 0.246 0.754 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.201 0.799 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.211 -10.336 -10.654 16.503 hybrid contribution 2.622 2.051 0.448 3.359 sum 9.833 -8.285 -10.206 16.416 Atomic orbital electron populations 1.69942 1.05860 1.27483 1.46824 1.24986 0.94840 0.99036 0.93941 0.86680 0.79704 0.83130 0.78615 1.20318 1.21034 1.20112 1.20256 0.92594 0.88589 1.53707 0.92375 1.19064 0.99509 0.94102 0.85398 1.21705 0.85113 0.99070 0.90324 1.45466 1.13217 1.54565 1.11684 1.22378 0.93522 0.81917 0.83443 1.93460 1.02269 1.75428 1.79404 1.42007 1.08105 1.58868 1.18351 1.18453 1.00807 0.94921 0.85327 1.21334 1.00458 0.98821 0.90073 1.21530 0.99386 0.96962 0.99262 1.21689 0.94529 0.94147 0.89375 1.98394 1.94867 1.77392 1.30323 1.67176 1.24790 1.27836 0.97996 1.23218 0.92442 0.88270 0.95696 1.23084 0.99271 0.95595 1.07055 1.22490 0.92164 1.00950 1.01982 0.92419 0.88305 0.91806 0.76166 0.75358 0.83613 0.83549 0.79895 0.91518 0.90187 0.89506 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.75 12.87 55.43 0.71 -22.03 16 2 C 0.08 1.94 5.38 -17.82 -0.10 1.84 16 3 Si 0.89 19.49 29.54 -169.99 -5.02 14.46 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.51 -12.13 8.67 -34.44 -0.30 -12.43 16 8 H 0.06 1.34 7.82 -52.48 -0.41 0.93 16 9 C 0.02 0.43 1.39 -155.66 -0.22 0.21 16 10 C 0.16 3.17 4.96 -4.04 -0.02 3.15 16 11 N -0.63 -10.09 5.47 -62.03 -0.34 -10.42 16 12 C 0.55 8.60 7.75 -86.92 -0.67 7.93 16 13 S -0.63 -12.61 25.06 -107.50 -2.69 -15.31 16 14 N -0.64 -7.46 5.35 -11.30 -0.06 -7.52 16 15 C 0.10 1.24 5.94 -83.53 -0.50 0.74 16 16 C -0.08 -0.75 10.11 -39.10 -0.40 -1.15 16 17 C -0.15 -1.45 9.87 -39.43 -0.39 -1.84 16 18 C 0.17 2.04 7.27 -17.44 -0.13 1.91 16 19 Cl -0.04 -0.42 29.10 -51.86 -1.51 -1.92 16 20 N -0.47 -6.74 10.33 -10.20 -0.11 -6.85 16 21 C 0.17 2.36 9.04 -17.33 -0.16 2.20 16 22 C -0.21 -3.94 9.96 -26.69 -0.27 -4.21 16 23 C -0.14 -2.88 9.36 -26.69 -0.25 -3.13 16 24 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 25 H 0.10 2.34 7.94 -51.93 -0.41 1.93 16 26 H 0.06 1.26 7.98 -51.93 -0.41 0.85 16 27 H 0.40 5.59 8.42 -40.82 -0.34 5.25 16 28 H 0.41 3.29 8.84 -40.82 -0.36 2.93 16 29 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.18 2.82 6.25 -49.70 -0.31 2.51 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -28.93 333.02 -11.31 -40.24 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -3.92 Total: 9.11 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -3.38 Total: -4.77 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.21 Total: -46.83 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: -12.61 SS G_CDS: -2.69 Total: -15.31 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.51 Total: -1.92 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.93 -11.31 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797408773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.608 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds